A few BactoTraits columns that are missing

[realmarcin]

These were omitted earlier for sake of time -- but they do provide new features which are sizes of the ranges. I am modeling these in the ontology and will have these column names as xrefs. If its not much work, it would be good to ingest this for completness.

pHd_<=1 pHd_1_2 pHd_2_3 pHd_3_4 pHd_4_5 pHd_5_9

Nad_<=1 Nad_1_3 Nad_3_8 Nad_>8

Td_1_5 Td_5_10 Td_10_20 Td_20_30 Td_>30

Definitions are here:
https://www.sciencedirect.com/science/article/pii/S1470160X21007123

pH_delta	Extend of pH units that a strain can grow (calculated from pH_Range trait: max–min value)	pH unit	Quantitative, categorial	6 categories (<1, ≥1-2, ≥2-3, ≥3-4, ≥4-5, ≥5-9)	1

Temp_delta	Extend of the temperature range in which a strain can grow (calculated from temp_Range trait)	°C	Quantitative, categorial	5 categories (≥1-5, ≥5-10, ≥10-20, ≥20-30, ≥30)	1

Temp_delta	Extend of the temperature range in which a strain can grow (calculated from temp_Range trait)	°C	Quantitative, categorial	5 categories (≥1-5, ≥5-10, ≥10-20, ≥20-30, ≥30)	1

@hrshdhgd

[hrshdhgd]

pH_delta prefixes are already in the KG:

kg-microbe/data/transformed/BactoTraits/nodes.tsv

Lines 52 to 60 in 9b8343a

	pH_opt:mid1 biolink:PhenotypicQuality optimal pH 6 to 7
	pH_range:mid2 biolink:PhenotypicQuality pH range 6 to 7
	pH_range:mid3 biolink:PhenotypicQuality pH range 7 to 8
	pH_delta:low biolink:PhenotypicQuality pH delta 1 to 2
	temp_opt:mid1 biolink:PhenotypicQuality optimal temperature 22 deg C to 27 deg C
	temp_range:low biolink:PhenotypicQuality temperature range 10 deg C to 22 deg C
	NCBITaxon:1121106 biolink:OrganismTaxon Belnapia moabensis DSM 16746
	pH_opt:mid2 biolink:PhenotypicQuality optimal pH 7 to 8
	pH_delta:mid1 biolink:PhenotypicQuality pH delta 2 to 3

For the other two is there data for them at all? I see just 0 or None values.

All the prefixes in the custom_curies.yaml have been considered during the KG creation.

[realmarcin]

OK thanks for checking! Yes, if there are no values then nothing to ingest of course!
These are all now in the ontology as well.

Of course I should have checked the merge first!
These are already ingested, so there were some real values available for all three types of delta terms:

grep temp_delta: merged-kg_edges.tsv | wc
3951 27657 538151
grep pH_delta: merged-kg_edges.tsv | wc
2915 20405 391781
grep NaCl_delta: merged-kg_edges.tsv | wc
3123 21861 424900