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23 Open 216 Closed
23 Open 216 Closed
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Issues list

Can I use AlphaPullDown for 5K proteins?
#406 opened Oct 1, 2024 by Rohit-Satyam
5
question: correct pipeline for mmseqs alignments in alphapulldown? bug Something isn't working
#391 opened Aug 3, 2024 by gieses
2
rename_colab_search_a3m.py does something unintended
#378 opened Jul 9, 2024 by IwanParf Version2
4
Add dropout
#340 opened May 14, 2024 by jkosinski For_later
GPU not working when run_multimer_jobs.py
#339 opened May 14, 2024 by polya18
3
Too many proteins in one interaction ?
#337 opened May 13, 2024 by Qrouger Version2
2
Add generation of JSON for AlphaFold server enhancement New feature or request
#336 opened May 11, 2024 by jkosinski
using several GPUs on a single workstation
#334 opened May 8, 2024 by errinaceus
@dingquanyu
1
Make it possible to run create_individual_features.py with multimeric tempaltes using mmseqs2
#332 opened May 6, 2024 by DimaMolod For_later
1
Flash attention? enhancement New feature or request
#320 opened Apr 21, 2024 by jkosinski For_later
Path output alpha-analysis.sif
#316 opened Apr 17, 2024 by JtheBAB
3
How to run with reduced_dbs
#293 opened Mar 19, 2024 by fteufel Version2
2
Add an analysis script to draw MSA coverage, pLDDT plots, and distograms
#258 opened Feb 18, 2024 by jkosinski For_later
@DimaMolod @gchojnowski
1
Generate Distogram and MSA coverage
#256 opened Feb 15, 2024 by Qrouger
7
allow_resume can be very slow
#241 opened Jan 10, 2024 by jkosinski Version2
@DimaMolod
notebook autosave off not working? bug Something isn't working
#227 opened Dec 21, 2023 by jkosinski Version2
@dingquanyu
2
alphalink2 example question Further information is requested
#213 opened Dec 12, 2023 by grandrea Version2
@dingquanyu
4
Implement VoroIF-GNN scoring of interfaces enhancement New feature or request
#204 opened Nov 15, 2023 by jkosinski For_later
@dingquanyu
Proper naming for alpha-analysis.sif
#155 opened Jul 4, 2023 by Pooryamb Version2
@dingquanyu
Plotting interaction network enhancement New feature or request
#141 opened Jun 1, 2023 by mpm896 Version2
@jkosinski @DimaMolod @dingquanyu
1
--model_preset flag is not used
#55 opened Sep 22, 2022 by swanss
@jkosinski @DimaMolod @dingquanyu
9
Requesting feature: ability to skip MSA generation step enhancement New feature or request
#42 opened Aug 30, 2022 by swanss For_later
@DimaMolod @dingquanyu
1
Give option to re-calculate features for a fragment
#30 opened Jul 27, 2022 by jkosinski For_later
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