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.travis.yml
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.travis.yml
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language: python
python:
- 3.8
before_install:
- sudo apt-get update
- wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
- bash miniconda.sh -b -f -p $HOME/miniconda
- source "$HOME/miniconda/etc/profile.d/conda.sh"
- hash -r
- conda config --set always_yes yes
- conda update conda
- conda info -a
- conda config --add channels defaults
- conda config --add channels anaconda
- conda config --add channels bioconda
- conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
- conda activate test-environment
install:
- conda install -c bioconda vsearch=2.14.2
- pip install pandas==1.0.5
- pip install pytest==5.4.3
- pip install pyfastx==0.6.13
- pip install biopython==1.77
stages:
- test
stage: test
script:
- travis_wait 15 python3 -m pytest tests/