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extra.yml
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name: libEnsemble-complete-CI
on:
workflow_dispatch:
jobs:
test-libE:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
mpi-version: [mpich]
python-version: [3.9, "3.10", "3.11", "3.12"]
pydantic-version: ["2.8.2"]
comms-type: [m, l]
include:
- os: macos-latest
python-version: 3.11
mpi-version: mpich
pydantic-version: "2.8.2"
comms-type: m
- os: macos-latest
python-version: 3.11
mpi-version: mpich
pydantic-version: "2.8.2"
comms-type: l
- os: ubuntu-latest
python-version: "3.10"
mpi-version: mpich
pydantic-version: "2.8.2"
comms-type: t
- os: ubuntu-latest
mpi-version: "openmpi"
pydantic-version: "2.8.2"
python-version: "3.12"
comms-type: l
- os: ubuntu-latest
mpi-version: mpich
python-version: "3.10"
pydantic-version: "1.10.17"
comms-type: m
- os: ubuntu-latest
mpi-version: mpich
python-version: "3.10"
pydantic-version: "1.10.17"
comms-type: l
env:
HYDRA_LAUNCHER: "fork"
TERM: xterm-256color
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Setup conda - Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: condaenv
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
channels: conda-forge
channel-priority: flexible
auto-update-conda: true
- name: Force-update certifi
run: |
python --version
pip install -I --upgrade certifi
- name: Install Ubuntu compilers
if: matrix.os == 'ubuntu-latest'
run: conda install gcc_linux-64
# Roundabout solution on macos for proper linking with mpicc
- name: Install macOS compilers
if: matrix.os == 'macos-latest'
run: |
conda install clang_osx-64
- name: Install mpi4py and MPI from conda
run: |
conda install mpi4py ${{ matrix.mpi-version }}
- name: Install generator dependencies
run: |
conda env update --file install/gen_deps_environment.yml
- name: Install gpcam
if: matrix.python-version != '3.12'
run: |
pip install gpcam
- name: Install surmise
if: matrix.os == 'ubuntu-latest'
run: |
pip install --upgrade git+https://github.com/bandframework/surmise.git
- name: Install generator dependencies for Ubuntu tests
if: matrix.os == 'ubuntu-latest' && matrix.python-version != '3.12'
run: |
sudo apt-get install bc
pip install -r install/ubuntu_no312.txt
pip install Tasmanian --user
- name: Install Balsam on Pydantic 1
if: matrix.pydantic-version == '1.10.17'
run: |
conda install pyzmq
git clone https://github.com/argonne-lcf/balsam.git
sed -i -e "s/pyzmq>=22.1.0,<23.0.0/pyzmq>=23.0.0,<24.0.0/" ./balsam/setup.cfg
cd balsam; pip install -e .; cd ..
- name: Install other testing dependencies
run: |
conda install octave
pip install -r install/testing_requirements.txt
pip install -r install/misc_feature_requirements.txt
source install/install_ibcdfo.sh
- name: Install libEnsemble, flake8, lock environment
run: |
pip install pydantic==${{ matrix.pydantic-version }}
pip install -e .
flake8 libensemble
- name: Remove various tests on newer pythons
if: matrix.python-version >= '3.11'
run: |
# rm ./libensemble/tests/regression_tests/test_gpCAM.py
rm ./libensemble/tests/regression_tests/test_persistent_gp.py
- name: Remove test for persistent Tasmanian, Surmise on Python 3.12
if: matrix.python-version >= '3.12'
run: |
rm ./libensemble/tests/regression_tests/test_persistent_tasmanian.py
rm ./libensemble/tests/regression_tests/test_persistent_tasmanian_async.py
rm ./libensemble/tests/regression_tests/test_persistent_surmise_calib.py
rm ./libensemble/tests/regression_tests/test_persistent_surmise_killsims.py
- name: Install redis/proxystore on Pydantic 2
if: matrix.pydantic-version == '2.8.2'
run: |
pip install redis
pip install proxystore==0.7.0
- name: Remove proxystore test on Pydantic 1
if: matrix.pydantic-version == '1.10.17'
run: |
rm ./libensemble/tests/regression_tests/test_proxystore_integration.py
- name: Remove Balsam/Globus-compute tests on Pydantic 2
if: matrix.pydantic-version == '2.8.2'
run: |
rm ./libensemble/tests/unit_tests/test_ufunc_runners.py
rm ./libensemble/tests/unit_tests/test_executor_balsam.py
- name: Start Redis
if: matrix.os == 'ubuntu-latest'
uses: supercharge/[email protected]
with:
redis-version: 7
- name: Run extensive tests
run: |
./libensemble/tests/run-tests.sh -e -z -${{ matrix.comms-type }}
- name: Merge coverage
run: |
mv libensemble/tests/.cov* .
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v4
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
spellcheck:
name: Spellcheck release branch
if: contains(github.base_ref, 'develop')
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: crate-ci/[email protected]