From 8de9509c43f8e12b0f9ed7c7409621d0a42dd69e Mon Sep 17 00:00:00 2001
From: Kanishka Narayan <37234086+kanishkan91@users.noreply.github.com>
Date: Tue, 22 Aug 2023 11:41:03 -0400
Subject: [PATCH] Final edits before merge

1. Adding netcdf4 as requirement
2.  Adding additional instructions for Rdemeter
---
 R_interface/README.md                         | 32 ++++++++++++++++++-
 .../demeter_post_process_example.py           |  5 +--
 setup.py                                      |  3 +-
 3 files changed, 36 insertions(+), 4 deletions(-)

diff --git a/R_interface/README.md b/R_interface/README.md
index df8fca0..798f2a7 100644
--- a/R_interface/README.md
+++ b/R_interface/README.md
@@ -1,2 +1,32 @@
 # Rdemeter
-This is an R interface for demeter. 
+
+This is an R interface for demeter.
+
+To use the R functionality, please use the code below by activating the R proj file.
+
+User will first have to ensure that the python version of demeter is installed.
+
+After that, user can run the below to intialize Rdemeter. Note that the user will need to install the `reticulate` R
+package.
+
+```R
+
+devtools::load_all(.)
+Rdemeter <- port_model_to_R(model_name="demeter",
+                             path_to_python="where python for demeter is installed")
+```
+
+After this, the user can access any function from demeter in the `Rdemeter` object, by using `Rdemeter$function_name`.
+User can also make use of the convenience function below to pass a demeter config file from R-
+
+```R
+
+run_demeter_R(path_to_inputs=" Add path to config here",
+              write_outputs=TRUE)
+
+```
+
+
+
+
+
diff --git a/processing_scripts/demeter_post_process_example.py b/processing_scripts/demeter_post_process_example.py
index 1ee81bd..5f90687 100644
--- a/processing_scripts/demeter_post_process_example.py
+++ b/processing_scripts/demeter_post_process_example.py
@@ -1,4 +1,3 @@
-from demeter.post_process import demeter_plotter as plotter
 from demeter.post_process import Post_process_results as proc
 
 # Example on how to run post process results
@@ -12,8 +11,10 @@
 
 # Example on how to run plotter
 folder_path = "C:/Projects/demeter_EPPA/outputs/*"
-PFT_name = "PFT9"
+PFT_name = "PFT1"
 region_id = 0
 out_path = "C:/Projects/EPPA_plots/"
 
+from demeter.post_process import demeter_plotter as plotter
+
 plotter = plotter.LandCoverPlotter(folder_path, PFT_name, region_id, out_path)
diff --git a/setup.py b/setup.py
index 74d52e8..09f0c1c 100644
--- a/setup.py
+++ b/setup.py
@@ -25,6 +25,7 @@ def readme():
                       'scipy >=1.6.3',
                       'requests>=2.20.0',
                       'gcamreader>=1.2.5',
-                      'xarray >= 0.20.2'],
+                      'xarray >= 0.20.2',
+                      'netcdf4>= 1.6.4'],
     include_package_data=True
 )