-
This most likely will make me rather unpopular on this discussion board. After upgrading to Geany 1.38 for my Ubuntu 20.04 LTS distribution, setting Julia 1.7.2 for use from Geany and running the following code, using Pkg Pkg.add("MRIReco") include("MRIRecoTutorial.jl") ` I get these [ error ] messages. Info: Bruker protocol name : T2_RARE
WARNING: both Distributions and ImageUtils export "entropy"; uses of it in module MRIReco must be qualified (program exited with code: 1) |
Beta Was this translation helpful? Give feedback.
Replies: 5 comments 9 replies
-
It might be related to this issue : JuliaImageRecon/RegularizedLeastSquares.jl#39 and Can you try to change the line https://github.com/MagneticResonanceImaging/MRIRecoTutorial/blob/99150d21a912fb6c10b9a5c3ea6499a44c4d4ff6/MRIRecoTutorial.jl#L509 to |
Beta Was this translation helpful? Give feedback.
-
This issue is related to a discussion in LinearOperators and changes therein from the recent 2.3.x releases. There has been some investigation of this by myself and @migrosser and we are finding a solution hopefully. I will try your example on the master. I would encourage you to try the example yourself on the master branch of the package. This can be done by switching the version of your MRIReco package in the REPL via the following:
|
Beta Was this translation helpful? Give feedback.
-
@edmontz I have gone through the tutorial and have been able to reproduce your error(s). Unfortunately, the errors mostly stem from either active issues in the package which are being fixed, or from the fact that the package has evolved since the tutorial was written, and there are breaking changes in other packages such as LinearOperators and RegularizedLeastSquares which haven't been accounted for. For now, I think the best thing to do in order to run the tutorial is to make sure that you are using the version of each package that was available when the tutorial was written. I think we will in the future make sure that changes don't break the tutorial. For me, the package versions that work with the tutorial are as follows: CUDA v3.10.0 You can add a specific package version by typing |
Beta Was this translation helpful? Give feedback.
-
I posted the code again, as comments within the code don't appear as expected. |
Beta Was this translation helpful? Give feedback.
-
Editor problems remain, shall attempt to include code as a text file attachment, you need to change the txt extension to jl. I also tested this using Windows 10, 64 bit and the same versions of Geany and Julia as I did with Ubuntu 20.04, x86_64; |
Beta Was this translation helpful? Give feedback.
Editor problems remain, shall attempt to include code as a text file attachment, you need to change the txt extension to jl.
mri_reco4.txt
I also tested this using Windows 10, 64 bit and the same versions of Geany and Julia as I did with Ubuntu 20.04, x86_64;
the results appear to be identical.