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Well i added my own flashing code in a separate branch because it needs a lot of testing.
I only tested with an arduino mega.
I managed to semi brick it during development (had to clear flash/reflash bootloader using an external programmer)
But now i managed to flash different hex files and all verified ok. it also worked to connect using the missionplanner terminal. (but hangs after the greeting, i guess due to missing sensors/hardware on the arduino mega)
Related to: ArduPilot/apm_planner#62
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