diff --git a/Fred2/test/TestProtein.py b/Fred2/test/TestProtein.py index 0da167c7..94a863a2 100644 --- a/Fred2/test/TestProtein.py +++ b/Fred2/test/TestProtein.py @@ -9,7 +9,7 @@ from Fred2.test.VariantsForTesting import * from Fred2.Core.Protein import Protein -from Fred2.Core.Generator import generate_peptides_from_proteins, generate_transcripts_from_tumor_variants +from Fred2.Core.Generator import generate_peptides_from_proteins from Fred2.Core.Generator import generate_proteins_from_transcripts from Fred2.IO.ADBAdapter import EIdentifierTypes @@ -127,14 +127,6 @@ def test3_protein_from_variants(self): ## GENERATE Peptides: peptides = generate_peptides_from_proteins(proteins,2) - def test1_protein_from_tumor_variants(self): - dummy_db = DummyAdapter() - normal_vars = [var_n2] - tumor_vars = [var_t1] - t = list(generate_transcripts_from_tumor_variants(normal_vars, tumor_vars, dummy_db, EIdentifierTypes.REFSEQ)) - for trans in generate_transcripts_from_tumor_variants(normal_vars, tumor_vars, dummy_db, - EIdentifierTypes.REFSEQ): - print "Tumor trans", repr(trans) def test4_peptides_from_variants(self): """