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TAD_calculator makes incorrect TAD calls. It only makes correct calls on simulation data. Can you help me with this problem? Thanks.
My data's TAD_calculator result:
Singularity> python3 /bin/TADsplimer.py TAD_calculator -c /home/zjiang/software/tadsplimer/input/IKDN7002/1.txt -u 1.7 -d 0.2 -o "/home/zjiang/software/tadsplimer/input/IKDN7002_chr1_TAD" $ cat 1.6500.7500.subchr.TAD.merge.txt 0.000000000000000000e+00 0.000000000000000000e+00 0.000000000000000000e+00 0.000000000000000000e+00 5.000000000000000000e+02 5.000000000000000000e+02 0.000000000000000000e+00 1.000000000000000000e+03 1.000000000000000000e+03 0.000000000000000000e+00 1.500000000000000000e+03 1.500000000000000000e+03 0.000000000000000000e+00 2.000000000000000000e+03 2.000000000000000000e+03 0.000000000000000000e+00 2.500000000000000000e+03 2.500000000000000000e+03 0.000000000000000000e+00 3.000000000000000000e+03 3.000000000000000000e+03 0.000000000000000000e+00 3.500000000000000000e+03 3.500000000000000000e+03 0.000000000000000000e+00 4.000000000000000000e+03 4.000000000000000000e+03 0.000000000000000000e+00 4.500000000000000000e+03 4.500000000000000000e+03 0.000000000000000000e+00 5.000000000000000000e+03 5.000000000000000000e+03 0.000000000000000000e+00 5.500000000000000000e+03 5.500000000000000000e+03 0.000000000000000000e+00 6.000000000000000000e+03 6.000000000000000000e+03 0.000000000000000000e+00 6.500000000000000000e+03 6.500000000000000000e+03 0.000000000000000000e+00 7.000000000000000000e+03 7.000000000000000000e+03 0.000000000000000000e+00 7.500000000000000000e+03 7.500000000000000000e+03 0.000000000000000000e+00 8.000000000000000000e+03 8.000000000000000000e+03 0.000000000000000000e+00 8.500000000000000000e+03 8.500000000000000000e+03 0.000000000000000000e+00 9.000000000000000000e+03 9.000000000000000000e+03 0.000000000000000000e+00 9.500000000000000000e+03 9.500000000000000000e+03 0.000000000000000000e+00 1.000000000000000000e+04 1.000000000000000000e+04 0.000000000000000000e+00 1.050000000000000000e+04 1.050000000000000000e+04 0.000000000000000000e+00 1.100000000000000000e+04 1.100000000000000000e+04 0.000000000000000000e+00 1.150000000000000000e+04 1.150000000000000000e+04 0.000000000000000000e+00 1.200000000000000000e+04 1.200000000000000000e+04 0.000000000000000000e+00 1.250000000000000000e+04 1.250000000000000000e+04 0.000000000000000000e+00 1.300000000000000000e+04 1.300000000000000000e+04 0.000000000000000000e+00 1.350000000000000000e+04 1.350000000000000000e+04 0.000000000000000000e+00 1.400000000000000000e+04 1.400000000000000000e+04 0.000000000000000000e+00 1.450000000000000000e+04 1.450000000000000000e+04 0.000000000000000000e+00 1.500000000000000000e+04 1.500000000000000000e+04 0.000000000000000000e+00 1.550000000000000000e+04 1.550000000000000000e+04 0.000000000000000000e+00 1.600000000000000000e+04 1.600000000000000000e+04 0.000000000000000000e+00 1.650000000000000000e+04 1.650000000000000000e+04 0.000000000000000000e+00 1.700000000000000000e+04 1.700000000000000000e+04 0.000000000000000000e+00 1.750000000000000000e+04 1.750000000000000000e+04 0.000000000000000000e+00 1.800000000000000000e+04 1.800000000000000000e+04 0.000000000000000000e+00 1.850000000000000000e+04 1.850000000000000000e+04 0.000000000000000000e+00 1.900000000000000000e+04 1.900000000000000000e+04 0.000000000000000000e+00 1.950000000000000000e+04 1.950000000000000000e+04
simulation data's TAD_calculator result:
Singularity> python3 /bin/TADsplimer.py TAD_calculator -c simulation_merge.txt -u 1.7 -d 0.2 -o "/home/zjiang/software/tadsplimer/github/example" $ cat simulation_merge.0.1000.subchr.TAD.merge.txt 8.338754493097589870e-01 1.000000000000000000e+02 2.910000000000000000e+02 8.576901150277900232e-01 2.870000000000000000e+02 3.820000000000000000e+02 8.533736117325949611e-01 3.880000000000000000e+02 4.740000000000000000e+02 9.271438708128589834e-01 4.840000000000000000e+02 6.220000000000000000e+02 9.808470451652480104e-01 6.270000000000000000e+02 9.020000000000000000e+02 8.585633319398340291e-01 9.010000000000000000e+02 9.830000000000000000e+02
The text was updated successfully, but these errors were encountered:
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TAD_calculator makes incorrect TAD calls. It only makes correct calls on simulation data. Can you help me with this problem? Thanks.
My data's TAD_calculator result:
simulation data's TAD_calculator result:
The text was updated successfully, but these errors were encountered: