-
Notifications
You must be signed in to change notification settings - Fork 44
/
setup.cfg
139 lines (126 loc) · 3.09 KB
/
setup.cfg
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
##########################
# Setup.py Configuration #
##########################
[metadata]
name = pyabc
version = attr: pyabc.version.__version__
description = Distributed, likelihood-free ABC-SMC inference
long_description = file: README.rst
long_description_content_type = text/x-rst
# URLs
url = https://github.com/icb-dcm/pyabc
download_url = https://github.com/icb-dcm/pyabc/releases
project_urls =
Bug Tracker = https://github.com/icb-dcm/pyabc/issues
Documentation = https://pyabc.readthedocs.io
Changelog = https://github.com/ICB-DCM/pyABC/blob/main/CHANGELOG.rst
# Author information
author = The pyABC developers
author_email = [email protected]
maintainer = Yannik Schaelte
maintainer_email = [email protected]
# License information
license = BSD-3-Clause
license_file = LICENSE.txt
# Search tags
classifiers =
Development Status :: 5 - Production/Stable
License :: OSI Approved :: BSD License
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3.12
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.10
keywords =
likelihood-free
inference
abc
approximate bayesian computation
sge
distributed
[build-system]
requires =
wheel
setuptools
[options]
install_requires =
numpy >= 1.23.5
scipy >= 1.5.2
pandas >= 2.0.1
cloudpickle >= 1.5.0
scikit-learn >= 0.23.1
click >= 7.1.2
redis >= 2.10.6
distributed >= 2022.10.2
matplotlib >= 3.3.0
sqlalchemy
jabbar >= 0.0.10
gitpython >= 3.1.7
python_requires = >=3.10
# not zip safe b/c of Flask templates
zip_safe = False
include_package_data = True
# Where is my code
packages = find:
[options.extras_require]
webserver-flask =
flask-bootstrap >= 3.3.7.1
flask >= 1.1.2
bokeh >= 3.0.1
webserver-dash =
dash >= 2.11.1
dash-bootstrap-components >= 1.4.2
pyarrow =
pyarrow >= 6.0.0
R =
rpy2 >= 3.4.4
cffi >= 1.14.5
ipython >= 7.18.1
pygments >= 2.6.1
julia =
julia >= 0.5.7
pygments >= 2.6.1
copasi =
copasi-basico >= 0.8
ot =
pot >= 0.7.0
petab =
petab >= 0.2.0
amici =
amici >= 0.18.0
yaml2sbml =
yaml2sbml >= 0.2.1
migrate =
alembic >= 1.5.4
plotly =
plotly >= 5.3.1
kaleido >= 0.2.1
autograd =
autograd >= 1.3
examples =
notebook >= 6.1.4
doc =
sphinx >= 8.1.3
nbsphinx >= 0.9.5
nbconvert >= 7.16.4
sphinx-rtd-theme >= 1.2.0
sphinx-autodoc-typehints >= 1.18.3
ipython >= 8.4.0
test =
pytest >= 5.4.3
pytest-cov >= 2.10.0
pytest-rerunfailures >= 9.1.1
test-petab =
petabtests >= 0.0.0a6
[options.entry_points]
console_scripts =
abc-server-flask = pyabc.visserver.server_flask:run_app
abc-server-dash = pyabc.visserver.server_dash:run_app
abc-server = pyabc.visserver.server_dash:run_app
abc-redis-worker = pyabc.sampler.redis_eps.cli:work
abc-redis-manager = pyabc.sampler.redis_eps.cli:manage
abc-export = pyabc.storage.db_export:main
abc-migrate = pyabc.storage.migrate:migrate
[bdist_wheel]
# Requires python 3
universal = False