Farlik_2016_Example

Example data set using Farlik 2016 SC-WGBS data

How to run

Copy or link the Screw directory as a subdirectory of this one.
Run run_farlik_pipeline.sh
Note: we are having some trouble with Docker hashtags and quay.io, so this may or may not work. If you can get the latest build of the Docker image, with the latest Screw code contained within, it should run.

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
data		data
.gitattributes		.gitattributes
LICENSE		LICENSE
README.md		README.md
heatmap.txt		heatmap.txt
hg19_enhancer_atlas_cd34.bed		hg19_enhancer_atlas_cd34.bed
run_farlik_pipeline.sh		run_farlik_pipeline.sh