From 4f8d1b15ffc24baa23e3cba340f9d0f2d660629c Mon Sep 17 00:00:00 2001 From: April Shen Date: Tue, 19 Dec 2023 08:36:27 +0000 Subject: [PATCH] update log statement --- .../repeat_expansion_variants/pipeline.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cmat/consequence_prediction/repeat_expansion_variants/pipeline.py b/cmat/consequence_prediction/repeat_expansion_variants/pipeline.py index 6002fcb5..9c2bff8f 100644 --- a/cmat/consequence_prediction/repeat_expansion_variants/pipeline.py +++ b/cmat/consequence_prediction/repeat_expansion_variants/pipeline.py @@ -274,7 +274,7 @@ def main(clinvar_xml, include_transcripts, output_consequences=None, output_data logger.info('No variants to process') return None - logger.info('Match each record to Ensembl gene ID and name') + logger.info(f'Match each record to Ensembl gene ID{", transcript ID," if include_transcripts else ""} and gene name') variants = annotate_ensembl_gene_info(variants, include_transcripts) logger.info('Determine variant type and whether the record is complete')