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Calculate average DNA methylation across known TFBS footprints #28

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oneillkza opened this issue Oct 20, 2017 · 1 comment
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Calculate average DNA methylation across known TFBS footprints #28

oneillkza opened this issue Oct 20, 2017 · 1 comment
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@oneillkza
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Description

As a bioinformatician, I would like to calculate the average DNA methylation across a series of known DNA-associated protein binding footprint regions based on ChIP-seq experiments, using data from the LOLA package (ie the ENCODE and Codex data sets), in order to later find binding footprints associated with DMRs/conditions.

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@oneillkza has code which can be adapted for this
@oneillkza oneillkza mentioned this issue Oct 20, 2017
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@oneillkza
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Merged into #29

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@oneillkza