From 4f7138d35878aafa0fa65ce3cb2340b49513f200 Mon Sep 17 00:00:00 2001 From: nefrathenrici Date: Wed, 3 Jul 2024 16:07:17 -0700 Subject: [PATCH] comments fix escape chars --- .buildkite/pipeline.yml | 2 +- .github/workflows/calibration_test.yml | 11 +- .github/workflows/ci.yml | 4 - .gitignore | 1 + .../model_interface.jl | 2 +- .../pipeline.sbatch | 4 +- calibration/model_interface.jl | 2 +- calibration/test/Manifest.toml | 2792 ----------------- calibration/test/e2e_test.jl | 2 +- 9 files changed, 17 insertions(+), 2803 deletions(-) delete mode 100644 calibration/test/Manifest.toml diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index 4054e7a3670..137ba7c6d9b 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -40,7 +40,7 @@ steps: - "julia --project=perf -e 'using Pkg; Pkg.status()'" - echo "--- Instantiate calibration/test" - - "julia --project=calibration/test -e 'using Pkg; Pkg.instantiate(;verbose=true)'" + - "julia --project=calibration/test -e 'using Pkg; Pkg.develop(;path=\".\"); Pkg.instantiate(;verbose=true)'" - "julia --project=calibration/test -e 'using Pkg; Pkg.precompile()'" - "julia --project=calibration/test -e 'using Pkg; Pkg.status()'" diff --git a/.github/workflows/calibration_test.yml b/.github/workflows/calibration_test.yml index a71f58a730c..2afece5204e 100644 --- a/.github/workflows/calibration_test.yml +++ b/.github/workflows/calibration_test.yml @@ -5,6 +5,15 @@ on: pull_request: merge_group: +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +# Needed to allow julia-actions/cache to delete old caches that it has created +permissions: + actions: write + contents: read + jobs: test: name: ClimaCalibrate E2E Test @@ -18,5 +27,5 @@ jobs: with: version: '1.10' - run: | - julia --project=calibration/test -e 'using Pkg; Pkg.instantiate(;verbose=true)' + julia --project=calibration/test -e 'using Pkg; Pkg.develop(;path="."); Pkg.instantiate(;verbose=true)' julia --project=calibration/test calibration/test/e2e_test.jl diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 9517dca9170..b64588fdf96 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -38,10 +38,6 @@ jobs: version: ${{ matrix.version }} arch: ${{ matrix.arch }} - uses: julia-actions/julia-buildpkg@v1 - - name: Calibration E2E Test - run: | - julia --project=calibration/test -e 'using Pkg; Pkg.instantiate(;verbose=true)' - julia --project=calibration/test calibration/test/e2e_test.jl - uses: julia-actions/julia-runtest@v1 - uses: julia-actions/julia-processcoverage@v1 - uses: codecov/codecov-action@v4 diff --git a/.gitignore b/.gitignore index a8505b54376..e7370e59a52 100644 --- a/.gitignore +++ b/.gitignore @@ -28,6 +28,7 @@ docs/site/ # environment. /Manifest.toml test/Manifest.toml +calibration/test/Manifest.toml # ignore vscode artifacts *.vscode diff --git a/calibration/experiments/sphere_held_suarez_rhoe_equilmoist/model_interface.jl b/calibration/experiments/sphere_held_suarez_rhoe_equilmoist/model_interface.jl index ad52f3ae30f..512e796e57b 100644 --- a/calibration/experiments/sphere_held_suarez_rhoe_equilmoist/model_interface.jl +++ b/calibration/experiments/sphere_held_suarez_rhoe_equilmoist/model_interface.jl @@ -46,7 +46,7 @@ function run_forward_model(atmos_config::CA.AtmosConfig) simulation = CA.get_simulation(atmos_config) sol_res = CA.solve_atmos!(simulation) if sol_res.ret_code == :simulation_crashed - !isnothing(sol_res.sol) && sol_res.sol .= eltype(sol_res.sol)(NaN) + !isnothing(sol_res.sol) && sol_res.sol .= NaN error( "The ClimaAtmos simulation has crashed. See the stack trace for details.", ) diff --git a/calibration/experiments/sphere_held_suarez_rhoe_equilmoist/pipeline.sbatch b/calibration/experiments/sphere_held_suarez_rhoe_equilmoist/pipeline.sbatch index d254b0763df..be16d568830 100644 --- a/calibration/experiments/sphere_held_suarez_rhoe_equilmoist/pipeline.sbatch +++ b/calibration/experiments/sphere_held_suarez_rhoe_equilmoist/pipeline.sbatch @@ -22,8 +22,8 @@ prior = get_prior(joinpath(experiment_dir, "prior.toml")) output_dir = joinpath("output", "sphere_held_suarez_rhoe_equilmoist") experiment_config = ExperimentConfig(; n_iterations, ensemble_size, - observations, noise, output_dir, prior) -slurm_kwargs = kwargs(time = 50, ntasks = 16) + observations, noise, output_dir, prior) +slurm_kwargs = kwargs(time = 50, ntasks = 16, mem = "20G") eki = calibrate(CaltechHPCBackend, experiment_config; model_interface, slurm_kwargs, verbose=true) include(joinpath(experiment_dir, "postprocessing.jl")) diff --git a/calibration/model_interface.jl b/calibration/model_interface.jl index 6acf50fb3d8..e943dc042f0 100644 --- a/calibration/model_interface.jl +++ b/calibration/model_interface.jl @@ -61,7 +61,7 @@ function run_forward_model(atmos_config::CA.AtmosConfig) simulation = CA.get_simulation(atmos_config) sol_res = CA.solve_atmos!(simulation) if sol_res.ret_code == :simulation_crashed - !isnothing(sol_res.sol) && sol_res.sol .= eltype(sol_res.sol)(NaN) + !isnothing(sol_res.sol) && sol_res.sol .= NaN error( "The ClimaAtmos simulation has crashed. See the stack trace for details.", ) diff --git a/calibration/test/Manifest.toml b/calibration/test/Manifest.toml deleted file mode 100644 index e1995559853..00000000000 --- a/calibration/test/Manifest.toml +++ /dev/null @@ -1,2792 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.10.4" -manifest_format = "2.0" -project_hash = "89884ed7a225cc54d4e13a752a3036d05d402c43" - -[[deps.ADTypes]] -git-tree-sha1 = "3a6511b6e54550bcbc986c560921a8cd7761fcd8" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.5.1" -weakdeps = ["ChainRulesCore", "EnzymeCore"] - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesEnzymeCoreExt = "EnzymeCore" - -[[deps.AMD]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f" -uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e" -version = "0.5.3" - -[[deps.AbstractFFTs]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" -uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] - 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-[[deps.libzip_jll]] -deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "3282b7d16ae7ac3e57ec2f3fa8fafb564d8f9f7f" -uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1" -version = "1.10.1+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" - -[[deps.oneTBB_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" -uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+2" - -[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" diff --git a/calibration/test/e2e_test.jl b/calibration/test/e2e_test.jl index ae5aed23c77..603cecf0ec4 100644 --- a/calibration/test/e2e_test.jl +++ b/calibration/test/e2e_test.jl @@ -92,7 +92,7 @@ end if !(@isdefined backend) backend = CAL.get_backend() end -@info "Running Calibration E2E test on $backend" +@info "Running calibration E2E test" backend if backend <: CAL.SlurmBackend slurm_kwargs = CAL.kwargs(time = 10) test_eki = CAL.calibrate(