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chip.croo.json
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chip.croo.json
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{
"chip.fingerprint": {
"plot": {
"path": "qc/${basename}",
"table": "QC and logs/Jensen-Shannon distance plot"
}
},
"chip.jsd": {
"plot": {
"path": "qc/${basename}",
"table": "QC and logs/Jensen-Shannon distance plot",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"JSD\nPlot\"]"
}
},
"chip.bwa_ctl": {
"bam": {
"path": "align/ctl${i+1}/${basename}",
"table": "Alignment/Control ${i+1}/Raw BAM from BWA"
},
"flagstat_qc": {
"path": "qc/ctl${i+1}/${basename}",
"table": "QC and logs/Control ${i+1}/Samtools flagstat for Raw BAM"
}
},
"chip.align_ctl": {
"bam": {
"path": "align/ctl${i+1}/${basename}",
"table": "Alignment/Control ${i+1}/Raw BAM from aligner",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"BAM\"]",
"subgraph": "cluster_ctl${i+1}"
},
"samstat_qc": {
"path": "qc/ctl${i+1}/${basename}",
"table": "QC and logs/Control ${i+1}/SAMstats log for Raw BAM",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"SAMstats\nQC\"]",
"subgraph": "cluster_ctl${i+1}"
}
},
"chip.filter_ctl": {
"nodup_bam": {
"path": "align/ctl${i+1}/${basename}",
"table": "Alignment/Control ${i+1}/Filtered BAM",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Filt/deduped\nBAM\"]",
"subgraph": "cluster_ctl${i+1}"
},
"flagstat_qc": {
"path": "qc/ctl${i+1}/${basename}",
"table": "QC and logs/Control ${i+1}/Samtools flagstat for filtered BAM"
},
"samstat_qc": {
"path": "qc/ctl${i+1}/${basename}",
"table": "QC and logs/Control ${i+1}/SAMstats log for filtered BAM",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"SAMstats\nQC\"]",
"subgraph": "cluster_ctl${i+1}"
},
"dup_qc": {
"path": "qc/ctl${i+1}/${basename}",
"table": "QC and logs/Control ${i+1}/Dup QC for filtered BAM"
},
"pbc_qc": {
"path": "qc/ctl${i+1}/${basename}",
"table": "QC and logs/Control ${i+1}/PBC QC for filtered BAM"
},
"lib_complexity_qc": {
"path": "qc/ctl${i+1}/${basename}",
"table": "QC and logs/Control ${i+1}/Library complexity QC for filtered BAM",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"LibCmplx\nQC\"]",
"subgraph": "cluster_ctl${i+1}"
},
"mito_dup_log": {
"path": "qc/ctl${i+1}/${basename}",
"table": "QC and logs/Control ${i+1}/Mito dup log for filtered BAM"
}
},
"chip.bam2ta_ctl": {
"ta": {
"path": "align/ctl${i+1}/${basename}",
"table": "Alignment/Control ${i+1}/TAG-ALIGN",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"TAG-ALIGN\"]",
"subgraph": "cluster_ctl${i+1}"
}
},
"chip.pool_ta_ctl": {
"ta_pooled": {
"path": "align/pooled-ctl/${basename}",
"table": "Alignment/Pooled control/TAG-ALIGN",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"TAG-ALIGN\"]",
"subgraph": "cluster_pooled_ctl"
}
},
"chip.bwa": {
"bam": {
"path": "align/rep${i+1}/${basename}",
"table": "Alignment/Replicate ${i+1}/Raw BAM from bwa"
},
"flagstat_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Samtools flagstat for Raw BAM"
}
},
"chip.align": {
"bam": {
"path": "align/rep${i+1}/${basename}",
"table": "Alignment/Replicate ${i+1}/Raw BAM from aligner",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"BAM\"]",
"subgraph": "cluster_rep${i+1}"
},
"samstat_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/SAMstats log for Raw BAM",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"SAMstats\nQC\"]",
"subgraph": "cluster_rep${i+1}"
}
},
"chip.filter": {
"nodup_bam": {
"path": "align/rep${i+1}/${basename}",
"table": "Alignment/Replicate ${i+1}/Filtered BAM",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Filt/deduped\nBAM\"]",
"subgraph": "cluster_rep${i+1}"
},
"flagstat_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Samtools flagstat for filtered BAM"
},
"samstat_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/SAMstats log for filtered BAM",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"SAMstats\nQC\"]",
"subgraph": "cluster_rep${i+1}"
},
"dup_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Dup QC for filtered BAM"
},
"pbc_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/PBC QC for filtered BAM"
},
"lib_complexity_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Library complexity QC for filtered BAM",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"LibCmplx\nQC\"]",
"subgraph": "cluster_rep${i+1}"
},
"mito_dup_log": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Mito dup log for filtered BAM"
}
},
"chip.bam2ta": {
"ta": {
"path": "align/rep${i+1}/${basename}",
"table": "Alignment/Replicate ${i+1}/TAG-ALIGN",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"TAG-ALIGN\"]",
"subgraph": "cluster_rep${i+1}"
}
},
"chip.spr": {
"ta_pr1": {
"path": "align/rep${i+1}/pseudorep1/${basename}",
"table": "Alignment/Replicate ${i+1}/Pseudoreplicate 1/TAG-ALIGN"
},
"ta_pr2": {
"path": "align/rep${i+1}/pseudorep2/${basename}",
"table": "Alignment/Replicate ${i+1}/Pseudoreplicate 2/TAG-ALIGN"
}
},
"chip.pool_ta": {
"ta_pooled": {
"path": "align/pooled-rep/${basename}",
"table": "Alignment/Pooled replicate/TAG-ALIGN",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"TAG-ALIGN\"]",
"subgraph": "cluster_pooled_rep"
}
},
"chip.pool_ta_pr1": {
"ta_pooled": {
"path": "align/pooled-rep/pseudorep1/${basename}",
"table": "Alignment/Pooled replicate/Pseudoreplicate 1/TAG-ALIGN"
}
},
"chip.pool_ta_pr2": {
"ta_pooled": {
"path": "align/pooled-rep/pseudorep2/${basename}",
"table": "Alignment/Pooled replicate/Pseudoreplicate 2/TAG-ALIGN"
}
},
"chip.xcor": {
"plot_png": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Cross-correlation Plot",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"XCOR\nPlot\"]",
"subgraph": "cluster_rep${i+1}"
},
"score": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Cross-correlation score"
},
"fraglen": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Estimated fragment length"
}
},
"chip.macs2": {
"npeak": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Raw MACS2 narrowpeak"
},
"bfilt_npeak": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered MACS2 narrowpeak"
},
"bfilt_npeak_bb": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered MACS2 narrowpeak (BigBed)"
},
"bfilt_npeak_hammock": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered MACS2 narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Fraction of MACS2 peaks in reads"
}
},
"chip.macs2_pr1": {
"npeak": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Raw MACS2 narrowpeak"
},
"bfilt_npeak": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered MACS2 narrowpeak"
},
"bfilt_npeak_bb": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered MACS2 narrowpeak (BigBed)"
},
"bfilt_npeak_hammock": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered MACS2 narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/pseudorep1/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudoreplicate 1/Fraction of MACS2 peaks in reads"
}
},
"chip.macs2_pr2": {
"npeak": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Raw MACS2 narrowpeak"
},
"bfilt_npeak": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered MACS2 narrowpeak"
},
"bfilt_npeak_bb": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered MACS2 narrowpeak (BigBed)"
},
"bfilt_npeak_hammock": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered MACS2 narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/pseudorep2/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudoreplicate 2/Fraction of MACS2 peaks in reads"
}
},
"chip.macs2_pooled": {
"npeak": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Raw MACS2 narrowpeak"
},
"bfilt_npeak": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered MACS2 narrowpeak"
},
"bfilt_npeak_bb": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered MACS2 narrowpeak (BigBed)"
},
"bfilt_npeak_hammock": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered MACS2 narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/${basename}",
"table": "QC and logs/Pooled replicate/Fraction of MACS2 peaks in reads"
}
},
"chip.macs2_ppr1": {
"npeak": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Raw MACS2 narrowpeak"
},
"bfilt_npeak": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered MACS2 narrowpeak"
},
"bfilt_npeak_bb": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered MACS2 narrowpeak (BigBed)"
},
"bfilt_npeak_hammock": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered MACS2 narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/pseudorep1/${basename}",
"table": "QC and logs/Pooled replicate/Pseudoreplicate 1/Fraction of MACS2 peaks in reads"
}
},
"chip.macs2_ppr2": {
"npeak": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Raw MACS2 narrowpeak"
},
"bfilt_npeak": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered MACS2 narrowpeak"
},
"bfilt_npeak_bb": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered MACS2 narrowpeak (BigBed)"
},
"bfilt_npeak_hammock": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered MACS2 narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/pseudorep2/${basename}",
"table": "QC and logs/Pooled replicate/Pseudoreplicate 2/Fraction of MACS2 peaks in reads"
}
},
"chip.spp": {
"rpeak": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Raw SPP narrowpeak"
},
"bfilt_rpeak": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered SPP narrowpeak"
},
"bfilt_rpeak_bb": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered SPP narrowpeak (BigBed)"
},
"bfilt_rpeak_hammock": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered SPP narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Fraction of SPP peaks in reads"
}
},
"chip.spp_pr1": {
"rpeak": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Raw SPP narrowpeak"
},
"bfilt_rpeak": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered SPP narrowpeak"
},
"bfilt_rpeak_bb": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered SPP narrowpeak (BigBed)"
},
"bfilt_rpeak_hammock": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered SPP narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/pseudorep1/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudoreplicate 1/Fraction of SPP peaks in reads"
}
},
"chip.spp_pr2": {
"rpeak": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Raw SPP narrowpeak"
},
"bfilt_rpeak": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered SPP narrowpeak"
},
"bfilt_rpeak_bb": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered SPP narrowpeak (BigBed)"
},
"bfilt_rpeak_hammock": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered SPP narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/pseudorep2/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudoreplicate 2/Fraction of SPP peaks in reads"
}
},
"chip.spp_pooled": {
"rpeak": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Raw SPP narrowpeak"
},
"bfilt_rpeak": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered SPP narrowpeak"
},
"bfilt_rpeak_bb": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered SPP narrowpeak (BigBed)"
},
"bfilt_rpeak_hammock": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered SPP narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/${basename}",
"table": "QC and logs/Pooled replicate/Fraction of SPP peaks in reads"
}
},
"chip.spp_ppr1": {
"rpeak": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Raw SPP narrowpeak"
},
"bfilt_rpeak": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered SPP narrowpeak"
},
"bfilt_rpeak_bb": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered SPP narrowpeak (BigBed)"
},
"bfilt_rpeak_hammock": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered SPP narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/pseudorep1/${basename}",
"table": "QC and logs/Pooled replicate/Pseudoreplicate 1/Fraction of SPP peaks in reads"
}
},
"chip.spp_ppr2": {
"rpeak": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Raw SPP narrowpeak"
},
"bfilt_rpeak": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered SPP narrowpeak"
},
"bfilt_rpeak_bb": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered SPP narrowpeak (BigBed)"
},
"bfilt_rpeak_hammock": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered SPP narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/pseudorep2/${basename}",
"table": "QC and logs/Pooled replicate/Pseudoreplicate 2/Fraction of SPP peaks in reads"
}
},
"chip.call_peak": {
"peak": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Raw narrowpeak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Peak\"]",
"subgraph": "cluster_rep${i+1}"
},
"bfilt_peak": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered narrowpeak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Peak\n(bfilt)\"]",
"subgraph": "cluster_rep${i+1}"
},
"bfilt_peak_bb": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered narrowpeak (BigBed)"
},
"bfilt_peak_hammock": {
"path": "peak/rep${i+1}/${basename}",
"table": "Peak/Replicate ${i+1}/Blacklist-filtered narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/${basename}",
"table": "QC and logs/Replicate ${i+1}/Fraction of peaks in reads"
}
},
"chip.call_peak_pr1": {
"peak": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Raw narrowpeak"
},
"bfilt_peak": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered narrowpeak"
},
"bfilt_peak_bb": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered narrowpeak (BigBed)"
},
"bfilt_peak_hammock": {
"path": "peak/rep${i+1}/pseudorep1/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 1/Blacklist-filtered narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/pseudorep1/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudoreplicate 1/Fraction of peaks in reads"
}
},
"chip.call_peak_pr2": {
"peak": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Raw narrowpeak"
},
"bfilt_peak": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered narrowpeak"
},
"bfilt_peak_bb": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered narrowpeak (BigBed)"
},
"bfilt_peak_hammock": {
"path": "peak/rep${i+1}/pseudorep2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudoreplicate 2/Blacklist-filtered narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}/pseudorep2/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudoreplicate 2/Fraction of peaks in reads"
}
},
"chip.call_peak_pooled": {
"peak": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Raw narrowpeak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Peak\"]",
"subgraph": "cluster_pooled_rep"
},
"bfilt_peak": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered narrowpeak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Peak\n(bfilt)\"]",
"subgraph": "cluster_pooled_rep"
},
"bfilt_peak_bb": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered narrowpeak (BigBed)"
},
"bfilt_peak_hammock": {
"path": "peak/pooled-rep/${basename}",
"table": "Peak/Pooled replicate/Blacklist-filtered narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/${basename}",
"table": "QC and logs/Pooled replicate/Fraction of peaks in reads"
}
},
"chip.call_peak_ppr1": {
"peak": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Raw narrowpeak"
},
"bfilt_peak": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered narrowpeak"
},
"bfilt_peak_bb": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered narrowpeak (BigBed)"
},
"bfilt_peak_hammock": {
"path": "peak/pooled-rep/pseudorep1/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 1/Blacklist-filtered narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/pseudorep1/${basename}",
"table": "QC and logs/Pooled replicate/Pseudoreplicate 1/Fraction of peaks in reads"
}
},
"chip.call_peak_ppr2": {
"peak": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Raw narrowpeak"
},
"bfilt_peak": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered narrowpeak"
},
"bfilt_peak_bb": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered narrowpeak (BigBed)"
},
"bfilt_peak_hammock": {
"path": "peak/pooled-rep/pseudorep2/${basename}",
"table": "Peak/Pooled replicate/Pseudoreplicate 2/Blacklist-filtered narrowpeak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-rep/pseudorep2/${basename}",
"table": "QC and logs/Pooled replicate/Pseudoreplicate 2/Fraction of peaks in reads"
}
},
"chip.macs2_signal_track": {
"pval_bw": {
"path": "signal/rep${i+1}/${basename}",
"table": "Signal/Replicate ${i+1}/MACS2 signal track (p-val)",
"ucsc_track": "track type=bigWig name=\"MACS2 p-val (rep${i+1})\" priority=${i+1} smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"BW\np-val\"]",
"subgraph": "cluster_rep${i+1}"
},
"fc_bw": {
"path": "signal/rep${i+1}/${basename}",
"table": "Signal/Replicate ${i+1}/MACS2 signal track (fold-enrichment)",
"ucsc_track": "track type=bigWig name=\"MACS2 fc (rep${i+1})\" priority=${i+1} smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"BW\nFC\"]",
"subgraph": "cluster_rep${i+1}"
}
},
"chip.macs2_signal_track_pooled": {
"pval_bw": {
"path": "signal/pooled-rep/${basename}",
"table": "Signal/Pooled replicate/MACS2 signal track (p-val)",
"ucsc_track": "track type=bigWig name=\"MACS2 p-val (pooled)\" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"BW\np-val\"]",
"subgraph": "cluster_pooled_rep"
},
"fc_bw": {
"path": "signal/pooled-rep/${basename}",
"table": "Signal/Pooled replicate/MACS2 signal track (fold-enrichment)",
"ucsc_track": "track type=bigWig name=\"MACS2 fc (pooled)\" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"BW\nFC\"]",
"subgraph": "cluster_pooled_rep"
}
},
"chip.count_signal_track": {
"pos_bw": {
"path": "signal/rep${i+1}/${basename}",
"table": "Signal/Replicate ${i+1}/Count signal track (positive)",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Count +\nSignal\"]",
"subgraph": "cluster_rep${i+1}"
},
"neg_bw": {
"path": "signal/rep${i+1}/${basename}",
"table": "Signal/Replicate ${i+1}/Count signal track (negative)",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Count -\nSignal\"]",
"subgraph": "cluster_pooled_rep"
}
},
"chip.count_signal_track_pooled": {
"pos_bw": {
"path": "signal/pooled-rep/${basename}",
"table": "Signal/Pooled replicate/Count signal track (positive)",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Count +\nSignal\"]",
"subgraph": "cluster_rep${i+1}"
},
"neg_bw": {
"path": "signal/pooled-rep/${basename}",
"table": "Signal/Pooled replicate/Count signal track (negative)",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Count -\nSignal\"]",
"subgraph": "cluster_pooled_rep"
}
},
"chip.idr": {
"bfilt_idr_peak": {
"path": "peak/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "Peak/${basename.split('.')[0].replace('_vs_','_').replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Blacklist-filtered IDR peak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"IDR NPeak\n${basename.split('.')[0]}\"]"
},
"bfilt_idr_peak_bb": {
"path": "peak/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "Peak/${basename.split('.')[0].replace('_vs_','_').replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Blacklist-filtered IDR peak (BigBed)"
},
"bfilt_idr_peak_hammock": {
"path": "peak/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "Peak/${basename.split('.')[0].replace('_vs_','_').replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Blacklist-filtered IDR peak (hammock)"
},
"idr_unthresholded_peak": {
"path": "peak/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "Peak/${basename.split('.')[0].replace('_vs_','_').replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Unthresholded raw IDR peak"
},
"idr_plot": {
"path": "qc/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "QC and logs/${basename.split('.')[0].replace('_',' vs. ').replace('-',' vs. ').capitalize()}/IDR plot",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"IDR Plot\n${basename.split('.')[0]}\"]"
},
"idr_log": {
"path": "qc/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "QC and logs/${basename.split('.')[0].replace('_',' vs. ').replace('-',' vs. ').capitalize()}/IDR log"
},
"frip_qc": {
"path": "qc/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "QC and logs/${basename.split('.')[0].replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Fraction of IDR peaks in reads"
}
},
"chip.idr_ppr": {
"bfilt_idr_peak": {
"path": "peak/pooled-pseudorep1_vs_2/${basename}",
"table": "Peak/Pooled pseudoreplicate 1 vs. 2/Blacklist-filtered IDR peak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"IDR Peak\nppr\"]"
},
"bfilt_idr_peak_bb": {
"path": "peak/pooled-pseudorep1_vs_2/${basename}",
"table": "Peak/Pooled pseudoreplicate 1 vs. 2/Blacklist-filtered IDR peak (BigBed)"
},
"bfilt_idr_peak_hammock": {
"path": "peak/pooled-pseudorep1_vs_2/${basename}",
"table": "Peak/Pooled pseudoreplicate 1 vs. 2/Blacklist-filtered IDR peak (hammock)"
},
"idr_unthresholded_peak": {
"path": "peak/pooled-pseudorep1_vs_2/${basename}",
"table": "Peak/Pooled pseudoreplicate 1 vs. 2/Unthresholded raw IDR peak"
},
"idr_plot": {
"path": "qc/pooled-pseudorep1_vs_2/${basename}",
"table": "QC and logs/Pooled pseudoreplicate 1 vs. 2/IDR plot",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"IDR Plot\nppr\"]"
},
"idr_log": {
"path": "qc/pooled-pseudorep1_vs_2/${basename}",
"table": "QC and logs/Pooled pseudoreplicate 1 vs. 2/IDR log"
},
"frip_qc": {
"path": "qc/pooled-pseudorep1_vs_2/${basename}",
"table": "QC and logs/Pooled pseudoreplicate 1 vs. 2/Fraction of IDR peaks in reads"
}
},
"chip.idr_pr": {
"bfilt_idr_peak": {
"path": "peak/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered IDR peak"
},
"bfilt_idr_peak_bb": {
"path": "peak/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered IDR peak (BigBed)"
},
"bfilt_idr_peak_hammock": {
"path": "peak/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered IDR peak (hammock)"
},
"idr_unthresholded_peak": {
"path": "peak/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Unthresholded raw IDR peak"
},
"idr_plot": {
"path": "qc/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/IDR plot"
},
"idr_log": {
"path": "qc/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/IDR log"
},
"frip_qc": {
"path": "qc/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Fraction of IDR peaks in reads"
}
},
"chip.overlap": {
"bfilt_overlap_peak": {
"path": "peak/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "Peak/${basename.split('.')[0].replace('_vs_','_').replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Blacklist-filtered overlap peak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Overlap Peak\n${basename.split('.')[0]}\"]"
},
"bfilt_overlap_peak_bb": {
"path": "peak/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "Peak/${basename.split('.')[0].replace('_vs_','_').replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Blacklist-filtered overlap peak (BigBed)"
},
"bfilt_overlap_peak_hammock": {
"path": "peak/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "Peak/${basename.split('.')[0].replace('_vs_','_').replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Blacklist-filtered overlap peak (hammock)"
},
"frip_qc": {
"path": "qc/${basename.split('.')[0].replace('_vs_','_').replace('_','_vs_').replace('-','_vs_')}/${basename}",
"table": "QC and logs/${basename.split('.')[0].replace('_',' vs. ').replace('-',' vs. ').capitalize()}/Fraction of overlap peaks in reads"
}
},
"chip.overlap_ppr": {
"bfilt_overlap_peak": {
"path": "peak/pooled-pseudorep1_vs_2/${basename}",
"table": "Peak/Pooled pseudoreplicate 1 vs. 2/Blacklist-filtered overlap peak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Overlap Peak\nppr\"]"
},
"bfilt_overlap_peak_bb": {
"path": "peak/pooled-pseudorep1_vs_2/${basename}",
"table": "Peak/Pooled pseudoreplicate 1 vs. 2/Blacklist-filtered overlap peak (BigBed)"
},
"bfilt_overlap_peak_hammock": {
"path": "peak/pooled-pseudorep1_vs_2/${basename}",
"table": "Peak/Pooled pseudoreplicate 1 vs. 2/Blacklist-filtered overlap peak (hammock)"
},
"frip_qc": {
"path": "qc/pooled-pseudorep1_vs_2/${basename}",
"table": "QC and logs/Pooled pseudoreplicate 1 vs. 2/Fraction of overlap peaks in reads"
}
},
"chip.overlap_pr": {
"bfilt_overlap_peak": {
"path": "peak/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered overlap peak"
},
"bfilt_overlap_peak_bb": {
"path": "peak/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered overlap peak (BigBed)"
},
"bfilt_overlap_peak_hammock": {
"path": "peak/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "Peak/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Blacklist-filtered overlap peak (hammock)"
},
"frip_qc": {
"path": "qc/rep${i+1}-pseudorep1_vs_2/${basename}",
"table": "QC and logs/Replicate ${i+1}/Pseudorep 1 vs. pseudorep 2/Fraction of overlap peaks in reads"
}
},
"chip.reproducibility_idr": {
"optimal_peak": {
"path": "peak/idr_reproducibility/${basename}",
"table": "Peak/IDR reproducibility/Optimal peak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"IDR Peak\noptimal\"]"
},
"optimal_peak_bb": {
"path": "peak/idr_reproducibility/${basename}",
"table": "Peak/IDR reproducibility/Optimal peak (BigBed)",
"ucsc_track": "track type=bigBed name=\"Optimal IDR peak\" priority=100 color=0,0,255 visibility=full"
},
"optimal_peak_hammock": {
"path": "peak/idr_reproducibility/${basename}",
"table": "Peak/IDR reproducibility/Optimal peak (hammock)"
},
"conservative_peak": {
"path": "peak/idr_reproducibility/${basename}",
"table": "Peak/IDR reproducibility/Conservative peak"
},
"conservative_peak_bb": {
"path": "peak/idr_reproducibility/${basename}",
"table": "Peak/IDR reproducibility/Conservative peak (BigBed)",
"ucsc_track": "track type=bigBed name=\"Conservative IDR peak\" priority=100 color=0,0,255 visibility=full"
},
"conservative_peak_hammock": {
"path": "peak/idr_reproducibility/${basename}",
"table": "Peak/IDR reproducibility/Conservative peak (hammock)"
},
"reproducibility_qc": {
"path": "qc/${basename}",
"table": "QC and logs/Reproducibility QC for overlap peaks",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"IDR\nreproducibility\"]"
}
},
"chip.reproducibility_overlap": {
"optimal_peak": {
"path": "peak/overlap_reproducibility/${basename}",
"table": "Peak/Overlap reproducibility/Optimal peak",
"node": "[shape=box style=\"filled, rounded\" fillcolor=lightyellow label=\"Overlap Peak\noptimal\"]"
},
"optimal_peak_bb": {
"path": "peak/overlap_reproducibility/${basename}",
"table": "Peak/Overlap reproducibility/Optimal peak (BigBed)",
"ucsc_track": "track type=bigBed name=\"Optimal overlap peak\" priority=100 color=0,0,255 visibility=full"
},
"optimal_peak_hammock": {
"path": "peak/overlap_reproducibility/${basename}",
"table": "Peak/Overlap reproducibility/Optimal peak (hammock)"
},
"conservative_peak": {
"path": "peak/overlap_reproducibility/${basename}",
"table": "Peak/Overlap reproducibility/Conservative peak"
},
"conservative_peak_bb": {
"path": "peak/overlap_reproducibility/${basename}",
"table": "Peak/Overlap reproducibility/Conservative peak (BigBed)",
"ucsc_track": "track type=bigBed name=\"Conservative overlap peak\" priority=100 color=0,0,255 visibility=full"
},
"conservative_peak_hammock": {
"path": "peak/overlap_reproducibility/${basename}",
"table": "Peak/Overlap reproducibility/Conservative peak (hammock)"
},
"reproducibility_qc": {
"path": "qc/${basename}",
"table": "QC and logs/Reproducibility QC for IDR peaks",
"node": "[shape=oval style=\"filled\" fillcolor=gainsboro fontsize=6 margin=0 label=\"Overlap\nreproducibility\"]"
}
},
"chip.qc_report": {
"report": {
"path": "qc/${basename}",
"table": "QC and logs/Final HTML report"
},
"qc_json": {
"path": "qc/${basename}",
"table": "QC and logs/Final QC JSON file"
}
},
"inputs": {
"chip.fastqs_rep1_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep1"
},
"chip.fastqs_rep1_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep1"
},
"chip.fastqs_rep2_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep2"
},
"chip.fastqs_rep2_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep2"
},
"chip.fastqs_rep3_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep3"
},
"chip.fastqs_rep3_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep3"
},
"chip.fastqs_rep4_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep4"
},
"chip.fastqs_rep4_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep4"
},
"chip.fastqs_rep5_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep5"
},
"chip.fastqs_rep5_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep5"
},
"chip.fastqs_rep6_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep6"
},
"chip.fastqs_rep6_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep6"
},
"chip.fastqs_rep7_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep7"
},
"chip.fastqs_rep7_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep7"
},
"chip.fastqs_rep8_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep8"
},
"chip.fastqs_rep8_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep8"
},
"chip.fastqs_rep9_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep9"
},
"chip.fastqs_rep9_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep9"
},
"chip.fastqs_rep10_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_rep10"
},
"chip.fastqs_rep10_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_rep10"
},
"chip.ctl_fastqs_rep1_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_ctl1"
},
"chip.ctl_fastqs_rep1_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_ctl1"
},
"chip.ctl_fastqs_rep2_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_ctl2"
},
"chip.ctl_fastqs_rep2_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_ctl2"
},
"chip.ctl_fastqs_rep3_R1": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR1 (${i+1})\"]",
"subgraph": "cluster_ctl3"
},
"chip.ctl_fastqs_rep3_R2": {
"node": "[shape=box style=\"filled, rounded\" fillcolor=pink label=\"FASTQ\nR2 (${i+1})\"]",
"subgraph": "cluster_ctl3"