ndppp_prep_cal.cwl

# below the definition in the prefactor parset
#
# msin                   = createmap_cal.output.mapfile # The input data.
# msin.datacolumn        = DATA
# msin.baseline          = CS*&; RS*&; CS*&RS*
# msout.datacolumn       = DATA
# msout.writefullresflag = False
# msout.overwrite        = True ############
# steps                  = [flag,filter,avg,flagamp]
# flag.type              = preflagger
# flag.baseline          = {{ flag_baselines }}
# filter.type            = filter
# filter.baseline        = CS*, RS*&&
# filter.remove          = true                     # fully kick out the international stations.
# avg.type               = average
# avg.timestep           = {{ avg_timestep }}       # average to 4 second intervals , PLEASE ADJUST!
# avg.freqstep           = {{ avg_freqstep }}       # average to 2 ch/SB , PLEASE ADJUST!
# flagamp.type           = preflagger
# flagamp.amplmin        = 1e-30

cwlVersion: v1.0
class: CommandLineTool
baseCommand: [NDPPP, msout=calibrated.MS]

label: "DPPP flag and average"

hints:
  DockerRequirement:
      dockerPull: kernsuite/prefactor

inputs:
  msin:
    type: Directory
    inputBinding:
      prefix: "msin="
      separate: False

  msin.datacolumn:
    type: string
    default: DATA
    inputBinding:
      prefix: "msin.datacolumn="
      separate: False

  msout.writefullresflag:
    type:
      type: enum
      symbols: ["True", "False"]
    default: "False"
    inputBinding:
      prefix: "msout.writefullresflag="
      separate: False

  msout.overwrite:
    type: 
      type: enum
      symbols: ["True", "False"]
    default: "True"
    inputBinding:
      prefix: "msout.overwrite="
      separate: False

  flag.type:
    type: string
    default: filter
    inputBinding:
      prefix: "flag.type="
      separate: False

  flag.baseline:
    type: string
    inputBinding:
      prefix: "flag.baseline="
      separate: False

  filter.type:
    type: string
    default: filter
    inputBinding:
      prefix: "filter.type="
      separate: False

  filter.baseline:
    type: string
    default: "CS*, RS*&&"
    inputBinding:
      prefix: "filter.baseline="
      separate: False

  filter.remove:
    type:
      type: enum
      symbols: ["True", "False"]
    default: "True"
    inputBinding:
      prefix: "filter.remove="
      separate: False

  avg.type:
    type: string
    default: average
    inputBinding:
      prefix: "avg.type="
      separate: False

  avg.timestep:
    type: int
    inputBinding:
      prefix: "avg.timestep="
      separate: False

  avg.freqstep:
    type: int
    inputBinding:
      prefix: "avg.freqstep="
      separate: False

  flagamp.type:
    type: string
    default: "preflagger"
    inputBinding:
      prefix: "flagamp.type="
      separate: False

  flagamp.amplmin:
    type: string
    default: "1e-30"
    inputBinding:
      prefix: "flagamp.amplmin="
      separate: False

  steps:
    type: string
    default: "[flag,filter,avg,flagamp]"
    inputBinding:
      prefix: "steps="
      separate: False

  baseline:
    type: string
    default: "[CS013HBA*]"
    inputBinding:
      prefix: "baseline="
      separate: False

  avg.timeresolution:
    type: int
    default: 4
    inputBinding:
      prefix: "average.timeresolution="
      separate: False

  avg.freqresolution:
    type: string
    default: "48.82kHz"
    inputBinding:
      prefix: "average.freqresolution="
      separate: False

outputs:
  msout:
    type: Directory
    outputBinding:
      glob: "calibrated.MS"


$namespaces:
  s: http://schema.org/
$schemas:
  - https://schema.org/version/latest/schema.rdf



s:license: "https://mit-license.org/"
s:author:
  s:person.url: "http://orcid.org/0000-0002-6136-3724"