diff --git a/cwl/tools/preprocess.cwl b/cwl/tools/preprocess.cwl index 201ff26..8bf4a4c 100644 --- a/cwl/tools/preprocess.cwl +++ b/cwl/tools/preprocess.cwl @@ -12,7 +12,12 @@ outputs: combined: type: File outputSource: mergeSymmetric/combined - + methBW: + type: File + outputSource: methylationBigWIG/methBW + covBW: + type: File + outputSource: methylationBigWIG/covBW steps: convertMethylation: @@ -25,3 +30,9 @@ steps: in: toCombine: convertMethylation/converted out: [combined] + methylationBigWIG: + run: methToBigWig.cwl + in: + toConvert: mergeSymmetric/combined + out: [methBW, covBW] +