.gitignore

*/build/*
/build*/
CMakeLists.txt.user
/data/*
/ThirdParty/*
/doc/Doxyfile
/doc/_exhale_doxygen_output/
/doc/cpp_api/
/doc/_autosummary/
.project
.pydevproject
.idea/*
.settings/
__pycache__/
*.pyc
*.mexa64
.ipynb_checkpoints/
*deleteme*
.directory
*/swig/*_wrap.cpp
/amici/examples/steadystate/model_steadystate_scaled
/activate

# snakemake
.snakemake/
/snakemake/results
# amici
deps/AMICI/python/sdist/amici.egg-info/
deps/AMICI/python/sdist/amici/amici.py
deps/AMICI/python/sdist/amici/amici_without_hdf5.py
deps/AMICI/python/sdist/amici/amici_wrap.cxx
deps/AMICI/python/sdist/amici/amici_wrap_without_hdf5.cxx
deps/AMICI/python/sdist/amici/version.txt

python/test_*.png


*.egg-info
*.log

/benchmark_collection/*_*[0-9][0-9][0-9][0-9]/
/benchmark_collection/parpe_*_*[0-9][0-9][0-9][0-9]*/

# breathe-generatd files
doc/source/api/


# test files
tests/petab-test-suite/
test_*.png
examples/parpeamici/steadystate/*.h5
# containers
/container/charliecloud/parpe_base/parpe.tar.gz
*.sif