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CHANGELOG.md

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Changes

0.1.2

  • New version of architecture-setup: 3.1.13
  • Updated config file: now includes OxoG for Collaboratory, as well as updates to other workflows' configurations.
  • Changed path to server-tags to be absolute path, in mustache file.

0.1.1

  • Added the begining of an OpenStack-specific config document.
  • Fixed incorrect consonance version number in mustache file.

0.1.0

  • Major changes:
  • Support for non-Amazon clouds environments:
    • Azure
      • New script to create management certificates
      • New Azure-specific questions in bootstrap script and in sysconfig
    • OpenStack.
      • New OpenStack-specific questions in bootstrap script and in sysconfig
      • new sysconfig option "--os_env_name" to specify which OpenStack environment settings to use for a workflow.
  • Some documentation updates
  • Spot-pricing for Amazon
  • Many other smaller bug fixes.

0.0.7

  • Minor documentation updates
  • Added new "--keep_failed" option for generator to prevent failed workers from being reaped (useful for debugging)
  • Fixed some logic bugs in generator related to updating the master config file.
  • Minor updates to install_bootstrap (changed wording of questions, cleaned up some old code).
  • Added version numbers to workflow names in descriptors in workflowlister.py
  • Set reap_failed_workers and check_previous_job_hash to null in mustache template - these will be directly set by the generator.
  • A number of smaller bug fixes.

0.0.6

  • Updated documentation
  • Added BWA tutorial
  • Code fixes:
  • Fixes for working with workflows that are stored in S3
  • Reset "check_previous_job_hash" back to True
  • Added BWA to workflow lister with new AMI ID
  • Updated consonance version to 1.1-beta.rc.0
  • Set "reap_failed_workers" to True in mustache template, so ALL workers will be reaped by default.

0.0.5

  • Updated documentation
  • Added "--force" option for generator which will change config/masterConfig.ini:check_previous_job_hash to false
  • Cleaned up some of the code for provisioner/coordinator control
  • Added new "job_results" sub command to "status" command to write jobs results (stdout or stderr) to files.
  • Added a "--force" option to sysconfig
  • update version of consonance (arch3) to 1.1-beta.6
  • Pancancer template: Remove slack_token; fixed "youxia_reaper_parameters"; added "reap_failed_workers"
  • updated workflow lister to only show HelloWorld (with new AMI ID) until other workflows are ready.