README.md

RNAMunger: A Toolset for Public RNA-seq Data Analysis

Please cite our work -- (citation)

Please Scroll down for TOC

Software Workflow Diagram (Initial Plan)

Installation options:

We provide two installation options for using the indexing system: Docker or directly from Github.

A simple Jupyter notebook for using public data can be found on this repo, or in binder at the link above!

Docker

The Docker image contains as well as a webserver and FTP server in case you want to deploy the FTP server. It does also contain a web server for testing the main website (but should only be used for debug purposes).

1. docker pull ncbihackathons/<this software> command to pull the image from the DockerHub
2. docker run ncbihackathons/<this software> Run the docker image from the master shell script

Contents

Query Matched Case-Control Samples in the Sequence Read Archive

GANs for Synthetic Data Expansion

Visualization of RNA-seq Analyses

Simple Expression Analysis

Splice-it-Up! (Detection and Validation of Novel Exons from Raw Data)

One of the Original Advertisements -- courtesy Kimiko Suzuki