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extra.yml
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name: libEnsemble-complete-CI
on:
workflow_dispatch:
jobs:
test-libE:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
mpi-version: [mpich]
python-version: [3.9, "3.10", "3.11", "3.12"]
pydantic-version: ["2.8.2"]
comms-type: [m, l]
include:
- os: macos-latest
python-version: 3.11
mpi-version: mpich
pydantic-version: "2.8.2"
comms-type: m
- os: macos-latest
python-version: 3.11
mpi-version: mpich
pydantic-version: "2.8.2"
comms-type: l
- os: ubuntu-latest
python-version: "3.10"
mpi-version: mpich
pydantic-version: "2.8.2"
comms-type: t
- os: ubuntu-latest
mpi-version: "openmpi"
pydantic-version: "2.8.2"
python-version: "3.12"
comms-type: l
- os: ubuntu-latest
mpi-version: mpich
python-version: "3.10"
pydantic-version: "1.10.17"
comms-type: m
- os: ubuntu-latest
mpi-version: mpich
python-version: "3.10"
pydantic-version: "1.10.17"
comms-type: l
env:
HYDRA_LAUNCHER: "fork"
TERM: xterm-256color
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Setup conda - Python ${{ matrix.python-version }}
uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: condaenv
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
channels: conda-forge
channel-priority: flexible
auto-update-conda: true
- uses: actions/cache/restore@v4
name: Restore cached dependencies
id: cache
if: matrix.os == 'ubuntu-latest'
with:
path: |
/home/runner/work/libensemble/libensemble/heffte/build/
/home/runner/.local
/usr/share/miniconda3/envs/condaenv
/usr/share/miniconda3/bin
/usr/share/miniconda3/lib
/usr/share/miniconda3/include
key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }}-${{ matrix.pydantic-version }}-extra
- name: Force-update certifi
run: |
python --version
pip install -I --upgrade certifi
- name: Install Ubuntu compilers
if: matrix.os == 'ubuntu-latest'
run: conda install gcc_linux-64
# Roundabout solution on macos for proper linking with mpicc
- name: Install macOS compilers
if: matrix.os == 'macos-latest'
run: |
conda install clang_osx-64
- name: Install mpi4py and MPI from conda
if: (matrix.python-version != '3.10' && matrix.os == 'ubuntu-latest') || matrix.os == 'macos-latest'
run: |
conda install mpi4py ${{ matrix.mpi-version }}
- name: Install mpi4py from pip, MPI from conda
if: matrix.python-version == '3.10' && matrix.os == 'ubuntu-latest'
run: |
conda install ${{ matrix.mpi-version }}
pip install mpi4py
- name: Install generator dependencies
run: |
python -m pip install --upgrade pip
pip install mpmath
pip install matplotlib
conda env update --file install/gen_deps_environment.yml
#- name: Install ax-platform
# run: pip install "ax-platform<=0.4.0"
- name: Install gpcam
if: matrix.python-version != '3.12'
run: |
pip install gpcam
- name: Install surmise
if: matrix.os != 'macos-latest'
run: |
pip install --upgrade git+https://github.com/bandframework/surmise.git
- name: Build ytopt and dependencies
if: matrix.python-version <= '3.10' && matrix.os != 'macos-latest'
run: |
pip install scikit-learn==1.4.0
pip install pandas==2.2.1
pip install ConfigSpace
pip install "ray[default]"
git clone https://github.com/ytopt-team/scikit-optimize.git
cd scikit-optimize
pip install .
cd ..
git clone -b version1 https://github.com/ytopt-team/autotune.git
cd autotune
pip install .
cd ..
git clone -b main https://github.com/ytopt-team/ytopt.git
cd ytopt
pip install .
cd ..
- name: Install generator dependencies for Ubuntu tests
if: matrix.os == 'ubuntu-latest' && matrix.python-version != '3.12'
run: |
sudo apt-get install bc
# pip install dragonfly-opt
# pip install git+https://github.com/dragonfly/dragonfly.git
pip install git+https://github.com/jlnav/dragonfly.git@fix/remove_npobject
pip install scikit-build packaging Tasmanian --user
- name: Install Balsam on Pydantic 1
if: matrix.pydantic-version == '1.10.17'
run: |
conda install pyzmq
git clone https://github.com/argonne-lcf/balsam.git
sed -i -e "s/pyzmq>=22.1.0,<23.0.0/pyzmq>=23.0.0,<24.0.0/" ./balsam/setup.cfg
cd balsam; pip install -e .; cd ..
- name: Install other testing dependencies
run: |
conda install octave
pip install -r install/testing_requirements.txt
pip install -r install/misc_feature_requirements.txt
git clone --recurse-submodules -b develop https://github.com/POptUS/IBCDFO.git
pushd IBCDFO/minq/py/minq5/
export PYTHONPATH="$PYTHONPATH:$(pwd)"
echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV
popd
pushd IBCDFO/ibcdfo_pypkg/
pip install -e .
popd
- name: Build heffte
if: matrix.os != 'macos-latest'
run: |
# begin heffte build and dependencies
sudo apt install libfftw3-dev
git clone https://github.com/icl-utk-edu/heffte.git
mkdir heffte/build
cd heffte/build
pwd
cmake -D CMAKE_BUILD_TYPE=Release -D BUILD_SHARED_LIBS=ON -D CMAKE_INSTALL_PREFIX=./ -D Heffte_ENABLE_AVX=ON -D Heffte_ENABLE_FFTW=ON ../
make -j 4
make install
cp ./benchmarks/speed3d_c2c ../../libensemble/tests/regression_tests/
# end heffte build and dependencies
- uses: actions/cache/save@v4
name: Save dependencies to cache
if: matrix.os == 'ubuntu-latest'
with:
path: |
/home/runner/work/libensemble/libensemble/heffte/build/
/home/runner/.local
/usr/share/miniconda3/envs/condaenv
/usr/share/miniconda3/bin
/usr/share/miniconda3/lib
/usr/share/miniconda3/include
key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }}
- name: Install libEnsemble, flake8, lock environment
run: |
pip install pydantic==${{ matrix.pydantic-version }}
pip install -e .
flake8 libensemble
- name: Remove various tests on newer pythons
if: matrix.python-version >= '3.11'
run: |
rm ./libensemble/tests/regression_tests/test_ytopt_heffte.py
# rm ./libensemble/tests/regression_tests/test_gpCAM.py
rm ./libensemble/tests/regression_tests/test_persistent_gp.py
- name: Remove test for persistent Tasmanian on Python 3.12
if: matrix.python-version >= '3.12'
run: |
rm ./libensemble/tests/regression_tests/test_persistent_tasmanian.py
rm ./libensemble/tests/regression_tests/test_persistent_tasmanian_async.py
- name: Install redis/proxystore on Pydantic 2
if: matrix.pydantic-version == '2.6.4'
run: |
pip install redis
pip install proxystore==0.7.0
- name: Remove proxystore test on Pydantic 1
if: matrix.pydantic-version == '1.10.13'
run: |
rm ./libensemble/tests/regression_tests/test_proxystore_integration.py
- name: Remove Balsam/Globus-compute tests on Pydantic 2
if: matrix.pydantic-version == '2.8.2'
run: |
rm ./libensemble/tests/unit_tests/test_ufunc_runners.py
rm ./libensemble/tests/unit_tests/test_executor_balsam.py
- name: Start Redis
if: matrix.os == 'ubuntu-latest'
uses: supercharge/[email protected]
with:
redis-version: 7
- name: Run extensive tests, Ubuntu
if: matrix.os == 'ubuntu-latest'
run: |
./libensemble/tests/run-tests.sh -e -z -${{ matrix.comms-type }}
- name: Run extensive tests, macOS
if: matrix.os == 'macos-latest'
run: |
./libensemble/tests/run-tests.sh -e -z -${{ matrix.comms-type }}
- name: Merge coverage
run: |
mv libensemble/tests/.cov* .
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v4
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
spellcheck:
name: Spellcheck release branch
if: contains(github.base_ref, 'develop')
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: crate-ci/[email protected]