From b3ce93e01dad51f71909dab20bb7f69e599e5f6e Mon Sep 17 00:00:00 2001
From: Daniel Chang <mwdchang@gmail.com>
Date: Mon, 4 Dec 2023 10:44:52 -0500
Subject: [PATCH] ode.observables is not a required field (#145)

---
 src/operations.jl | 15 ++++++++++-----
 1 file changed, 10 insertions(+), 5 deletions(-)

diff --git a/src/operations.jl b/src/operations.jl
index 5d2396b..c03cb5c 100644
--- a/src/operations.jl
+++ b/src/operations.jl
@@ -16,7 +16,10 @@ function amr_get(amr::JSON3.Object, ::Type{ODESystem})
     statenames = [Symbol(s.id) for s in model.states]
     statevars  = [only(@variables $s) for s in statenames]
     statefuncs = [only(@variables $s(t)) for s in statenames]
-    obsnames   = [Symbol(o.id) for o in ode.observables]
+    obsnames   = []
+    if haskey(ode, "observables")
+        obsnames = [Symbol(o.id) for o in ode.observables]
+    end
     obsvars    = [only(@variables $o) for o in obsnames]
     obsfuncs   = [only(@variables $o(t)) for o in obsnames]
     allvars    = [statevars; obsvars]
@@ -48,9 +51,11 @@ function amr_get(amr::JSON3.Object, ::Type{ODESystem})
     subst = merge!(Dict(allvars .=> allfuncs), Dict(paramvars .=> paramvars))
     eqs = [D(statef) ~ substitute(eqs[state], subst) for (state, statef) in (statenames .=> statefuncs)]
 
-    for (o, ofunc) in zip(ode.observables, obsfuncs)
-        expr = substitute(MathML.parse_str(o.expression_mathml), subst)
-        push!(eqs, ofunc ~ expr)
+    if haskey(ode, "observables")
+        for (o, ofunc) in zip(ode.observables, obsfuncs)
+            expr = substitute(MathML.parse_str(o.expression_mathml), subst)
+            push!(eqs, ofunc ~ expr)
+        end
     end
 
     defaults = [statefuncs .=> initial_vals; sym_defs]
@@ -397,4 +402,4 @@ function sciml_service_l2loss(pvals, (prob, pkeys, data)::Tuple{Vararg{Any, 3}})
         tot_loss += sum((sol(ts[i]; idxs = datakeys[i]) .- timeseries[i]) .^ 2)
     end
     return tot_loss, sol, ts
-end
\ No newline at end of file
+end