two subclass edges for strain #235
Comments
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This I where it comes from .... mediadive.json => {'bacdive_id': 167709, 'ccno': 'DSM 29513', 'domain': 'B', 'growth': 1, 'id': 47877, 'species': 'Roseimaritima multifibrata'}from {
"bacdive_id":159082,
"ccno":"DSM 100215",
"domain":"B",
"growth":1,
"id":25348,
"species":"Stieleria maiorica"
},
{
"bacdive_id":160524,
"ccno":"DSM 100295",
"domain":"B",
"growth":1,
"id":25375,
"species":"Stieleria neptunia"
},
{
"bacdive_id":160830,
"ccno":"DSM 100415",
"domain":"B",
"growth":1,
"id":25432,
"species":"Blastopirellula retiformator"
},
{
"bacdive_id":160662,
"ccno":"DSM 100416",
"domain":"B",
"growth":1,
"id":25433,
"species":"Gimesia panareensis"
},
{
"bacdive_id":159083,
"ccno":"DSM 100706",
"domain":"B",
"growth":1,
"id":25623,
"species":"Crateriforma conspicua"
},
{
"bacdive_id":160477,
"ccno":"DSM 100710",
"domain":"B",
"growth":1,
"id":25626,
"species":"Gimesia fumaroli"
},
{
"bacdive_id":160513,
"ccno":"DSM 100745",
"domain":"B",
"growth":1,
"id":25646,
"species":"Botrimarina mediterranea"
},
{
"bacdive_id":160128,
"ccno":"DSM 100832",
"domain":"B",
"growth":1,
"id":25685,
"species":"Pseudobythopirellula maris"
},
{
"bacdive_id":160632,
"ccno":"DSM 101992",
"domain":"B",
"growth":1,
"id":26112,
"species":"Bremerella volcania"
},
{
"bacdive_id":160127,
"ccno":"DSM 102885",
"domain":"B",
"growth":1,
"id":26751,
"species":"Stieleria varia"
},
{
"bacdive_id":160299,
"ccno":"DSM 101710",
"domain":"B",
"growth":1,
"id":26015,
"species":"Gimesia aquarii"
},
{
"bacdive_id":160572,
"ccno":"DSM 103020",
"domain":"B",
"growth":1,
"id":26801,
"species":"Posidoniimonas polymericola"
},
{
"bacdive_id":160326,
"ccno":"DSM 103485",
"domain":"B",
"growth":1,
"id":27001,
"species":"Botrimarina hoheduenensis"
},
{
"bacdive_id":160300,
"ccno":"DSM 104302",
"domain":"B",
"growth":1,
"id":27366,
"species":"Gimesia aquarii"
},
{
"bacdive_id":160642,
"ccno":"DSM 100744",
"domain":"B",
"growth":1,
"id":25645,
"species":"Gimesia alba"
},
{
"bacdive_id":160831,
"ccno":"DSM 101012",
"domain":"B",
"growth":1,
"id":25814,
"species":"Tautonia plasticadhaerens"
},
{
"bacdive_id":169331,
"ccno":"DSM 29351",
"domain":"B",
"growth":1,
"id":47805,
"species":"Crateriforma conspicua"
},
{
"bacdive_id":166400,
"ccno":"DSM 29369",
"domain":"B",
"growth":1,
"id":47810,
"species":"Rubinisphaera italica"
},
{
"bacdive_id":166388,
"ccno":"DSM 29405",
"domain":"B",
"growth":1,
"id":47822,
"species":"Caulifigura coniformis"
},
{
"bacdive_id":167709,
"ccno":"DSM 29513",
"domain":"B",
"growth":1,
"id":47877,
"species":"Roseimaritima multifibrata"
},
{
"bacdive_id":166387,
"ccno":"DSM 29767",
"domain":"B",
"growth":1,
"id":48033,
"species":"Calycomorphotria hydatis"
},
{
"bacdive_id":169440,
"ccno":"DSM 29811",
"domain":"B",
"growth":1,
"id":48055,
"species":"Gimesia chilikensis"
},
{
"bacdive_id":169332,
"ccno":"DSM 29812",
"domain":"B",
"growth":1,
"id":48056,
"species":"Crateriforma conspicua"
},
{
"bacdive_id":167848,
"ccno":"DSM 29815",
"domain":"B",
"growth":1,
"id":48059,
"species":"Rosistilla ulvae"
},
{
"bacdive_id":168438,
"ccno":"DSM 29816",
"domain":"B",
"growth":1,
"id":48060,
"species":"Adhaeretor mobilis"
},
{
"bacdive_id":168188,
"ccno":"DSM 29813",
"domain":"B",
"growth":1,
"id":48057,
"species":"Rubripirellula lacrimiformis"
},
{
"bacdive_id":169601,
"ccno":"DSM 100280",
"domain":"B",
"growth":1,
"id":48313,
"species":"Gimesia panareensis"
},
{
"bacdive_id":166389,
"ccno":"DSM 100296",
"domain":"B",
"growth":1,
"id":48327,
"species":"Maioricimonas rarisocia"
},
{
"bacdive_id":169698,
"ccno":"DSM 100539",
"domain":"B",
"growth":1,
"id":48437,
"species":"Rosistilla oblonga"
},
{
"bacdive_id":169383,
"ccno":"DSM 100578",
"domain":"B",
"growth":1,
"id":48447,
"species":"Gimesia maris"
},
{
"bacdive_id":169196,
"ccno":"DSM 100697",
"domain":"B",
"growth":1,
"id":48485,
"species":"Mucisphaera calidilacus"
},
{
"bacdive_id":166399,
"ccno":"DSM 100707",
"domain":"B",
"growth":1,
"id":48491,
"species":"Alienimonas californiensis"
},
{
"bacdive_id":166391,
"ccno":"DSM 100737",
"domain":"B",
"growth":1,
"id":48504,
"species":"Thalassoglobus polymorphus"
},
{
"bacdive_id":169441,
"ccno":"DSM 100825",
"domain":"B",
"growth":1,
"id":48558,
"species":"Gimesia chilikensis"
},
{
"bacdive_id":169442,
"ccno":"DSM 101178",
"domain":"B",
"growth":1,
"id":48731,
"species":"Gimesia chilikensis"
},
{
"bacdive_id":169384,
"ccno":"DSM 101991",
"domain":"B",
"growth":1,
"id":49293,
"species":"Gimesia maris"
},
{
"bacdive_id":166396,
"ccno":"DSM 102267",
"domain":"B",
"growth":1,
"id":49436,
"species":"Rubripirellula amarantea"
},
{
"bacdive_id":166394,
"ccno":"DSM 102937",
"domain":"B",
"growth":1,
"id":49582,
"species":"Rhodopirellula pilleata"
},
{
"bacdive_id":166404,
"ccno":"DSM 102938",
"domain":"B",
"growth":1,
"id":49583,
"species":"Rosistilla carotiformis"
},
{
"bacdive_id":169493,
"ccno":"DSM 103143",
"domain":"B",
"growth":1,
"id":49701,
"species":"Symmachiella dynata"
},
{
"bacdive_id":166370,
"ccno":"DSM 103145",
"domain":"B",
"growth":1,
"id":49703,
"species":"Novipirellula artificiosorum"
},
{
"bacdive_id":166358,
"ccno":"DSM 103355",
"domain":"B",
"growth":1,
"id":49827,
"species":"Botrimarina colliarenosi"
},
{
"bacdive_id":166398,
"ccno":"DSM 103356",
"domain":"B",
"growth":1,
"id":49828,
"species":"Rubripirellula tenax"
},
{
"bacdive_id":166410,
"ccno":"DSM 103357",
"domain":"B",
"growth":1,
"id":49829,
"species":"Novipirellula galeiformis"
},
{
"bacdive_id":166385,
"ccno":"DSM 103387",
"domain":"B",
"growth":1,
"id":49834,
"species":"Polystyrenella longa"
},
{
"bacdive_id":166401,
"ccno":"DSM 103537",
"domain":"B",
"growth":1,
"id":49923,
"species":"Aureliella helgolandensis"
},
{
"bacdive_id":166397,
"ccno":"DSM 103767",
"domain":"B",
"growth":1,
"id":50061,
"species":"Rubripirellula reticaptiva"
},
{
"bacdive_id":166384,
"ccno":"DSM 103796",
"domain":"B",
"growth":1,
"id":50081,
"species":"Lignipirellula cremea"
},
{
"bacdive_id":166409,
"ccno":"DSM 103929",
"domain":"B",
"growth":1,
"id":50153,
"species":"Novipirellula aureliae"
},
{
"bacdive_id":167009,
"ccno":"DSM 103958",
"domain":"B",
"growth":1,
"id":50171,
"species":"Poriferisphaera corsica"
},
{
"bacdive_id":166405,
"ccno":"DSM 104080",
"domain":"B",
"growth":1,
"id":50227,
"species":"Rosistilla oblonga"
},
{
"bacdive_id":167176,
"ccno":"DSM 104081",
"domain":"B",
"growth":1,
"id":50228,
"species":"Thalassoglobus neptunius"
},
{
"bacdive_id":166407,
"ccno":"DSM 104301",
"domain":"B",
"growth":1,
"id":50354,
"species":"Symmachiella macrocystis"
},
{
"bacdive_id":166365,
"ccno":"DSM 104841",
"domain":"B",
"growth":1,
"id":50796,
"species":"Bythopirellula polymerisocia"
},
{
"bacdive_id":167291,
"ccno":"DSM 104303",
"domain":"B",
"growth":1,
"id":50355,
"species":"Posidoniimonas corsicana"
},
{
"bacdive_id":167060,
"ccno":"DSM 100603",
"domain":"B",
"growth":1,
"id":48469,
"species":"Lacipirellula limnantheis"
},
{
"bacdive_id":166406,
"ccno":"DSM 101177",
"domain":"B",
"growth":1,
"id":48730,
"species":"Symmachiella dynata"
}
]which is derived from |
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Bacdive page for their strain:
https://bacdive.dsmz.de/strain/167709
bacdive.dsmz.debacdive.dsmz.de
Roseimaritima multifibrata FF011L | Type strain | DSM 29513, LMG 29016 | BacDiveID:167709
Metadata on 167709
7:14
Top of bacdive_strains.json record for this one;
"167709": {
"General": {
"@ref": 20215,
"BacDive-ID": 167709,
"keywords": [
"16S sequence",
"Bacteria"
],
"description": "Roseimaritima multifibrata FF011L is a bacterium of the family Pirellulaceae.",
"NCBI tax id": {
"NCBI tax id": 1930274,
"Matching level": "species"
},
"doi": "10.13145/bacdive167709.20220920.7"
},
"Name and taxonomic classification": {
"LPSN": {
"@ref": 20215,
"description": "domain/bacteria",
"keyword": "phylum/planctomycetota",
"domain": "Bacteria",
"phylum": "Planctomycetota",
"class": "Planctomycetia",
"order": "Pirellulales",
"family": "Pirellulaceae",
"genus": "Roseimaritima",
"species": "Roseimaritima multifibrata",
"full scientific name": "Roseimaritima multifibrata Wiegand et al. 2021"
},
7:15
Our latest merged edges have two subclass edges for this strain:
urn:uuid:f3d8042a-8374-48b5-bc51-be59c9f944ae strain:bacdive_167709 biolink:subclass_of NCBITaxon:1930274 rdfs:subClassOf Graph bacdive:167709
urn:uuid:40168bbc-e130-446e-9de2-87f2c3a71077 strain:bacdive_167709 biolink:subclass_of NCBITaxon:47877 rdfs:subClassOf Graph bacdive:167709
(edited)
7:16
The first one is correct with respect to bacdive json source:
"NCBI tax id": {
"NCBI tax id": 1930274,
"Matching level": "species"
},
@hrshdhgd
The text was updated successfully, but these errors were encountered: