-
Notifications
You must be signed in to change notification settings - Fork 44
243 lines (203 loc) · 11.3 KB
/
ubuntu-ci-x86_64-intel.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
name: ubuntu-ci-c6a-x86_64-intel-build
on:
pull_request:
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
defaults:
run:
shell: bash
jobs:
ubuntu-ci-c6a-x86_64-intel-build:
runs-on: [ubuntu-ci-c6a-x86_64]
steps:
- name: cleanup
run: |
pwd
ls -lart
set +e
find ./* -type d -exec chmod u+xw {} \;
set -e
rm -fr *
- name: checkout
uses: actions/checkout@v4
with:
submodules: true
- name: prepare-directories
run: |
mkdir -p /home/ubuntu/spack-stack/build-cache/
mkdir -p /home/ubuntu/spack-stack/source-cache/
- name: create-buildcache
run: |
# Get day of week to decide whether to use build caches or not
DOW=$(date +%u)
# Monday is 1 ... Sunday is 7
if [[ $DOW == 7 ]]; then
export USE_BINARY_CACHE=false
echo "Ignore existing binary cache for creating buildcache environment"
else
export USE_BINARY_CACHE=true
echo "Use existing binary cache for creating buildcache environment"
fi
# Set up spack-stack
source ./setup.sh
export ENVNAME=ue-intel-2021.10.0-buildcache
export ENVDIR=$PWD/envs/${ENVNAME}
spack stack create env --site linux.default --template unified-dev --name ${ENVNAME} --compiler intel
spack env activate ${ENVDIR}
export SPACK_SYSTEM_CONFIG_PATH="${ENVDIR}/site"
# Find external packages
spack external find --scope system \
--exclude bison --exclude openssl \
--exclude curl --exclude python
spack external find --scope system sed
spack external find --scope system perl
spack external find --scope system wget
spack external find --scope system texlive
spack external find --scope system mysql
# Find compilers
spack compiler find --scope system
# For Intel
echo "" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo "- compiler:" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " spec: [email protected]" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " paths:" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " cc: /opt/intel/oneapi/compiler/2023.2.3/linux/bin/intel64/icc" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " cxx: /opt/intel/oneapi/compiler/2023.2.3/linux/bin/intel64/icpc" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " f77: /opt/intel/oneapi/compiler/2023.2.3/linux/bin/intel64/ifort" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " fc: /opt/intel/oneapi/compiler/2023.2.3/linux/bin/intel64/ifort" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " flags: {}" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " operating_system: ubuntu22.04" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " target: x86_64" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " modules: []" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " environment:" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " prepend_path:" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " LD_LIBRARY_PATH: '/opt/intel/oneapi/compiler/2023.2.3/linux/compiler/lib/intel64_lin'" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
echo " extra_rpaths: []" >> ${SPACK_SYSTEM_CONFIG_PATH}/compilers.yaml
# Need to find external Intel MPI and annotate with the
# correct compiler, no way to do that with spack commands.
echo "" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " intel-oneapi-mpi:" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " buildable: false" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " externals:" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " - spec: [email protected]%[email protected]" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " prefix: /opt/intel/oneapi" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
# Add external Intel MKL and oneAPI runtime
echo "" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " intel-oneapi-mkl:" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " externals:" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " - spec: [email protected]%[email protected]" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " prefix: /opt/intel/oneapi" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
#echo " intel-oneapi-runtime:" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
#echo " externals:" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
#echo " - spec: [email protected]%[email protected]" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
#echo " prefix: /opt/intel/oneapi" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
# Add external qt@5 to build ecflow
echo "" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " qt::" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " buildable: False" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " externals:" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " - spec: [email protected]" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
echo " prefix: /usr" >> ${SPACK_SYSTEM_CONFIG_PATH}/packages.yaml
export -n SPACK_SYSTEM_CONFIG_PATH
# For buildcaches
spack config add config:install_tree:padded_length:200
# Set compiler and MPI specs
spack config add "packages:all:providers:mpi:[[email protected]]"
spack config add "packages:all:compiler:[[email protected], [email protected]]"
# Add additional variants for MET packages, different from config/common/packages.yaml
spack config add "packages:met:variants:+python +grib2 +graphics +lidar2nc +modis"
# Don't generate qt module when using external package
spack config add "modules:default:tcl:exclude:[qt]"
# Concretize and check for duplicates
spack concretize 2>&1 | tee log.concretize.intel-2021.10.0-buildcache
${SPACK_STACK_DIR}/util/show_duplicate_packages.py -d log.concretize.intel-2021.10.0-buildcache -i fms -i crtm -i esmf -i mapl
# Add and update source cache
spack mirror add local-source file:///home/ubuntu/spack-stack/source-cache/
spack mirror create -a -d /home/ubuntu/spack-stack/source-cache/
# Add binary cache if requested
if [ "$USE_BINARY_CACHE" = true ] ; then
set +e
spack mirror add local-binary file:///home/ubuntu/spack-stack/build-cache/
spack buildcache update-index local-binary || (echo "No valid binary cache found, proceed without" && spack mirror rm local-binary)
set +e
echo "Packages in spack binary cache:"
spack buildcache list
fi
# Break installation up in pieces and create build caches in between
# This allows us to "spin up" builds that altogether take longer than
# six hours, and/or fail later in the build process.
# base-env
echo "base-env ..."
spack install --fail-fast --source --no-check-signature base-env 2>&1 | tee log.install.intel-2021.10.0-buildcache.base-env
spack buildcache create -a -u /home/ubuntu/spack-stack/build-cache/ base-env
# jedi-base-env
echo "jedi-base-env ..."
spack install --fail-fast --source --no-check-signature jedi-base-env 2>&1 | tee log.install.intel-2021.10.0-buildcache.jedi-base-env
spack buildcache create -a -u /home/ubuntu/spack-stack/build-cache/ jedi-base-env
# the rest
echo "unified-env ..."
spack install --fail-fast --source --no-check-signature 2>&1 | tee log.install.intel-2021.10.0-buildcache.unified-env
spack buildcache create -a -u /home/ubuntu/spack-stack/build-cache/
# Remove binary cache for next round of concretization
if [ "$USE_BINARY_CACHE" = true ] ; then
spack mirror rm local-binary
fi
# Remove buildcache config settings
spack config remove config:install_tree:padded_length
# Next steps: synchronize source and build cache to a central/combined mirror?
# Cleanup
spack clean -a
spack env deactivate
- name: create-env
run: |
source ./setup.sh
export BUILDCACHE_ENVNAME=ue-intel-2021.10.0-buildcache
export BUILDCACHE_ENVDIR=$PWD/envs/${BUILDCACHE_ENVNAME}
export ENVNAME=ue-intel-2021.10.0
export ENVDIR=$PWD/envs/${ENVNAME}
rsync -av --exclude='install' --exclude='spack.lock' --exclude='.spack_db' ${BUILDCACHE_ENVDIR}/ ${ENVDIR}/
spack env activate ${ENVDIR}
# Concretize
spack concretize --force 2>&1 | tee log.concretize.intel-2021.10.0
${SPACK_STACK_DIR}/util/show_duplicate_packages.py -d log.concretize.intel-2021.10.0 -i fms -i crtm -i esmf -i mapl
# Add binary cache back in and reindex it
spack mirror add local-binary file:///home/ubuntu/spack-stack/build-cache/
echo "Packages in combined spack build caches:"
spack buildcache list
# base-env
echo "base-env ..."
spack install --fail-fast --source --no-check-signature 2>&1 | tee log.install.intel-2021.10.0.unified-env
${SPACK_STACK_DIR}/util/ldd_check.py $SPACK_ENV 2>&1 | tee log.ldd_check
spack clean -a
spack module tcl refresh -y
spack stack setup-meta-modules
spack env deactivate
# Test environment chaining
echo "Test environment chaining"
spack stack create env --name chaintest --template empty --site linux.default --upstream ${ENVDIR}/install --compiler intel
# Retain config from upstream so we don't have to rebuild:
cp -r ${ENVDIR}/{site,common} $PWD/envs/chaintest/.
spack env activate ${PWD}/envs/chaintest
spack add [email protected]%intel
spack concretize | tee envs/chaintest/log.concretize
unwanted_duplicates=$(( cat envs/chaintest/log.concretize | grep -E '^ - ' | grep -Fv '[email protected]' || true ) | wc -l)
if [ ${unwanted_duplicates} -gt 0 ]; then echo "Environment chaining test failed"; exit 1; fi
spack env deactivate
- name: test-env
run: |
source /etc/profile.d/modules.sh
module use /home/ubuntu/spack-stack/modulefiles
export ENVNAME=ue-intel-2021.10.0
export ENVDIR=$PWD/envs/${ENVNAME}
ls -l ${ENVDIR}/install/modulefiles/Core
module use ${ENVDIR}/install/modulefiles/Core
module load stack-intel/2021.10.0
module load stack-intel-oneapi-mpi/2021.10.0
module load stack-python/3.11.7
module available
module load jedi-ufs-env
module load ewok-env
module load soca-env
module list