run NER/CR over all textual metadata fields

[cmungall]

Execute RUNner over

• study table (see fetch study metadata #1)
• sample table

Run over all textual fields, in particular:

• description fields
• envo triad fiels

Vocabularies: ENVO, CHEBI, NCBITaxon in text fields, specifically

this can then be used to repair the tsv to insert the correct identifier for the ENVO class; also for prediction

[hrshdhgd]

I have completed my first pass at running NER against the metadata. Note I have only used ENVO as a dictionary for starters. We could add more ontologies as deemed necessary. The output can be downloaded from here.

@cmungall ; @wdduncan ; @realmarcin