diff --git a/cmat/consequence_prediction/repeat_expansion_variants/pipeline.py b/cmat/consequence_prediction/repeat_expansion_variants/pipeline.py index 6002fcb5..9c2bff8f 100644 --- a/cmat/consequence_prediction/repeat_expansion_variants/pipeline.py +++ b/cmat/consequence_prediction/repeat_expansion_variants/pipeline.py @@ -274,7 +274,7 @@ def main(clinvar_xml, include_transcripts, output_consequences=None, output_data logger.info('No variants to process') return None - logger.info('Match each record to Ensembl gene ID and name') + logger.info(f'Match each record to Ensembl gene ID{", transcript ID," if include_transcripts else ""} and gene name') variants = annotate_ensembl_gene_info(variants, include_transcripts) logger.info('Determine variant type and whether the record is complete')