build.yml

name: Build

on:
  pull_request:
    branches:
      - master
  push:
    branches:
      - master
    tags:
      - '*'

jobs:

  ### Linux build
  linux_build:
    runs-on: ubuntu-20.04
    strategy:
      matrix:
        config:
          - {cc: "gcc", cxx: "g++"}
          - {cc: "clang-10", cxx: "clang++-10"}

    steps:
    - uses: actions/checkout@v2
    - name: Install dependencies
      run: |
        sudo apt-get update
        sudo apt-get install libsqlite3-0 libsqlite3-dev cmake wget build-essential
        ./install_dependencies.sh linux
    - name: Compile and test
      run: |
        mkdir build && cd build && cmake -G "Unix Makefiles" -DCMAKE_CXX_COMPILER=${{ matrix.config.cxx }} -DCMAKE_C_COMPILER=${{ matrix.config.cc }} ..
        make -j2
        cd .. && ./build/bin/test_validation_suite
    - name: Rename release files
      if: ${{ matrix.config.cc == 'gcc' }}
      run: |
        mv build/bin/vcf_validator vcf_validator_linux
        mv build/bin/vcf_debugulator vcf_debugulator_linux
        mv build/bin/vcf_assembly_checker vcf_assembly_checker_linux
    - name: Upload vcf-validator
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'gcc' }}
      with:
        name: vcf_validator_linux
        path: vcf_validator_linux
    - name: Upload vcf-debugulator
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'gcc' }}
      with:
        name: vcf_debugulator_linux
        path: vcf_debugulator_linux
    - name: Upload vcf-assembly-checker
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'gcc' }}
      with:
        name: vcf_assembly_checker_linux
        path: vcf_assembly_checker_linux


  ### Mac OS build intel
  macos_build_intel:
    runs-on: macos-12
    strategy:
      matrix:
        config:
          - {cc: "gcc", cxx: "g++"}
          - {cc: "clang", cxx: "clang++"}

    steps:
    - uses: actions/checkout@v2
    - name: Install dependencies
      run: |
        #brew update
        HOMEBREW_NO_AUTO_UPDATE=1 brew install boost sqlite3 automake
        ./install_dependencies.sh osx
    - name: Compile and test
      run: |
        mkdir build && cd build && cmake -G "Unix Makefiles" -DCMAKE_CXX_COMPILER=${{ matrix.config.cxx }} -DCMAKE_C_COMPILER=${{ matrix.config.cc }} ..
        export LIBRARY_PATH=${LIBRARY_PATH}:/usr/local/opt/icu4c/lib:/usr/local/lib
        make -j2
        cd .. && ./build/bin/test_validation_suite
    - name: Rename release files
      if: ${{ matrix.config.cc == 'clang' }}
      run: |
        mv build/bin/vcf_validator vcf_validator_macos_x64
        mv build/bin/vcf_debugulator vcf_debugulator_macos_x64
        mv build/bin/vcf_assembly_checker vcf_assembly_checker_macos_x64
    - name: Upload vcf-validator
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'clang' }}
      with:
        name: vcf_validator_macos_x64
        path: vcf_validator_macos_x64
    - name: Upload vcf-debugulator
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'clang' }}
      with:
        name: vcf_debugulator_macos_x64
        path: vcf_debugulator_macos_x64
    - name: Upload vcf-assembly-checker
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'clang' }}
      with:
        name: vcf_assembly_checker_macos_x64
        path: vcf_assembly_checker_macos_x64

  ### Mac OS build arm
  macos_build_arm:
    runs-on: macos-14
    strategy:
      matrix:
        config:
          - {cc: "gcc", cxx: "g++"}
          - {cc: "clang", cxx: "clang++"}

    steps:
    - uses: actions/checkout@v2
    - name: Install dependencies
      run: |
        #brew update
        HOMEBREW_NO_AUTO_UPDATE=1 brew install boost sqlite3 automake libtool
        ./install_dependencies.sh osx
    - name: Compile and test
      run: |
        mkdir build && cd build && cmake -G "Unix Makefiles" -DCMAKE_CXX_COMPILER=${{ matrix.config.cxx }} -DCMAKE_C_COMPILER=${{ matrix.config.cc }} ..
        export LIBRARY_PATH=${LIBRARY_PATH}:/opt/homebrew/opt/icu4c/lib:/opt/homebrew/lib
        make -j2
        cd .. && ./build/bin/test_validation_suite
    - name: Rename release files
      if: ${{ matrix.config.cc == 'clang' }}
      run: |
        mv build/bin/vcf_validator vcf_validator_macos_arm64
        mv build/bin/vcf_debugulator vcf_debugulator_macos_arm64
        mv build/bin/vcf_assembly_checker vcf_assembly_checker_macos_arm64
    - name: Upload vcf-validator
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'clang' }}
      with:
        name: vcf_validator_macos_arm64
        path: vcf_validator_macos_arm64
    - name: Upload vcf-debugulator
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'clang' }}
      with:
        name: vcf_debugulator_macos_arm64
        path: vcf_debugulator_macos_arm64
    - name: Upload vcf-assembly-checker
      uses: actions/upload-artifact@v3
      if: ${{ matrix.config.cc == 'clang' }}
      with:
        name: vcf_assembly_checker_macos_arm64
        path: vcf_assembly_checker_macos_arm64


  ### Release job (tags only)
  create_release:
    if: startsWith(github.ref, 'refs/tags/')
    needs: [ linux_build, macos_build_intel, macos_build_arm ]
    runs-on: ubuntu-latest
    steps:
      - name: Download artifacts
        uses: actions/download-artifact@v3
        with:
          path: bin
      - name: Draft release
        uses: softprops/action-gh-release@v1
        with:
          draft: true
          files: ${{ github.workspace }}/bin/*/*
          fail_on_unmatched_files: true