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alignment centroids tool should allow subregions #13

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iandobbie opened this issue Jan 31, 2019 · 0 comments
Open

alignment centroids tool should allow subregions #13

iandobbie opened this issue Jan 31, 2019 · 0 comments

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@iandobbie
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If the beam is weak the autothreshold doesn't properly work and you get the centroid of the whole chip rather than the area above background. Two possible options

  1. subregion the image and only do processing in that region

  2. option for manual threshold rather than auto threshold.

Maybe we should implement both in the planned alignment tool gui
@carandraug carandraug transferred this issue from microscope-cockpit/cockpit Dec 11, 2019
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@iandobbie