From 3d51900f9e3f14c837f53b6ee669c96549434f8c Mon Sep 17 00:00:00 2001 From: Huite Bootsma Date: Thu, 11 Apr 2024 16:41:46 +0200 Subject: [PATCH 1/4] Make things better --- .github/workflows/ci.yml | 28 +- .github/workflows/dependabot.yml | 7 + .gitignore | 6 +- pixi.lock | 30431 +++-------------------------- pixi.toml | 49 - pyproject.toml | 61 +- 6 files changed, 2872 insertions(+), 27710 deletions(-) create mode 100644 .github/workflows/dependabot.yml delete mode 100644 pixi.toml diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 7e66f0354..83cc5da09 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -18,32 +18,34 @@ jobs: uses: actions/setup-python@v2 - name: Run pre-commit uses: pre-commit/action@v2.0.3 - test: - runs-on: ubuntu-latest + name: ${{ matrix.pixi-environment }} - ${{ matrix.os }} + runs-on: ${{ matrix.os }} strategy: matrix: - python-version: - - "3.9" - - "3.10" - - "3.12" + os: + - ubuntu-latest + - macOS-latest + - windows-latest + pixi-environment: + - py312 + - py311 + - py310 steps: - name: Check out repo - uses: actions/checkout@v2 + uses: actions/checkout@v4 - name: Setup Pixi - uses: prefix-dev/setup-pixi@v0.3.0 - - name: Setup older Python versions - run: pixi add python=${{ matrix.python-version }} + uses: prefix-dev/setup-pixi@v0.5.1 - name: Run Tests - run: pixi run test + run: pixi run --environment ${{ matrix.pixi-environment }} test build: runs-on: ubuntu-latest steps: - name: Check out repo - uses: actions/checkout@v2 + uses: actions/checkout@v4 - name: Setup Pixi - uses: prefix-dev/setup-pixi@v0.3.0 + uses: prefix-dev/setup-pixi@v0.5.1 - name: Run Tests run: pixi run test - name: Publish Code Coverage diff --git a/.github/workflows/dependabot.yml b/.github/workflows/dependabot.yml new file mode 100644 index 000000000..700707ced --- /dev/null +++ b/.github/workflows/dependabot.yml @@ -0,0 +1,7 @@ +# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates +version: 2 +updates: + - package-ecosystem: "github-actions" + directory: "/" # Location of package manifests + schedule: + interval: "weekly" diff --git a/.gitignore b/.gitignore index 00c90d7d3..9f4e96543 100644 --- a/.gitignore +++ b/.gitignore @@ -96,7 +96,6 @@ venv/ ENV/ env.bak/ venv.bak/ -.pixi/ # Spyder project settings .spyderproject @@ -116,3 +115,8 @@ venv.bak/ # mypy .mypy_cache/ + +# pixi environments +.pixi +*.egg-info + diff --git a/pixi.lock b/pixi.lock index f6c6fabda..a26e9e1b8 100644 --- a/pixi.lock +++ b/pixi.lock @@ -1,27786 +1,2927 @@ -version: 3 -metadata: - content_hash: - linux-64: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - osx-64: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - osx-arm64: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - win-64: 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"https://deltares.github.io/xugrid/" -documentation = "https://deltares.github.io/xugrid/" -repository = "https://github.com/Deltares/xugrid" - -[tasks] -install = "python -m pip install --no-deps --editable ." -install-pre-commit = "pre-commit install" -pre-commit = "pre-commit run --all-files" -test = { depends_on = ["install"], cmd = "NUMBA_DISABLE_JIT=1 pytest --cov=xugrid --cov-report xml --cov-report term"} -docs = { depends_on = ["install"], cmd = "NUMBA_DISABLE_JIT=1 sphinx-build docs docs/_build"} -all = { depends_on = ["pre-commit", "test", "docs"]} -pypi-publish = { cmd = "rm --recursive --force dist && python -m build && twine check dist/* && twine upload dist/*" } - -[dependencies] -dask = "*" -geopandas = "*" -mapbox_earcut = "*" -matplotlib-base = "*" -netcdf4 = "*" -numba_celltree = "*" -pip = "*" -pooch = "*" -pre-commit = "*" -pydata-sphinx-theme = "*" -pymetis = "*" -pyproj = "*" -pytest = "*" -pytest-cov = "*" -python = ">=3.9" -ruff = "*" -shapely = ">=2.0" -scipy = "*" -sphinx = "*" -sphinx-gallery = "*" -xarray = "*" -zarr = "*" -ipykernel = "6.26.0.*" # So we can run examples -twine = "*" -hatchling = "1.21.0.*" -build = "0.7.0.*" diff --git a/pyproject.toml b/pyproject.toml index 069926c65..ba029224e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ name = "xugrid" description = "Xarray extension for unstructured grids" readme = { file = "README.rst", content-type = "text/x-rst" } maintainers = [{ name = "Huite Bootsma", email = "huite.bootsma@deltares.nl" }] -requires-python = ">=3.9" +requires-python = ">=3.10" dependencies = [ 'pandas', 'numba', @@ -25,9 +25,9 @@ classifiers = [ 'Programming Language :: Python', 'Operating System :: OS Independent', 'Programming Language :: Python :: 3', - 'Programming Language :: Python :: 3.9', 'Programming Language :: Python :: 3.10', 'Programming Language :: Python :: 3.11', + 'Programming Language :: Python :: 3.12', 'Programming Language :: Python :: Implementation :: CPython', 'Topic :: Scientific/Engineering', ] @@ -67,3 +67,60 @@ exclude_lines = [ "@abc.abstractmethod", "@abc.abstractproperty", ] + +[tool.pixi.project] +channels = ["conda-forge"] +platforms = ["win-64", "linux-64", "osx-64", "osx-arm64"] + +[tool.pixi.pypi-dependencies] +xugrid = { path = ".", editable = true } + +[tool.pixi.dependencies] +dask = "*" +geopandas = "*" +mapbox_earcut = "*" +matplotlib-base = "*" +netcdf4 = "*" +numba_celltree = "*" +pip = "*" +pooch = "*" +pre-commit = "*" +pydata-sphinx-theme = "*" +pymetis = "*" +pyproj = "*" +pytest = "*" +pytest-cov = "*" +python = ">=3.9" +ruff = "*" +shapely = ">=2.0" +scipy = "*" +sphinx = "*" +sphinx-gallery = "*" +xarray = "*" +zarr = "*" +ipykernel = "6.26.0.*" # So we can run examples +twine = "*" +build = "*" + +[tool.pixi.tasks] +install-pre-commit = "pre-commit install" +pre-commit = "pre-commit run --all-files" +test = "NUMBA_DISABLE_JIT=1 pytest --cov=xugrid --cov-report xml --cov-report term" +docs = "NUMBA_DISABLE_JIT=1 sphinx-build docs docs/_build" +all = { depends_on = ["pre-commit", "test", "docs"]} +pypi-publish = "rm --recursive --force dist && python -m build && twine check dist/* && twine upload dist/*" + +[tool.pixi.feature.py312.dependencies] +python = "3.12.*" + +[tool.pixi.feature.py311.dependencies] +python = "3.11.*" + +[tool.pixi.feature.py310.dependencies] +python = "3.10.*" + +[tool.pixi.environments] +default = { features = ["py312"], solve-group = "py312" } +py312 = { features = ["py312"], solve-group = "py312" } +py311 = ["py311"] +py310 = ["py310"] From 054812d84312590b33673fac1442cb9f1a0908e5 Mon Sep 17 00:00:00 2001 From: Huite Bootsma Date: Thu, 11 Apr 2024 16:50:31 +0200 Subject: [PATCH 2/4] update lockfile --- pixi.lock | 31381 ++++++++++++++++++++++++++++++++++++++++++++++++---- 1 file changed, 28941 insertions(+), 2440 deletions(-) diff --git a/pixi.lock b/pixi.lock index a26e9e1b8..595ca5248 100644 --- a/pixi.lock +++ b/pixi.lock @@ -7,111 +7,1295 @@ environments: 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+ version: 1.5.5 + build: hfc55251_0 + subdir: linux-64 + url: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.5-hfc55251_0.conda + sha256: 607cbeb1a533be98ba96cf5cdf0ddbb101c78019f1fda063261871dad6248609 + md5: 04b88013080254850d6c01ed54810589 + depends: + - libgcc-ng >=12 + - libstdcxx-ng >=12 + - libzlib >=1.2.13,<1.3.0a0 + license: BSD-3-Clause + license_family: BSD + size: 545199 + timestamp: 1693151163452 From 06ba247d2f87f083e6e860b643b8b68ef7ba02d9 Mon Sep 17 00:00:00 2001 From: Huite Bootsma Date: Thu, 11 Apr 2024 16:56:05 +0200 Subject: [PATCH 3/4] update lockfile --- .github/workflows/ci.yml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 83cc5da09..da91202da 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -22,6 +22,7 @@ jobs: name: ${{ matrix.pixi-environment }} - ${{ matrix.os }} runs-on: ${{ matrix.os }} strategy: + fail-fast: false matrix: os: - ubuntu-latest @@ -36,6 +37,8 @@ jobs: uses: actions/checkout@v4 - name: Setup Pixi uses: prefix-dev/setup-pixi@v0.5.1 + with: + manifest-path: pyproject.toml - name: Run Tests run: pixi run --environment ${{ matrix.pixi-environment }} test @@ -46,6 +49,8 @@ jobs: uses: actions/checkout@v4 - name: Setup Pixi uses: prefix-dev/setup-pixi@v0.5.1 + with: + manifest-path: pyproject.toml - name: Run Tests run: pixi run test - name: Publish Code Coverage From 88586c2c7a45d818e9894e42ac574ce013a9baae Mon Sep 17 00:00:00 2001 From: Huite Bootsma Date: Thu, 11 Apr 2024 16:58:14 +0200 Subject: [PATCH 4/4] Stop older tasks --- .github/workflows/ci.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index da91202da..dccf9ee10 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -8,6 +8,10 @@ on: branches: - main +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + jobs: lint: runs-on: ubuntu-latest