From faf2258d98a9611a219fd138759fbf15101d0905 Mon Sep 17 00:00:00 2001 From: Colin Date: Thu, 11 Mar 2021 16:10:58 -0700 Subject: [PATCH] [update docs] release 1.16.11 --- package.json | 2 +- release-notes.md | 2 +- src/JBrowse/package.json | 2 +- website/blog/2021-03-11-jbrowse-1-16-11.md | 49 ++++++++++++++++++++++ website/siteConfig.js | 2 +- 5 files changed, 53 insertions(+), 4 deletions(-) create mode 100644 website/blog/2021-03-11-jbrowse-1-16-11.md diff --git a/package.json b/package.json index adae6124a4..aa7896b7a0 100644 --- a/package.json +++ b/package.json @@ -1,7 +1,7 @@ { "name": "@gmod/jbrowse", "main": "browser/main.js", - "version": "1.16.11-alpha.0", + "version": "1.16.11", "description": "JBrowse - client-side genome browser", "repository": "https://github.com/GMOD/jbrowse.git", "scripts": { diff --git a/release-notes.md b/release-notes.md index ea2544becf..cc0f1b3aa2 100644 --- a/release-notes.md +++ b/release-notes.md @@ -1,4 +1,4 @@ -{{$NEXT}} +# Release 1.16.11 2021-03-11 23:10:58 UTC ## Minor improvements diff --git a/src/JBrowse/package.json b/src/JBrowse/package.json index 4afd9ea462..d41875dbab 100644 --- a/src/JBrowse/package.json +++ b/src/JBrowse/package.json @@ -1,6 +1,6 @@ { "name": "JBrowse", - "version": "1.16.11-alpha.0", + "version": "1.16.11", "copyright":"© 2007-2017 The Evolutionary Software Foundation", "main": "main", "dependencies": { diff --git a/website/blog/2021-03-11-jbrowse-1-16-11.md b/website/blog/2021-03-11-jbrowse-1-16-11.md new file mode 100644 index 0000000000..99573125b2 --- /dev/null +++ b/website/blog/2021-03-11-jbrowse-1-16-11.md @@ -0,0 +1,49 @@ +--- +layout: post +title: JBrowse 1.16.11 maintenance release +date: 2021-03-11 +tags: ["News","Software releases"] +--- + +Hi all, + +This is a small maintanence release that fixes an issue that was seen with very +long CRAM reads and an issue that was seen with some users installing with +setup.sh producing an error. Thanks to everyone for their bug reports and +requests and for being patient with jbrowse 1 releases as we speed ahead with +jbrowse 2! + +* [JBrowse-1.16.11.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11.zip) - minified release +* [JBrowse-1.16.11-dev.zip](https://github.com/GMOD/jbrowse/archive/1.16.11-release.zip) - use this if you modify jbrowse source code or use plugins +* [JBrowse-1.16.11-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-win32-x64.zip) +* [JBrowse-1.16.11-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-linux-x64.zip) +* [JBrowse-1.16.11-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-darwin-x64.zip) + + + + +## Minor improvements + +- Add optional track label field for RegexSequenceSearch (issue #1553, + @cmdcolin, @Rhinogradentia) + +- Bump @gmod/tabix for textdecoder speedup for very large tabix files + (@arpanda, @cmdcolin, issue #1569) + +- Increase GFF3Tabix chunkSizeLimit to avoid it being hit on relatively small + files + +## Bug fixes + +- Bump @gmod/cram for fix for ultra long reads (https://github.com/GMOD/cram-js/pull/84) + +- Fix issue that some users were seeing with "Commit hash required" when + running setup.sh. Thanks to @GFJHogue and @hans-vg for reporting (issue #1555) + +- Bump @gmod/bam which fixes some unsigned BAM tags being reported with a + negative number + +- Bump @gmod/bam and @gmod/tabix for and some fixes with reg2bins and chunk + merging for large chromosomes e.g. wheat. Thanks to @jrobinso for reporting + (https://github.com/GMOD/tabix-js/issues/118) + diff --git a/website/siteConfig.js b/website/siteConfig.js index 67a5c98cd0..c0c99f503e 100644 --- a/website/siteConfig.js +++ b/website/siteConfig.js @@ -27,7 +27,7 @@ const createVariableInjectionPlugin = variables => { }; const v = { - "version": "1.16.10" + "version": "1.16.11" }; const siteVariables = { version: v.version,