diff --git a/Makefile b/Makefile index 76ad9b813..6c5aff5c0 100644 --- a/Makefile +++ b/Makefile @@ -74,7 +74,7 @@ list-projects: @echo "Sample projects: template biorobots-sample cancer-biorobots-sample cancer-immune-sample" @echo " celltypes3-sample heterogeneity-sample pred-prey-farmer virus-macrophage-sample" @echo " worm-sample interaction-sample mechano-sample rules-sample physimess-sample custom-division-sample" - @echo " asymmetric-division-sample" + @echo " asymmetric-division-sample immune-function-sample" @echo "" @echo "Sample intracellular projects: template_BM ode-energy-sample physiboss-cell-lines-sample" @echo " cancer-metabolism-sample physiboss-tutorial physiboss-tutorial-invasion" @@ -216,6 +216,15 @@ asymmetric-division-sample: cp ./config/PhysiCell_settings.xml ./config/PhysiCell_settings-backup.xml cp -r ./sample_projects/asymmetric_division/config/* ./config/ +immune-function-sample: + cp -r ./sample_projects/immune_function/custom_modules/* ./custom_modules/ + touch main.cpp && cp main.cpp main-backup.cpp + cp ./sample_projects/immune_function/main.cpp ./main.cpp + cp Makefile Makefile-backup + cp ./sample_projects/immune_function/Makefile . + cp ./config/PhysiCell_settings.xml ./config/PhysiCell_settings-backup.xml + cp -r ./sample_projects/immune_function/config/* ./config/ + # ---- intracellular projects ode-energy-sample: cp ./sample_projects_intracellular/ode/ode_energy/custom_modules/* ./custom_modules/ diff --git a/sample_projects/Makefile-default b/sample_projects/Makefile-default index 76ad9b813..6c5aff5c0 100644 --- a/sample_projects/Makefile-default +++ b/sample_projects/Makefile-default @@ -74,7 +74,7 @@ list-projects: @echo "Sample projects: template biorobots-sample cancer-biorobots-sample cancer-immune-sample" @echo " celltypes3-sample heterogeneity-sample pred-prey-farmer virus-macrophage-sample" @echo " worm-sample interaction-sample mechano-sample rules-sample physimess-sample custom-division-sample" - @echo " asymmetric-division-sample" + @echo " asymmetric-division-sample immune-function-sample" @echo "" @echo "Sample intracellular projects: template_BM ode-energy-sample physiboss-cell-lines-sample" @echo " cancer-metabolism-sample physiboss-tutorial physiboss-tutorial-invasion" @@ -216,6 +216,15 @@ asymmetric-division-sample: cp ./config/PhysiCell_settings.xml ./config/PhysiCell_settings-backup.xml cp -r ./sample_projects/asymmetric_division/config/* ./config/ +immune-function-sample: + cp -r ./sample_projects/immune_function/custom_modules/* ./custom_modules/ + touch main.cpp && cp main.cpp main-backup.cpp + cp ./sample_projects/immune_function/main.cpp ./main.cpp + cp Makefile Makefile-backup + cp ./sample_projects/immune_function/Makefile . + cp ./config/PhysiCell_settings.xml ./config/PhysiCell_settings-backup.xml + cp -r ./sample_projects/immune_function/config/* ./config/ + # ---- intracellular projects ode-energy-sample: cp ./sample_projects_intracellular/ode/ode_energy/custom_modules/* ./custom_modules/ diff --git a/sample_projects/immune_test_2024/Makefile b/sample_projects/immune_function/Makefile similarity index 100% rename from sample_projects/immune_test_2024/Makefile rename to sample_projects/immune_function/Makefile diff --git a/sample_projects/immune_test_2024/VERSION.txt b/sample_projects/immune_function/VERSION.txt similarity index 100% rename from sample_projects/immune_test_2024/VERSION.txt rename to sample_projects/immune_function/VERSION.txt diff --git a/sample_projects/immune_test_2024/config/PhysiCell_settings.xml b/sample_projects/immune_function/config/PhysiCell_settings.xml similarity index 100% rename from sample_projects/immune_test_2024/config/PhysiCell_settings.xml rename to sample_projects/immune_function/config/PhysiCell_settings.xml diff --git a/sample_projects/immune_test_2024/config/cell_rules.csv b/sample_projects/immune_function/config/cell_rules.csv similarity index 86% rename from sample_projects/immune_test_2024/config/cell_rules.csv rename to sample_projects/immune_function/config/cell_rules.csv index 684855ced..0799bc9c2 100644 --- a/sample_projects/immune_test_2024/config/cell_rules.csv +++ b/sample_projects/immune_function/config/cell_rules.csv @@ -7,4 +7,4 @@ tumor cell,apoptotic,increases,apoptotic debris secretion,1,0.5,10,1 tumor cell,necrotic,increases,necrotic debris secretion,1,0.5,10,1 // tumor cell,doxorubicin,increases,damage rate,1,0.5,4,0 tumor cell,time,decreases,damage repair rate,0,15,10,0 -fast T cell,damage delivered,increases,transformation to exhausted T cell,... \ No newline at end of file +fast T cell,damage delivered,increases,transform to exhausted T cell,0.01,30.0,8,0 diff --git a/sample_projects/immune_test_2024/config/cells.csv b/sample_projects/immune_function/config/cells.csv similarity index 100% rename from sample_projects/immune_test_2024/config/cells.csv rename to sample_projects/immune_function/config/cells.csv diff --git a/sample_projects/immune_test_2024/custom_modules/custom.cpp b/sample_projects/immune_function/custom_modules/custom.cpp similarity index 100% rename from sample_projects/immune_test_2024/custom_modules/custom.cpp rename to sample_projects/immune_function/custom_modules/custom.cpp diff --git a/sample_projects/immune_test_2024/custom_modules/custom.h b/sample_projects/immune_function/custom_modules/custom.h similarity index 100% rename from sample_projects/immune_test_2024/custom_modules/custom.h rename to sample_projects/immune_function/custom_modules/custom.h diff --git a/sample_projects/immune_test_2024/main.cpp b/sample_projects/immune_function/main.cpp similarity index 100% rename from sample_projects/immune_test_2024/main.cpp rename to sample_projects/immune_function/main.cpp diff --git a/sample_projects/immune_test_2024/custom_modules/empty.txt b/sample_projects/immune_test_2024/custom_modules/empty.txt deleted file mode 100644 index e69de29bb..000000000