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Create plotly versions of selected matplotlib visualizations #610

Merged
merged 6 commits into from
Nov 8, 2023
Merged

Create plotly versions of selected matplotlib visualizations #610

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c241faf
Create ploty versions of selected matplotlib visualizations
yannikschaelte Jul 16, 2023
720af8d
update r install instructions
yannikschaelte Jul 16, 2023
7162517
fix pandas float deprecation warnings
yannikschaelte Jul 16, 2023
95f4709
fixarray ndim > 0 float extraction deprecationwarning
yannikschaelte Jul 16, 2023
dbc20d8
Merge branch 'develop' into feature_plotly
yannikschaelte Aug 24, 2023
7f241e6
Merge branch 'develop' into feature_plotly
stephanmg Nov 8, 2023
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4 changes: 2 additions & 2 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@

repos:
- repo: https://github.com/psf/black
rev: 23.1.0
rev: 23.7.0
hooks:
- id: black
description: The uncompromising code formatter
Expand All @@ -27,7 +27,7 @@ repos:
name: isort (pyi)
types: [pyi]
- repo: https://github.com/nbQA-dev/nbQA
rev: 1.6.1
rev: 1.7.0
hooks:
- id: nbqa-black
- id: nbqa-pyupgrade
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2 changes: 1 addition & 1 deletion pyabc/transition/jump.py
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Expand Up @@ -142,4 +142,4 @@ def pdf(
]
)

return pds if pds.size != 1 else float(pds)
return pds if pds.size != 1 else float(pds[0])
33 changes: 29 additions & 4 deletions pyabc/visualization/__init__.py
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Expand Up @@ -13,11 +13,18 @@
plot_contour_matrix,
plot_contour_matrix_lowlevel,
)
from .credible import plot_credible_intervals, plot_credible_intervals_for_time
from .credible import (
plot_credible_intervals,
plot_credible_intervals_for_time,
plot_credible_intervals_plotly,
)
from .data import plot_data_callback, plot_data_default
from .distance import plot_distance_weights
from .effective_sample_size import plot_effective_sample_sizes
from .epsilon import plot_epsilons
from .effective_sample_size import (
plot_effective_sample_sizes,
plot_effective_sample_sizes_plotly,
)
from .epsilon import plot_epsilons, plot_epsilons_plotly
from .histogram import (
plot_histogram_1d,
plot_histogram_1d_lowlevel,
Expand All @@ -29,26 +36,44 @@
from .kde import (
plot_kde_1d,
plot_kde_1d_highlevel,
plot_kde_1d_highlevel_plotly,
plot_kde_1d_plotly,
plot_kde_2d,
plot_kde_2d_highlevel,
plot_kde_2d_highlevel_plotly,
plot_kde_2d_plotly,
plot_kde_matrix,
plot_kde_matrix_highlevel,
plot_kde_matrix_highlevel_plotly,
plot_kde_matrix_plotly,
)
from .model_probabilities import (
plot_model_probabilities,
plot_model_probabilities_plotly,
)
from .model_probabilities import plot_model_probabilities
from .sample import (
plot_acceptance_rates_trajectory,
plot_acceptance_rates_trajectory_plotly,
plot_lookahead_acceptance_rates,
plot_lookahead_evaluations,
plot_lookahead_final_acceptance_fractions,
plot_sample_numbers,
plot_sample_numbers_plotly,
plot_sample_numbers_trajectory,
plot_sample_numbers_trajectory_plotly,
plot_total_sample_numbers,
plot_total_sample_numbers_plotly,
)
from .sankey import plot_sensitivity_sankey
from .walltime import (
plot_eps_walltime,
plot_eps_walltime_lowlevel,
plot_eps_walltime_lowlevel_plotly,
plot_eps_walltime_plotly,
plot_total_walltime,
plot_total_walltime_plotly,
plot_walltime,
plot_walltime_lowlevel,
plot_walltime_lowlevel_plotly,
plot_walltime_plotly,
)
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