diff --git a/.github/workflows/update_documentation.yml b/.github/workflows/update_documentation.yml index 4f583cc..da3633f 100644 --- a/.github/workflows/update_documentation.yml +++ b/.github/workflows/update_documentation.yml @@ -31,20 +31,18 @@ jobs: python -m pip install --upgrade pip pip install poetry poetry install # Ensure all dependencies are installed - - - name: Debug - run: | - echo $PATH - which jupyter + - name: Verify pyyaml installation run: | poetry run python -c "import yaml; print('pyyaml installed successfully')" - - name: Install R dependencies and IRkernel + - name: Install IRkernel run: | - poetry run pip install jupyter + pip install jupyter R -e 'install.packages(c("renv", "IRkernel"))' R -e 'IRkernel::installspec(user = FALSE)' + + - name: Install R dependencies R -e "renv::restore()" - name: Run Makefile