From 3862154894009aa1cf10c03a9beaddfff5fe75cb Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Mon, 9 Oct 2023 11:39:13 +0200 Subject: [PATCH 01/14] fix: warning for successive runs after patch - happens only if the fixed compose was downloaded for installation --- cli/helper-tasks.go | 26 +++++++++++++++----------- 1 file changed, 15 insertions(+), 11 deletions(-) diff --git a/cli/helper-tasks.go b/cli/helper-tasks.go index c333bb5..db6d0e4 100644 --- a/cli/helper-tasks.go +++ b/cli/helper-tasks.go @@ -11,33 +11,39 @@ import ( ) func applyPatch(patchName string) (success bool) { - zboth.Debug().Msgf("Applying patch: %s", patchName) - if !conf.IsSet((joinKey(stateWord, patchWord))) { - var applied []string + var applied []string + if conf.IsSet((joinKey(stateWord, patchWord))) { + applied = conf.GetStringSlice((joinKey(stateWord, patchWord))) + zboth.Debug().Msgf("The following patches have been applied: %s.", strings.Join(applied, ", ")) + } else { conf.Set(joinKey(stateWord, patchWord), applied) + zboth.Debug().Msg("No patch has been applied so far.") } - applied := conf.GetStringSlice((joinKey(stateWord, patchWord))) - zboth.Debug().Msgf("The following patches have been applied: %s.", strings.Join(applied, ", ")) - if elementInSlice(patchName, &applied) == -1 { + if elementInSlice(patchName, &applied) != -1 { + success = true + } else { switch patchName { case "fix-173-ketcher": + zboth.Debug().Msgf("Applying patch: %s", patchName) // patch for ELN version 1.7.3 docker-compose.yml file + success = true for _, givenName := range allInstances() { gotoFolder(givenName) var result []byte var err error compose := parseCompose(chemotionComposeFilename) if compose.IsSet("services.ketchersvc.image") { - image := compose.GetString("services.ketchersvc.image") - if image == "ptrxyz/chemotion:ketchersvc-1.7.3" { + eln_image := compose.GetString("services.eln.image") + ketcher_image := compose.GetString("services.ketchersvc.image") + if eln_image == "ptrxyz/chemotion:eln-1.7.3" && ketcher_image == "ptrxyz/chemotion:ketchersvc-1.7.3" { if result, err = execShell(toSprintf("cat %s | %s run -i --rm mikefarah/yq '.services.ketchersvc.image = \"ptrxyz/chemotion:ketchersvc-1.7.2\"'", chemotionComposeFilename, virtualizer)); err == nil { yamlFile := pathlib.NewPath(chemotionComposeFilename) err = yamlFile.WriteFile(result) } if err == nil { zboth.Info().Msgf(color.Color(toSprintf("[red][bold]Instance %s has been patched. Please restart it ASAP.", givenName))) - success = true } else { + success = false zboth.Warn().Err(err).Msgf("Failed to update %s for %s. Patch not completely successful.", chemotionComposeFilename, givenName) } } @@ -55,8 +61,6 @@ func applyPatch(patchName string) (success bool) { } } } - } else { - success = true } return } From 079aeb00b5ff436285d335c704a3b67f7c113b65 Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 18 Oct 2023 08:34:40 +0200 Subject: [PATCH 02/14] update go.mod --- go.mod | 14 +++++++++----- go.sum | 33 ++++++++++++++++++++++----------- 2 files changed, 31 insertions(+), 16 deletions(-) diff --git a/go.mod b/go.mod index bbb08d7..73963c5 100644 --- a/go.mod +++ b/go.mod @@ -11,7 +11,7 @@ require ( github.com/rs/zerolog v1.31.0 github.com/shirou/gopsutil v3.21.11+incompatible github.com/spf13/cobra v1.7.0 - github.com/spf13/viper v1.16.0 + github.com/spf13/viper v1.17.0 ) require ( @@ -24,22 +24,26 @@ require ( github.com/inconshreveable/mousetrap v1.1.0 // indirect github.com/magiconair/properties v1.8.7 // indirect github.com/mattn/go-colorable v0.1.13 // indirect - github.com/mattn/go-isatty v0.0.19 // indirect + github.com/mattn/go-isatty v0.0.20 // indirect github.com/mattn/go-runewidth v0.0.15 // indirect github.com/mitchellh/colorstring v0.0.0-20190213212951-d06e56a500db github.com/mitchellh/mapstructure v1.5.0 // indirect github.com/pelletier/go-toml/v2 v2.1.0 // indirect github.com/rivo/uniseg v0.4.4 // indirect github.com/rogpeppe/go-internal v1.11.0 // indirect + github.com/sagikazarmark/locafero v0.3.0 // indirect + github.com/sagikazarmark/slog-shim v0.1.0 // indirect github.com/schollz/progressbar/v3 v3.13.1 + github.com/sourcegraph/conc v0.3.0 // indirect github.com/spf13/afero v1.10.0 // indirect github.com/spf13/cast v1.5.1 // indirect - github.com/spf13/jwalterweatherman v1.1.0 // indirect github.com/spf13/pflag v1.0.5 // indirect github.com/subosito/gotenv v1.6.0 // indirect github.com/yusufpapurcu/wmi v1.2.3 // indirect - golang.org/x/sys v0.12.0 // indirect - golang.org/x/term v0.12.0 // indirect + go.uber.org/multierr v1.11.0 // indirect + golang.org/x/exp v0.0.0-20231006140011-7918f672742d // indirect + golang.org/x/sys v0.13.0 // indirect + golang.org/x/term v0.13.0 // indirect golang.org/x/text v0.13.0 // indirect gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c // indirect gopkg.in/ini.v1 v1.67.0 // indirect diff --git a/go.sum b/go.sum index 9723149..4991cb1 100644 --- a/go.sum +++ b/go.sum @@ -59,8 +59,9 @@ github.com/cncf/udpa/go v0.0.0-20201120205902-5459f2c99403/go.mod h1:WmhPx2Nbnht github.com/coreos/go-systemd/v22 v22.5.0/go.mod h1:Y58oyj3AT4RCenI/lSvhwexgC+NSVTIJ3seZv2GcEnc= github.com/cpuguy83/go-md2man/v2 v2.0.2/go.mod h1:tgQtvFlXSQOSOSIRvRPT7W67SCa46tRHOmNcaadrF8o= github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38= -github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c= github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38= +github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc h1:U9qPSI2PIWSS1VwoXQT9A3Wy9MM3WgvqSxFWenqJduM= +github.com/davecgh/go-spew v1.1.2-0.20180830191138-d8f796af33cc/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38= github.com/envoyproxy/go-control-plane v0.9.0/go.mod h1:YTl/9mNaCwkRvm6d1a2C3ymFceY/DCBVvsKhRF0iEA4= github.com/envoyproxy/go-control-plane v0.9.1-0.20191026205805-5f8ba28d4473/go.mod h1:YTl/9mNaCwkRvm6d1a2C3ymFceY/DCBVvsKhRF0iEA4= github.com/envoyproxy/go-control-plane v0.9.4/go.mod h1:6rpuAdCZL397s3pYoYcLgu1mIlRU8Am5FuJP05cCM98= @@ -171,8 +172,9 @@ github.com/mattn/go-colorable v0.1.13 h1:fFA4WZxdEF4tXPZVKMLwD8oUnCTTo08duU7wxec github.com/mattn/go-colorable v0.1.13/go.mod h1:7S9/ev0klgBDR4GtXTXX8a3vIGJpMovkB8vQcUbaXHg= github.com/mattn/go-isatty v0.0.16/go.mod h1:kYGgaQfpe5nmfYZH+SKPsOc2e4SrIfOl2e/yFXSvRLM= github.com/mattn/go-isatty v0.0.17/go.mod h1:kYGgaQfpe5nmfYZH+SKPsOc2e4SrIfOl2e/yFXSvRLM= -github.com/mattn/go-isatty v0.0.19 h1:JITubQf0MOLdlGRuRq+jtsDlekdYPia9ZFsB8h/APPA= github.com/mattn/go-isatty v0.0.19/go.mod h1:W+V8PltTTMOvKvAeJH7IuucS94S2C6jfK/D7dTCTo3Y= +github.com/mattn/go-isatty v0.0.20 h1:xfD0iDuEKnDkl03q4limB+vH+GxLEtL/jb4xVJSWWEY= +github.com/mattn/go-isatty v0.0.20/go.mod h1:W+V8PltTTMOvKvAeJH7IuucS94S2C6jfK/D7dTCTo3Y= github.com/mattn/go-runewidth v0.0.14/go.mod h1:Jdepj2loyihRzMpdS35Xk/zdY8IAYHsh153qUoGf23w= github.com/mattn/go-runewidth v0.0.15 h1:UNAjwbU9l54TA3KzvqLGxwWjHmMgBUVhBiTjelZgg3U= github.com/mattn/go-runewidth v0.0.15/go.mod h1:Jdepj2loyihRzMpdS35Xk/zdY8IAYHsh153qUoGf23w= @@ -184,8 +186,9 @@ github.com/pelletier/go-toml/v2 v2.1.0 h1:FnwAJ4oYMvbT/34k9zzHuZNrhlz48GB3/s6at6 github.com/pelletier/go-toml/v2 v2.1.0/go.mod h1:tJU2Z3ZkXwnxa4DPO899bsyIoywizdUvyaeZurnPPDc= github.com/pkg/errors v0.9.1/go.mod h1:bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0= github.com/pkg/sftp v1.13.1/go.mod h1:3HaPG6Dq1ILlpPZRO0HVMrsydcdLt6HRDccSgb87qRg= -github.com/pmezard/go-difflib v1.0.0 h1:4DBwDE0NGyQoBHbLQYPwSUPoCMWR5BEzIk/f1lZbAQM= github.com/pmezard/go-difflib v1.0.0/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4= +github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2 h1:Jamvg5psRIccs7FGNTlIRMkT8wgtp5eCXdBlqhYGL6U= +github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4= github.com/prometheus/client_model v0.0.0-20190812154241-14fe0d1b01d4/go.mod h1:xMI15A0UPsDsEKsMN9yxemIoYk6Tm2C1GtYGdfGttqA= github.com/rivo/uniseg v0.2.0/go.mod h1:J6wj4VEh+S6ZtnVlnTBMWIodfgj8LQOQFoIToxlJtxc= github.com/rivo/uniseg v0.4.4 h1:8TfxU8dW6PdqD27gjM8MVNuicgxIjxpm4K7x4jp8sis= @@ -197,27 +200,30 @@ github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg= github.com/rs/zerolog v1.31.0 h1:FcTR3NnLWW+NnTwwhFWiJSZr4ECLpqCm6QsEnyvbV4A= github.com/rs/zerolog v1.31.0/go.mod h1:/7mN4D5sKwJLZQ2b/znpjC3/GQWY/xaDXUM0kKWRHss= github.com/russross/blackfriday/v2 v2.1.0/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM= +github.com/sagikazarmark/locafero v0.3.0 h1:zT7VEGWC2DTflmccN/5T1etyKvxSxpHsjb9cJvm4SvQ= +github.com/sagikazarmark/locafero v0.3.0/go.mod h1:w+v7UsPNFwzF1cHuOajOOzoq4U7v/ig1mpRjqV+Bu1U= +github.com/sagikazarmark/slog-shim v0.1.0 h1:diDBnUNK9N/354PgrxMywXnAwEr1QZcOr6gto+ugjYE= +github.com/sagikazarmark/slog-shim v0.1.0/go.mod h1:SrcSrq8aKtyuqEI1uvTDTK1arOWRIczQRv+GVI1AkeQ= github.com/schollz/progressbar/v3 v3.13.1 h1:o8rySDYiQ59Mwzy2FELeHY5ZARXZTVJC7iHD6PEFUiE= github.com/schollz/progressbar/v3 v3.13.1/go.mod h1:xvrbki8kfT1fzWzBT/UZd9L6GA+jdL7HAgq2RFnO6fQ= github.com/shirou/gopsutil v3.21.11+incompatible h1:+1+c1VGhc88SSonWP6foOcLhvnKlUeu/erjjvaPEYiI= github.com/shirou/gopsutil v3.21.11+incompatible/go.mod h1:5b4v6he4MtMOwMlS0TUMTu2PcXUg8+E1lC7eC3UO/RA= +github.com/sourcegraph/conc v0.3.0 h1:OQTbbt6P72L20UqAkXXuLOj79LfEanQ+YQFNpLA9ySo= +github.com/sourcegraph/conc v0.3.0/go.mod h1:Sdozi7LEKbFPqYX2/J+iBAM6HpqSLTASQIKqDmF7Mt0= github.com/spf13/afero v1.10.0 h1:EaGW2JJh15aKOejeuJ+wpFSHnbd7GE6Wvp3TsNhb6LY= github.com/spf13/afero v1.10.0/go.mod h1:UBogFpq8E9Hx+xc5CNTTEpTnuHVmXDwZcZcE1eb/UhQ= github.com/spf13/cast v1.5.1 h1:R+kOtfhWQE6TVQzY+4D7wJLBgkdVasCEFxSUBYBYIlA= github.com/spf13/cast v1.5.1/go.mod h1:b9PdjNptOpzXr7Rq1q9gJML/2cdGQAo69NKzQ10KN48= github.com/spf13/cobra v1.7.0 h1:hyqWnYt1ZQShIddO5kBpj3vu05/++x6tJ6dg8EC572I= github.com/spf13/cobra v1.7.0/go.mod h1:uLxZILRyS/50WlhOIKD7W6V5bgeIt+4sICxh6uRMrb0= -github.com/spf13/jwalterweatherman v1.1.0 h1:ue6voC5bR5F8YxI5S67j9i582FU4Qvo2bmqnqMYADFk= -github.com/spf13/jwalterweatherman v1.1.0/go.mod h1:aNWZUN0dPAAO/Ljvb5BEdw96iTZ0EXowPYD95IqWIGo= github.com/spf13/pflag v1.0.5 h1:iy+VFUOCP1a+8yFto/drg2CJ5u0yRoB7fZw3DKv/JXA= github.com/spf13/pflag v1.0.5/go.mod h1:McXfInJRrz4CZXVZOBLb0bTZqETkiAhM9Iw0y3An2Bg= -github.com/spf13/viper v1.16.0 h1:rGGH0XDZhdUOryiDWjmIvUSWpbNqisK8Wk0Vyefw8hc= -github.com/spf13/viper v1.16.0/go.mod h1:yg78JgCJcbrQOvV9YLXgkLaZqUidkY9K+Dd1FofRzQg= +github.com/spf13/viper v1.17.0 h1:I5txKw7MJasPL/BrfkbA0Jyo/oELqVmux4pR/UxOMfI= +github.com/spf13/viper v1.17.0/go.mod h1:BmMMMLQXSbcHK6KAOiFLz0l5JHrU89OdIRHvsk0+yVI= github.com/stretchr/objx v0.1.0/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME= github.com/stretchr/objx v0.4.0/go.mod h1:YvHI0jy2hoMjB+UWwv71VJQ9isScKT/TqJzVSSt89Yw= github.com/stretchr/objx v0.5.0 h1:1zr/of2m5FGMsad5YfcqgdqdWrIhu+EBEJRhR1U7z/c= github.com/stretchr/objx v0.5.0/go.mod h1:Yh+to48EsGEfYuaHDzXPcE3xhTkx73EhmCGUpEOglKo= -github.com/stretchr/testify v1.2.2/go.mod h1:a8OnRcib4nhh0OaRAV+Yts87kKdq0PP7pXfy6kDkUVs= github.com/stretchr/testify v1.3.0/go.mod h1:M5WIy9Dh21IEIfnGCwXGc5bZfKNJtfHm1UVUgZn+9EI= github.com/stretchr/testify v1.4.0/go.mod h1:j7eGeouHqKxXV5pUuKE4zz7dFj8WfuZ+81PSLYec5m4= github.com/stretchr/testify v1.5.1/go.mod h1:5W2xD1RspED5o8YsWQXVCued0rvSQ+mT+I5cxcmMvtA= @@ -240,6 +246,8 @@ go.opencensus.io v0.22.2/go.mod h1:yxeiOL68Rb0Xd1ddK5vPZ/oVn4vY4Ynel7k9FzqtOIw= go.opencensus.io v0.22.3/go.mod h1:yxeiOL68Rb0Xd1ddK5vPZ/oVn4vY4Ynel7k9FzqtOIw= go.opencensus.io v0.22.4/go.mod h1:yxeiOL68Rb0Xd1ddK5vPZ/oVn4vY4Ynel7k9FzqtOIw= go.opencensus.io v0.22.5/go.mod h1:5pWMHQbX5EPX2/62yrJeAkowc+lfs/XD7Uxpq3pI6kk= +go.uber.org/multierr v1.11.0 h1:blXXJkSxSSfBVBlC76pxqeO+LN3aDfLQo+309xJstO0= +go.uber.org/multierr v1.11.0/go.mod h1:20+QtiLqy0Nd6FdQB9TLXag12DsQkrbs3htMFfDN80Y= golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w= golang.org/x/crypto v0.0.0-20190510104115-cbcb75029529/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI= golang.org/x/crypto v0.0.0-20190605123033-f99c8df09eb5/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI= @@ -257,6 +265,8 @@ golang.org/x/exp v0.0.0-20191227195350-da58074b4299/go.mod h1:2RIsYlXP63K8oxa1u0 golang.org/x/exp v0.0.0-20200119233911-0405dc783f0a/go.mod h1:2RIsYlXP63K8oxa1u096TMicItID8zy7Y6sNkU49FU4= golang.org/x/exp v0.0.0-20200207192155-f17229e696bd/go.mod h1:J/WKrq2StrnmMY6+EHIKF9dgMWnmCNThgcyBT1FY9mM= golang.org/x/exp v0.0.0-20200224162631-6cc2880d07d6/go.mod h1:3jZMyOhIsHpP37uCMkUooju7aAi5cS1Q23tOzKc+0MU= +golang.org/x/exp v0.0.0-20231006140011-7918f672742d h1:jtJma62tbqLibJ5sFQz8bKtEM8rJBtfilJ2qTU199MI= +golang.org/x/exp v0.0.0-20231006140011-7918f672742d/go.mod h1:ldy0pHrwJyGW56pPQzzkH36rKxoZW1tw7ZJpeKx+hdo= golang.org/x/image v0.0.0-20190227222117-0694c2d4d067/go.mod h1:kZ7UVZpmo3dzQBMxlp+ypCbDeSB+sBbTgSJuh5dn5js= golang.org/x/image v0.0.0-20190802002840-cff245a6509b/go.mod h1:FeLwcggjj3mMvU+oOTbSwawSJRM1uh48EjtB4UJZlP0= golang.org/x/lint v0.0.0-20181026193005-c67002cb31c3/go.mod h1:UVdnD1Gm6xHRNCYTkRU2/jEulfH38KcIWyp/GAMgvoE= @@ -373,12 +383,13 @@ golang.org/x/sys v0.0.0-20220811171246-fbc7d0a398ab/go.mod h1:oPkhp1MJrh7nUepCBc golang.org/x/sys v0.0.0-20220908164124-27713097b956/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.1.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= -golang.org/x/sys v0.12.0 h1:CM0HF96J0hcLAwsHPJZjfdNzs0gftsLfgKt57wWHJ0o= golang.org/x/sys v0.12.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= +golang.org/x/sys v0.13.0 h1:Af8nKPmuFypiUBjVoU9V20FiaFXOcuZI21p0ycVYYGE= +golang.org/x/sys v0.13.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo= golang.org/x/term v0.6.0/go.mod h1:m6U89DPEgQRMq3DNkDClhWw02AUbt2daBVO4cn4Hv9U= -golang.org/x/term v0.12.0 h1:/ZfYdc3zq+q02Rv9vGqTeSItdzZTSNDmfTi0mBAuidU= -golang.org/x/term v0.12.0/go.mod h1:owVbMEjm3cBLCHdkQu9b1opXd4ETQWc3BhuQGKgXgvU= +golang.org/x/term v0.13.0 h1:bb+I9cTfFazGW51MZqBVmZy7+JEJMouUHTUSKVQLBek= +golang.org/x/term v0.13.0/go.mod h1:LTmsnFJwVN6bCy1rVCoS+qHT1HhALEFxKncY3WNNh4U= golang.org/x/text v0.0.0-20170915032832-14c0d48ead0c/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ= golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ= golang.org/x/text v0.3.1-0.20180807135948-17ff2d5776d2/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ= From 0664a5667d06da7898e83a11e31e4b471235daf1 Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Fri, 27 Oct 2023 14:46:59 +0200 Subject: [PATCH 03/14] point docker compose to 1.8.0 --- payload/docker-compose.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/payload/docker-compose.yml b/payload/docker-compose.yml index 2b6e61f..4b55115 100644 --- a/payload/docker-compose.yml +++ b/payload/docker-compose.yml @@ -13,7 +13,7 @@ services: - chemotion msconvert: - image: ptrxyz/chemotion:msconvert-1.7.3 + image: ptrxyz/chemotion:msconvert-1.8.0 restart: unless-stopped hostname: msconvert volumes: @@ -22,7 +22,7 @@ services: - chemotion spectra: - image: ptrxyz/chemotion:spectra-1.7.3 + image: ptrxyz/chemotion:spectra-1.8.0 restart: unless-stopped hostname: spectra volumes: @@ -33,7 +33,7 @@ services: - chemotion worker: - image: ptrxyz/chemotion:eln-1.7.3 + image: ptrxyz/chemotion:eln-1.8.0 restart: unless-stopped environment: - CONFIG_ROLE=worker @@ -48,7 +48,7 @@ services: - chemotion eln: - image: ptrxyz/chemotion:eln-1.7.3 + image: ptrxyz/chemotion:eln-1.8.0 restart: unless-stopped environment: - CONFIG_ROLE=eln @@ -67,7 +67,7 @@ services: - chemotion ketchersvc: - image: ptrxyz/chemotion:ketchersvc-1.7.2 + image: ptrxyz/chemotion:ketchersvc-1.8.0 restart: unless-stopped environment: - CONFIG_KETCHER_URL=http://eln:4000/ketcher/ @@ -79,7 +79,7 @@ services: - chemotion converter: - image: ptrxyz/chemotion:converter-1.7.3 + image: ptrxyz/chemotion:converter-1.8.0 restart: unless-stopped environment: - SECRET_KEY=imsupersecretandwanttobechanged From d09ebbbce7dfa6c18986d2f602e20c66bc9be3f1 Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Fri, 27 Oct 2023 14:52:26 +0200 Subject: [PATCH 04/14] version 0.2.14 - update to ELN v1.8.0 --- README.md | 1 + cli/root-instance-new.go | 8 ++++---- cli/root.go | 2 +- 3 files changed, 6 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index d7c1ac1..71806be 100644 --- a/README.md +++ b/README.md @@ -24,6 +24,7 @@ ChemCLI tool supports the following versions of Chemotion ELN: | ELN Version | `docker-compose.yml` file | Supported by chemCLI version | | ---------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------ | ------------------------------------------------------------- | +| [v1.8.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.8.0) | [eln-1.8.0](https://raw.githubusercontent.com/Chemotion/ChemCLI/0664a5667d06da7898e83a11e31e4b471235daf1/payload/docker-compose.yml) | | [v1.7.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.7.3) | [eln-1.7.3](https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.6.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.6.2) | [eln-1.6.2](https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.5.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.5.4) | [eln-1.5.4](https://raw.githubusercontent.com/Chemotion/ChemCLI/548ead617a552307f30d5051e72c01d95e99b30f/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | diff --git a/cli/root-instance-new.go b/cli/root-instance-new.go index da5d731..36620d4 100644 --- a/cli/root-instance-new.go +++ b/cli/root-instance-new.go @@ -15,10 +15,10 @@ import ( // helper to determine the required compose file func getComposeAddressToUse(currentVersion, action string) (use string) { versions := make(map[string]string) - latestForThisCLIRelease := "1.7.3" - orderVersions := []string{latestForThisCLIRelease, "1.7.2", "1.6.2", "1.5.4"} // descending order - versions[latestForThisCLIRelease] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml" - versions["1.7.2"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/b07becc0f421a76aaee6f9e32ed6bf49f942258b/payload/docker-compose.yml" + latestForThisCLIRelease := "1.8.0" + orderVersions := []string{latestForThisCLIRelease, "1.7.3", "1.6.2", "1.5.4"} // descending order + versions[latestForThisCLIRelease] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/0664a5667d06da7898e83a11e31e4b471235daf1/payload/docker-compose.yml" + versions["1.7.3"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml" versions["1.6.2"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml" versions["1.5.4"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/548ead617a552307f30d5051e72c01d95e99b30f/payload/docker-compose.yml" validVersions := []string{} diff --git a/cli/root.go b/cli/root.go index 8142f89..a8d963a 100644 --- a/cli/root.go +++ b/cli/root.go @@ -68,7 +68,7 @@ const ( // configuration and logging var ( // version number, here to allow override - versionCLI = "0.2.13" + versionCLI = "0.2.14" // current shell shell string // currently selected instance From 681cab48409d6c9a6be51ac5903e04890467d998 Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 10 Jan 2024 07:17:23 +0100 Subject: [PATCH 05/14] point docker compose to 1.8.1 --- payload/docker-compose.yml | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/payload/docker-compose.yml b/payload/docker-compose.yml index 4b55115..c96507a 100644 --- a/payload/docker-compose.yml +++ b/payload/docker-compose.yml @@ -13,7 +13,7 @@ services: - chemotion msconvert: - image: ptrxyz/chemotion:msconvert-1.8.0 + image: ptrxyz/chemotion:msconvert-1.8.1 restart: unless-stopped hostname: msconvert volumes: @@ -22,7 +22,7 @@ services: - chemotion spectra: - image: ptrxyz/chemotion:spectra-1.8.0 + image: ptrxyz/chemotion:spectra-1.8.1 restart: unless-stopped hostname: spectra volumes: @@ -33,10 +33,11 @@ services: - chemotion worker: - image: ptrxyz/chemotion:eln-1.8.0 + image: ptrxyz/chemotion:eln-1.8.1 restart: unless-stopped environment: - CONFIG_ROLE=worker + - SECRET_KEY_BASE=pleasechangeme depends_on: - db - eln @@ -48,7 +49,7 @@ services: - chemotion eln: - image: ptrxyz/chemotion:eln-1.8.0 + image: ptrxyz/chemotion:eln-1.8.1 restart: unless-stopped environment: - CONFIG_ROLE=eln @@ -67,7 +68,7 @@ services: - chemotion ketchersvc: - image: ptrxyz/chemotion:ketchersvc-1.8.0 + image: ptrxyz/chemotion:ketchersvc-1.8.1 restart: unless-stopped environment: - CONFIG_KETCHER_URL=http://eln:4000/ketcher/ @@ -79,7 +80,7 @@ services: - chemotion converter: - image: ptrxyz/chemotion:converter-1.8.0 + image: ptrxyz/chemotion:converter-1.8.1 restart: unless-stopped environment: - SECRET_KEY=imsupersecretandwanttobechanged From 784feec333cbda05ec4e6f652e3287984bfdc247 Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 10 Jan 2024 07:42:49 +0100 Subject: [PATCH 06/14] version 0.2.15 - update to ELN v1.8.1 - removed version ELN v1.5 from installable options --- README.md | 3 +-- cli/root-instance-new.go | 8 ++++---- cli/root.go | 2 +- 3 files changed, 6 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 71806be..f01a04e 100644 --- a/README.md +++ b/README.md @@ -24,10 +24,9 @@ ChemCLI tool supports the following versions of Chemotion ELN: | ELN Version | `docker-compose.yml` file | Supported by chemCLI version | | ---------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------ | ------------------------------------------------------------- | -| [v1.8.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.8.0) | [eln-1.8.0](https://raw.githubusercontent.com/Chemotion/ChemCLI/0664a5667d06da7898e83a11e31e4b471235daf1/payload/docker-compose.yml) | +| [v1.8.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.8.1) | [eln-1.8.1](https://raw.githubusercontent.com/Chemotion/ChemCLI/681cab48409d6c9a6be51ac5903e04890467d998/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.7.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.7.3) | [eln-1.7.3](https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.6.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.6.2) | [eln-1.6.2](https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | -| [v1.5.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.5.4) | [eln-1.5.4](https://raw.githubusercontent.com/Chemotion/ChemCLI/548ead617a552307f30d5051e72c01d95e99b30f/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | > Chemotion ELN version [1.4.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.4.1-3) is **not supported** because it requires [manual changes](https://chemotion.net/docs/eln/install_configure/manual_install#only-when-installing-or-upgrading-to-version-141) to the installation after downloading the [`docker-compose.yml`](https://raw.githubusercontent.com/ptrxyz/chemotion/ba4b4620ab2aaa6be32df78189c29970335b1989/docker-compose.yml) file. diff --git a/cli/root-instance-new.go b/cli/root-instance-new.go index 36620d4..ce4cef4 100644 --- a/cli/root-instance-new.go +++ b/cli/root-instance-new.go @@ -15,12 +15,12 @@ import ( // helper to determine the required compose file func getComposeAddressToUse(currentVersion, action string) (use string) { versions := make(map[string]string) - latestForThisCLIRelease := "1.8.0" - orderVersions := []string{latestForThisCLIRelease, "1.7.3", "1.6.2", "1.5.4"} // descending order - versions[latestForThisCLIRelease] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/0664a5667d06da7898e83a11e31e4b471235daf1/payload/docker-compose.yml" + latestForThisCLIRelease := "1.8.1" + orderVersions := []string{latestForThisCLIRelease, "1.8.0", "1.7.3", "1.6.2"} // descending order + versions[latestForThisCLIRelease] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/681cab48409d6c9a6be51ac5903e04890467d998/payload/docker-compose.yml" + versions["1.8.0"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/0664a5667d06da7898e83a11e31e4b471235daf1/payload/docker-compose.yml" versions["1.7.3"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml" versions["1.6.2"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml" - versions["1.5.4"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/548ead617a552307f30d5051e72c01d95e99b30f/payload/docker-compose.yml" validVersions := []string{} for _, version := range orderVersions { now, _ := vercompare.NewVersion(currentVersion) diff --git a/cli/root.go b/cli/root.go index a8d963a..a1fef96 100644 --- a/cli/root.go +++ b/cli/root.go @@ -68,7 +68,7 @@ const ( // configuration and logging var ( // version number, here to allow override - versionCLI = "0.2.14" + versionCLI = "0.2.15" // current shell shell string // currently selected instance From 97c127ccee764bde6dca19b5b0f0ea7e44d6a695 Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 24 Jan 2024 08:10:39 +0100 Subject: [PATCH 07/14] update go.mod --- go.mod | 29 ++-- go.sum | 492 ++++----------------------------------------------------- 2 files changed, 47 insertions(+), 474 deletions(-) diff --git a/go.mod b/go.mod index 73963c5..8fee600 100644 --- a/go.mod +++ b/go.mod @@ -5,18 +5,18 @@ go 1.21 require ( github.com/cavaliergopher/grab/v3 v3.0.1 github.com/chigopher/pathlib v1.0.0 - github.com/google/uuid v1.3.1 + github.com/google/uuid v1.6.0 github.com/hashicorp/go-version v1.6.0 github.com/manifoldco/promptui v0.9.0 github.com/rs/zerolog v1.31.0 github.com/shirou/gopsutil v3.21.11+incompatible - github.com/spf13/cobra v1.7.0 - github.com/spf13/viper v1.17.0 + github.com/spf13/cobra v1.8.0 + github.com/spf13/viper v1.18.2 ) require ( github.com/chzyer/readline v1.5.1 // indirect - github.com/fsnotify/fsnotify v1.6.0 // indirect + github.com/fsnotify/fsnotify v1.7.0 // indirect github.com/go-ole/go-ole v1.3.0 // indirect github.com/google/go-github v17.0.0+incompatible github.com/google/go-querystring v1.1.0 // indirect @@ -25,26 +25,25 @@ require ( github.com/magiconair/properties v1.8.7 // indirect github.com/mattn/go-colorable v0.1.13 // indirect github.com/mattn/go-isatty v0.0.20 // indirect - github.com/mattn/go-runewidth v0.0.15 // indirect github.com/mitchellh/colorstring v0.0.0-20190213212951-d06e56a500db github.com/mitchellh/mapstructure v1.5.0 // indirect - github.com/pelletier/go-toml/v2 v2.1.0 // indirect + github.com/pelletier/go-toml/v2 v2.1.1 // indirect github.com/rivo/uniseg v0.4.4 // indirect - github.com/rogpeppe/go-internal v1.11.0 // indirect - github.com/sagikazarmark/locafero v0.3.0 // indirect + github.com/rogpeppe/go-internal v1.12.0 // indirect + github.com/sagikazarmark/locafero v0.4.0 // indirect github.com/sagikazarmark/slog-shim v0.1.0 // indirect - github.com/schollz/progressbar/v3 v3.13.1 + github.com/schollz/progressbar/v3 v3.14.1 github.com/sourcegraph/conc v0.3.0 // indirect - github.com/spf13/afero v1.10.0 // indirect - github.com/spf13/cast v1.5.1 // indirect + github.com/spf13/afero v1.11.0 // indirect + github.com/spf13/cast v1.6.0 // indirect github.com/spf13/pflag v1.0.5 // indirect github.com/subosito/gotenv v1.6.0 // indirect github.com/yusufpapurcu/wmi v1.2.3 // indirect go.uber.org/multierr v1.11.0 // indirect - golang.org/x/exp v0.0.0-20231006140011-7918f672742d // indirect - golang.org/x/sys v0.13.0 // indirect - golang.org/x/term v0.13.0 // indirect - golang.org/x/text v0.13.0 // indirect + golang.org/x/exp v0.0.0-20240119083558-1b970713d09a // indirect + golang.org/x/sys v0.16.0 // indirect + golang.org/x/term v0.16.0 // indirect + golang.org/x/text v0.14.0 // indirect gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c // indirect gopkg.in/ini.v1 v1.67.0 // indirect gopkg.in/yaml.v3 v3.0.1 // indirect diff --git a/go.sum b/go.sum index 4991cb1..6b55786 100644 --- a/go.sum +++ b/go.sum @@ -1,46 +1,5 @@ -cloud.google.com/go v0.26.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw= -cloud.google.com/go v0.34.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw= -cloud.google.com/go v0.38.0/go.mod h1:990N+gfupTy94rShfmMCWGDn0LpTmnzTp2qbd1dvSRU= -cloud.google.com/go v0.44.1/go.mod h1:iSa0KzasP4Uvy3f1mN/7PiObzGgflwredwwASm/v6AU= -cloud.google.com/go v0.44.2/go.mod h1:60680Gw3Yr4ikxnPRS/oxxkBccT6SA1yMk63TGekxKY= -cloud.google.com/go v0.44.3/go.mod h1:60680Gw3Yr4ikxnPRS/oxxkBccT6SA1yMk63TGekxKY= -cloud.google.com/go v0.45.1/go.mod h1:RpBamKRgapWJb87xiFSdk4g1CME7QZg3uwTez+TSTjc= -cloud.google.com/go v0.46.3/go.mod h1:a6bKKbmY7er1mI7TEI4lsAkts/mkhTSZK8w33B4RAg0= -cloud.google.com/go v0.50.0/go.mod h1:r9sluTvynVuxRIOHXQEHMFffphuXHOMZMycpNR5e6To= -cloud.google.com/go v0.52.0/go.mod h1:pXajvRH/6o3+F9jDHZWQ5PbGhn+o8w9qiu/CffaVdO4= -cloud.google.com/go v0.53.0/go.mod h1:fp/UouUEsRkN6ryDKNW/Upv/JBKnv6WDthjR6+vze6M= -cloud.google.com/go v0.54.0/go.mod h1:1rq2OEkV3YMf6n/9ZvGWI3GWw0VoqH/1x2nd8Is/bPc= -cloud.google.com/go v0.56.0/go.mod h1:jr7tqZxxKOVYizybht9+26Z/gUq7tiRzu+ACVAMbKVk= -cloud.google.com/go v0.57.0/go.mod h1:oXiQ6Rzq3RAkkY7N6t3TcE6jE+CIBBbA36lwQ1JyzZs= -cloud.google.com/go v0.62.0/go.mod h1:jmCYTdRCQuc1PHIIJ/maLInMho30T/Y0M4hTdTShOYc= -cloud.google.com/go v0.65.0/go.mod h1:O5N8zS7uWy9vkA9vayVHs65eM1ubvY4h553ofrNHObY= -cloud.google.com/go v0.72.0/go.mod h1:M+5Vjvlc2wnp6tjzE102Dw08nGShTscUx2nZMufOKPI= -cloud.google.com/go v0.74.0/go.mod h1:VV1xSbzvo+9QJOxLDaJfTjx5e+MePCpCWwvftOeQmWk= -cloud.google.com/go v0.75.0/go.mod h1:VGuuCn7PG0dwsd5XPVm2Mm3wlh3EL55/79EKB6hlPTY= -cloud.google.com/go/bigquery v1.0.1/go.mod h1:i/xbL2UlR5RvWAURpBYZTtm/cXjCha9lbfbpx4poX+o= -cloud.google.com/go/bigquery v1.3.0/go.mod h1:PjpwJnslEMmckchkHFfq+HTD2DmtT67aNFKH1/VBDHE= -cloud.google.com/go/bigquery v1.4.0/go.mod h1:S8dzgnTigyfTmLBfrtrhyYhwRxG72rYxvftPBK2Dvzc= -cloud.google.com/go/bigquery v1.5.0/go.mod h1:snEHRnqQbz117VIFhE8bmtwIDY80NLUZUMb4Nv6dBIg= -cloud.google.com/go/bigquery v1.7.0/go.mod h1://okPTzCYNXSlb24MZs83e2Do+h+VXtc4gLoIoXIAPc= -cloud.google.com/go/bigquery v1.8.0/go.mod h1:J5hqkt3O0uAFnINi6JXValWIb1v0goeZM77hZzJN/fQ= -cloud.google.com/go/datastore v1.0.0/go.mod h1:LXYbyblFSglQ5pkeyhO+Qmw7ukd3C+pD7TKLgZqpHYE= -cloud.google.com/go/datastore v1.1.0/go.mod h1:umbIZjpQpHh4hmRpGhH4tLFup+FVzqBi1b3c64qFpCk= -cloud.google.com/go/pubsub v1.0.1/go.mod h1:R0Gpsv3s54REJCy4fxDixWD93lHJMoZTyQ2kNxGRt3I= -cloud.google.com/go/pubsub v1.1.0/go.mod h1:EwwdRX2sKPjnvnqCa270oGRyludottCI76h+R3AArQw= -cloud.google.com/go/pubsub v1.2.0/go.mod h1:jhfEVHT8odbXTkndysNHCcx0awwzvfOlguIAii9o8iA= -cloud.google.com/go/pubsub v1.3.1/go.mod h1:i+ucay31+CNRpDW4Lu78I4xXG+O1r/MAHgjpRVR+TSU= -cloud.google.com/go/storage v1.0.0/go.mod h1:IhtSnM/ZTZV8YYJWCY8RULGVqBDmpoyjwiyrjsg+URw= -cloud.google.com/go/storage v1.5.0/go.mod h1:tpKbwo567HUNpVclU5sGELwQWBDZ8gh0ZeosJ0Rtdos= -cloud.google.com/go/storage 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h1:r/3tXBNzIEhYS9I1OUVjXDlt8tc493IdKGjtUeSXeh4= -google.golang.org/protobuf v1.25.0/go.mod h1:9JNX74DMeImyA3h4bdi1ymwjUzf21/xIlbajtzgsN7c= gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= -gopkg.in/check.v1 v1.0.0-20180628173108-788fd7840127/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c h1:Hei/4ADfdWqJk1ZMxUNpqntNwaWcugrBjAiHlqqRiVk= gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c/go.mod h1:JHkPIbrfpd72SG/EVd6muEfDQjcINNoR0C8j2r3qZ4Q= -gopkg.in/errgo.v2 v2.1.0/go.mod h1:hNsd1EY+bozCKY1Ytp96fpM3vjJbqLJn88ws8XvfDNI= gopkg.in/ini.v1 v1.67.0 h1:Dgnx+6+nfE+IfzjUEISNeydPJh9AXNNsWbGP9KzCsOA= gopkg.in/ini.v1 v1.67.0/go.mod h1:pNLf8WUiyNEtQjuu5G5vTm06TEv9tsIgeAvK8hOrP4k= -gopkg.in/yaml.v2 v2.2.2/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI= gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM= gopkg.in/yaml.v3 v3.0.1 h1:fxVm/GzAzEWqLHuvctI91KS9hhNmmWOoWu0XTYJS7CA= gopkg.in/yaml.v3 v3.0.1/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM= -honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4= -honnef.co/go/tools v0.0.0-20190106161140-3f1c8253044a/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4= -honnef.co/go/tools v0.0.0-20190418001031-e561f6794a2a/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4= -honnef.co/go/tools v0.0.0-20190523083050-ea95bdfd59fc/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4= -honnef.co/go/tools v0.0.1-2019.2.3/go.mod h1:a3bituU0lyd329TUQxRnasdCoJDkEUEAqEt0JzvZhAg= -honnef.co/go/tools v0.0.1-2020.1.3/go.mod h1:X/FiERA/W4tHapMX5mGpAtMSVEeEUOyHaw9vFzvIQ3k= -honnef.co/go/tools v0.0.1-2020.1.4/go.mod h1:X/FiERA/W4tHapMX5mGpAtMSVEeEUOyHaw9vFzvIQ3k= -rsc.io/binaryregexp v0.2.0/go.mod h1:qTv7/COck+e2FymRvadv62gMdZztPaShugOCi3I+8D8= -rsc.io/quote/v3 v3.1.0/go.mod h1:yEA65RcK8LyAZtP9Kv3t0HmxON59tX3rD+tICJqUlj0= -rsc.io/sampler v1.3.0/go.mod h1:T1hPZKmBbMNahiBKFy5HrXp6adAjACjK9JXDnKaTXpA= From 7a62248a40416586e5d5e7d1a77adb6fe4f360fe Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 24 Jan 2024 08:11:45 +0100 Subject: [PATCH 08/14] point docker compose to 1.8.2 --- payload/docker-compose.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/payload/docker-compose.yml b/payload/docker-compose.yml index c96507a..ab662a4 100644 --- a/payload/docker-compose.yml +++ b/payload/docker-compose.yml @@ -13,7 +13,7 @@ services: - chemotion msconvert: - image: ptrxyz/chemotion:msconvert-1.8.1 + image: ptrxyz/chemotion:msconvert-1.8.2 restart: unless-stopped hostname: msconvert volumes: @@ -22,7 +22,7 @@ services: - chemotion spectra: - image: ptrxyz/chemotion:spectra-1.8.1 + image: ptrxyz/chemotion:spectra-1.8.2 restart: unless-stopped hostname: spectra volumes: @@ -33,7 +33,7 @@ services: - chemotion worker: - image: ptrxyz/chemotion:eln-1.8.1 + image: ptrxyz/chemotion:eln-1.8.2 restart: unless-stopped environment: - CONFIG_ROLE=worker @@ -49,7 +49,7 @@ services: - chemotion eln: - image: ptrxyz/chemotion:eln-1.8.1 + image: ptrxyz/chemotion:eln-1.8.2 restart: unless-stopped environment: - CONFIG_ROLE=eln @@ -68,7 +68,7 @@ services: - chemotion ketchersvc: - image: ptrxyz/chemotion:ketchersvc-1.8.1 + image: ptrxyz/chemotion:ketchersvc-1.8.2 restart: unless-stopped environment: - CONFIG_KETCHER_URL=http://eln:4000/ketcher/ @@ -80,7 +80,7 @@ services: - chemotion converter: - image: ptrxyz/chemotion:converter-1.8.1 + image: ptrxyz/chemotion:converter-1.8.2 restart: unless-stopped environment: - SECRET_KEY=imsupersecretandwanttobechanged From 29d4a47724d564511509bc1f19e1a029227c955c Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 24 Jan 2024 08:18:09 +0100 Subject: [PATCH 09/14] version 0.2.16 - update to ELN v1.8.2 --- README.md | 2 +- cli/root-instance-new.go | 8 ++++---- cli/root.go | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 46a3e83..f8c7b92 100644 --- a/README.md +++ b/README.md @@ -26,7 +26,7 @@ ChemCLI tool supports the following versions of Chemotion ELN: | ELN Version | `docker-compose.yml` file | Supported by chemCLI version | | ---------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------ | ------------------------------------------------------------- | -| [v1.8.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.8.1) | [eln-1.8.1](https://raw.githubusercontent.com/Chemotion/ChemCLI/681cab48409d6c9a6be51ac5903e04890467d998/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | +| [v1.8.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.8.1) | [eln-1.8.1](https://raw.githubusercontent.com/Chemotion/ChemCLI/7a62248a40416586e5d5e7d1a77adb6fe4f360fe/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.7.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.7.3) | [eln-1.7.3](https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.6.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.6.2) | [eln-1.6.2](https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | diff --git a/cli/root-instance-new.go b/cli/root-instance-new.go index ce4cef4..0f273e6 100644 --- a/cli/root-instance-new.go +++ b/cli/root-instance-new.go @@ -15,10 +15,10 @@ import ( // helper to determine the required compose file func getComposeAddressToUse(currentVersion, action string) (use string) { versions := make(map[string]string) - latestForThisCLIRelease := "1.8.1" - orderVersions := []string{latestForThisCLIRelease, "1.8.0", "1.7.3", "1.6.2"} // descending order - versions[latestForThisCLIRelease] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/681cab48409d6c9a6be51ac5903e04890467d998/payload/docker-compose.yml" - versions["1.8.0"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/0664a5667d06da7898e83a11e31e4b471235daf1/payload/docker-compose.yml" + latestForThisCLIRelease := "1.8.2" + orderVersions := []string{latestForThisCLIRelease, "1.8.1", "1.7.3", "1.6.2"} // descending order + versions[latestForThisCLIRelease] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/7a62248a40416586e5d5e7d1a77adb6fe4f360fe/payload/docker-compose.yml" + versions["1.8.1"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/681cab48409d6c9a6be51ac5903e04890467d998/payload/docker-compose.yml" versions["1.7.3"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml" versions["1.6.2"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml" validVersions := []string{} diff --git a/cli/root.go b/cli/root.go index a1fef96..e532ef6 100644 --- a/cli/root.go +++ b/cli/root.go @@ -68,7 +68,7 @@ const ( // configuration and logging var ( // version number, here to allow override - versionCLI = "0.2.15" + versionCLI = "0.2.16" // current shell shell string // currently selected instance From 7e1d6057cf637ad696326ffa834510a444bd496d Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 24 Jan 2024 08:27:06 +0100 Subject: [PATCH 10/14] fix: typo --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index f8c7b92..a2a87cc 100644 --- a/README.md +++ b/README.md @@ -26,7 +26,7 @@ ChemCLI tool supports the following versions of Chemotion ELN: | ELN Version | `docker-compose.yml` file | Supported by chemCLI version | | ---------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------ | ------------------------------------------------------------- | -| [v1.8.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.8.1) | [eln-1.8.1](https://raw.githubusercontent.com/Chemotion/ChemCLI/7a62248a40416586e5d5e7d1a77adb6fe4f360fe/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | +| [v1.8.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.8.2) | [eln-1.8.2](https://raw.githubusercontent.com/Chemotion/ChemCLI/7a62248a40416586e5d5e7d1a77adb6fe4f360fe/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.7.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.7.3) | [eln-1.7.3](https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.6.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.6.2) | [eln-1.6.2](https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | From 1da07af80a2e02b6c57acd941caf40d51d3ddd7f Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Mon, 6 May 2024 14:45:07 +0200 Subject: [PATCH 11/14] Update docker-compose.yml to point to v1.9.3 --- payload/docker-compose.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/payload/docker-compose.yml b/payload/docker-compose.yml index ab662a4..18acf88 100644 --- a/payload/docker-compose.yml +++ b/payload/docker-compose.yml @@ -13,7 +13,7 @@ services: - chemotion msconvert: - image: ptrxyz/chemotion:msconvert-1.8.2 + image: ptrxyz/chemotion:msconvert-1.9.3 restart: unless-stopped hostname: msconvert volumes: @@ -22,7 +22,7 @@ services: - chemotion spectra: - image: ptrxyz/chemotion:spectra-1.8.2 + image: ptrxyz/chemotion:spectra-1.9.3 restart: unless-stopped hostname: spectra volumes: @@ -33,7 +33,7 @@ services: - chemotion worker: - image: ptrxyz/chemotion:eln-1.8.2 + image: ptrxyz/chemotion:eln-1.9.3 restart: unless-stopped environment: - CONFIG_ROLE=worker @@ -49,7 +49,7 @@ services: - chemotion eln: - image: ptrxyz/chemotion:eln-1.8.2 + image: ptrxyz/chemotion:eln-1.9.3 restart: unless-stopped environment: - CONFIG_ROLE=eln @@ -68,7 +68,7 @@ services: - chemotion ketchersvc: - image: ptrxyz/chemotion:ketchersvc-1.8.2 + image: ptrxyz/chemotion:ketchersvc-1.9.3 restart: unless-stopped environment: - CONFIG_KETCHER_URL=http://eln:4000/ketcher/ @@ -80,7 +80,7 @@ services: - chemotion converter: - image: ptrxyz/chemotion:converter-1.8.2 + image: ptrxyz/chemotion:converter-1.9.3 restart: unless-stopped environment: - SECRET_KEY=imsupersecretandwanttobechanged From f30d8ae2dfdfb0160c3ceef30d5540e404c4f23a Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 8 May 2024 08:19:23 +0200 Subject: [PATCH 12/14] Update docker-compose.yml to point to v1.9.2 Decision was made to package and release v1.9.2 --- payload/docker-compose.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/payload/docker-compose.yml b/payload/docker-compose.yml index 18acf88..addfb15 100644 --- a/payload/docker-compose.yml +++ b/payload/docker-compose.yml @@ -13,7 +13,7 @@ services: - chemotion msconvert: - image: ptrxyz/chemotion:msconvert-1.9.3 + image: ptrxyz/chemotion:msconvert-1.9.2 restart: unless-stopped hostname: msconvert volumes: @@ -22,7 +22,7 @@ services: - chemotion spectra: - image: ptrxyz/chemotion:spectra-1.9.3 + image: ptrxyz/chemotion:spectra-1.9.2 restart: unless-stopped hostname: spectra volumes: @@ -33,7 +33,7 @@ services: - chemotion worker: - image: ptrxyz/chemotion:eln-1.9.3 + image: ptrxyz/chemotion:eln-1.9.2 restart: unless-stopped environment: - CONFIG_ROLE=worker @@ -49,7 +49,7 @@ services: - chemotion eln: - image: ptrxyz/chemotion:eln-1.9.3 + image: ptrxyz/chemotion:eln-1.9.2 restart: unless-stopped environment: - CONFIG_ROLE=eln @@ -68,7 +68,7 @@ services: - chemotion ketchersvc: - image: ptrxyz/chemotion:ketchersvc-1.9.3 + image: ptrxyz/chemotion:ketchersvc-1.9.2 restart: unless-stopped environment: - CONFIG_KETCHER_URL=http://eln:4000/ketcher/ @@ -80,7 +80,7 @@ services: - chemotion converter: - image: ptrxyz/chemotion:converter-1.9.3 + image: ptrxyz/chemotion:converter-1.9.2 restart: unless-stopped environment: - SECRET_KEY=imsupersecretandwanttobechanged From b7ad83fba1e1db6c5525a11b06bf7eed59a769f6 Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 15 May 2024 10:54:10 +0200 Subject: [PATCH 13/14] Revert "Update docker-compose.yml to point to v1.9.2" ELN version 1.9.3 is the stable release version. This reverts commit f30d8ae2dfdfb0160c3ceef30d5540e404c4f23a. --- payload/docker-compose.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/payload/docker-compose.yml b/payload/docker-compose.yml index addfb15..18acf88 100644 --- a/payload/docker-compose.yml +++ b/payload/docker-compose.yml @@ -13,7 +13,7 @@ services: - chemotion msconvert: - image: ptrxyz/chemotion:msconvert-1.9.2 + image: ptrxyz/chemotion:msconvert-1.9.3 restart: unless-stopped hostname: msconvert volumes: @@ -22,7 +22,7 @@ services: - chemotion spectra: - image: ptrxyz/chemotion:spectra-1.9.2 + image: ptrxyz/chemotion:spectra-1.9.3 restart: unless-stopped hostname: spectra volumes: @@ -33,7 +33,7 @@ services: - chemotion worker: - image: ptrxyz/chemotion:eln-1.9.2 + image: ptrxyz/chemotion:eln-1.9.3 restart: unless-stopped environment: - CONFIG_ROLE=worker @@ -49,7 +49,7 @@ services: - chemotion eln: - image: ptrxyz/chemotion:eln-1.9.2 + image: ptrxyz/chemotion:eln-1.9.3 restart: unless-stopped environment: - CONFIG_ROLE=eln @@ -68,7 +68,7 @@ services: - chemotion ketchersvc: - image: ptrxyz/chemotion:ketchersvc-1.9.2 + image: ptrxyz/chemotion:ketchersvc-1.9.3 restart: unless-stopped environment: - CONFIG_KETCHER_URL=http://eln:4000/ketcher/ @@ -80,7 +80,7 @@ services: - chemotion converter: - image: ptrxyz/chemotion:converter-1.9.2 + image: ptrxyz/chemotion:converter-1.9.3 restart: unless-stopped environment: - SECRET_KEY=imsupersecretandwanttobechanged From 9969f7f606d52029eabffb0b5c57667e246f49e5 Mon Sep 17 00:00:00 2001 From: "Shashank S. Harivyasi" <45761248+harivyasi@users.noreply.github.com> Date: Wed, 15 May 2024 11:08:28 +0200 Subject: [PATCH 14/14] version 0.2.17 - update to ELN v1.9.3 - Go update to 1.22 - small bugfix in instance-ping - disable more characters from instance name - remove `version` from `docker-compose.yml` --- README.md | 5 +++- cli/prompt.go | 6 +++-- cli/root-instance-backup.go | 37 ++++++++++++++------------- cli/root-instance-new.go | 20 +++++---------- cli/root-instance-ping.go | 2 +- cli/root.go | 2 +- go.mod | 20 +++++++-------- go.sum | 50 +++++++++++++++++++------------------ payload/docker-compose.yml | 1 - 9 files changed, 72 insertions(+), 71 deletions(-) diff --git a/README.md b/README.md index a2a87cc..b3ba1e1 100644 --- a/README.md +++ b/README.md @@ -26,11 +26,14 @@ ChemCLI tool supports the following versions of Chemotion ELN: | ELN Version | `docker-compose.yml` file | Supported by chemCLI version | | ---------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------ | ------------------------------------------------------------- | +| [v1.9.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.9.3) | [eln-1.9.3](https://raw.githubusercontent.com/Chemotion/ChemOrc/b7ad83fba1e1db6c5525a11b06bf7eed59a769f6/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.8.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.8.2) | [eln-1.8.2](https://raw.githubusercontent.com/Chemotion/ChemCLI/7a62248a40416586e5d5e7d1a77adb6fe4f360fe/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.7.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.7.3) | [eln-1.7.3](https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | | [v1.6.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.6.2) | [eln-1.6.2](https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml) | [0.2.x](https://github.com/Chemotion/ChemCLI/releases/latest) | -> Chemotion ELN version [1.4.x](https://github.com/ComPlat/chemotion_ELN/releases/tag/v1.4.1-3) is **not supported** because it requires [manual changes](https://chemotion.net/docs/eln/install_configure/manual_install#only-when-installing-or-upgrading-to-version-141) to the installation after downloading the [`docker-compose.yml`](https://raw.githubusercontent.com/ptrxyz/chemotion/ba4b4620ab2aaa6be32df78189c29970335b1989/docker-compose.yml) file. +> Chemotion ELN versions 1.9.0 and 1.9.1 were not released as dockerized images, and therefore cannot be installed using this tool. + +> Chemotion ELN versions 1.5.x and below are not supported. Kindly update your instance as soon as possible. If required, please contact the [helpdesk](https://chemotion.net/helpdesk). ## Concept for chemCLI diff --git a/cli/prompt.go b/cli/prompt.go index 8fa26e2..6d7858c 100644 --- a/cli/prompt.go +++ b/cli/prompt.go @@ -130,8 +130,10 @@ func fileValidate(input string) (err error) { // kind of opposite of instanceValidate func newInstanceValidate(input string) (err error) { err = textValidate(input) - if strings.ContainsRune(input, '.') { - err = toError("cannot have `.` in an instance name") + for _, char := range []rune{'.', '/', '\\', ':'} { + if strings.ContainsRune(input, char) { + err = toError("cannot have `%c` in an instance name", char) + } } if toLower(input) != input { err = toError("cannot have an uppercase letter") // because case is not preserved by Viper v1.x diff --git a/cli/root-instance-backup.go b/cli/root-instance-backup.go index c2e18f3..7e1404a 100644 --- a/cli/root-instance-backup.go +++ b/cli/root-instance-backup.go @@ -3,29 +3,32 @@ package cli import ( "strings" - "github.com/chigopher/pathlib" "github.com/spf13/cobra" ) func instanceBackup(givenName, portion string) { - calledCmd := toSprintf("--profile execution run --rm -e BACKUP_WHAT=%s executor chemotion backup", portion) - var backupFile pathlib.Path - if strings.HasSuffix(conf.GetString(joinKey(instancesWord, currentInstance, "image")), "eln-1.3.1p220712") { - backupFile = downloadFile(backupshURL, "temp.backup.sh") - var err error - var output string - var out []byte - commands := []string{"create --name backcon ptrxyz/chemotion:eln-1.3.1p220712", "cp temp.backup.sh backcon:/embed/scripts/backup.sh", "commit backcon ptrxyz/chemotion:eln-1.3.1p220712", "rm backcon"} - for _, comm := range commands { - out, err = execShell(toSprintf("%s %s", virtualizer, comm)) - output = toSprintf("%s %s", output, out) - if err != nil { - zboth.Fatal().Err(err).Msgf("command failed: %s %s", virtualizer, comm) + if strings.HasSuffix(conf.GetString(joinKey(instancesWord, givenName, "image")), "eln-1.3.1p220712") { + func() { // for version 1.3.1p220712 + + backupFile := downloadFile(backupshURL, "temp.backup.sh") + var ( + err error + output string + out []byte + ) + commands := []string{"create --name backcon ptrxyz/chemotion:eln-1.3.1p220712", "cp temp.backup.sh backcon:/embed/scripts/backup.sh", "commit backcon ptrxyz/chemotion:eln-1.3.1p220712", "rm backcon"} + for _, comm := range commands { + out, err = execShell(toSprintf("%s %s", virtualizer, comm)) + output = toSprintf("%s %s", output, out) + if err != nil { + zboth.Fatal().Err(err).Msgf("command failed: %s %s", virtualizer, comm) + } } - } - zboth.Debug().Msgf(output) - backupFile.Remove() + zboth.Debug().Msgf(output) + backupFile.Remove() + }() } + calledCmd := toSprintf("--profile execution run --rm -e BACKUP_WHAT=%s executor chemotion backup", portion) if _, successBackUp, _ := gotoFolder(givenName), callVirtualizer(composeCall+calledCmd), gotoFolder("work.dir"); successBackUp { zboth.Info().Msgf("Backup successful.") } else { diff --git a/cli/root-instance-new.go b/cli/root-instance-new.go index 0f273e6..0d26437 100644 --- a/cli/root-instance-new.go +++ b/cli/root-instance-new.go @@ -15,12 +15,12 @@ import ( // helper to determine the required compose file func getComposeAddressToUse(currentVersion, action string) (use string) { versions := make(map[string]string) - latestForThisCLIRelease := "1.8.2" - orderVersions := []string{latestForThisCLIRelease, "1.8.1", "1.7.3", "1.6.2"} // descending order - versions[latestForThisCLIRelease] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/7a62248a40416586e5d5e7d1a77adb6fe4f360fe/payload/docker-compose.yml" - versions["1.8.1"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/681cab48409d6c9a6be51ac5903e04890467d998/payload/docker-compose.yml" + latestForThisCLIRelease := "1.9.3" + orderVersions := []string{latestForThisCLIRelease, "1.9.2", "1.8.2", "1.7.3"} // descending order + versions[latestForThisCLIRelease] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/b7ad83fba1e1db6c5525a11b06bf7eed59a769f6/payload/docker-compose.yml" + versions["1.9.2"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/f30d8ae2dfdfb0160c3ceef30d5540e404c4f23a/payload/docker-compose.yml" + versions["1.8.2"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/7a62248a40416586e5d5e7d1a77adb6fe4f360fe/payload/docker-compose.yml" versions["1.7.3"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/b8bb1280a6e042b96b8d3e71d030709b113686bc/payload/docker-compose.yml" - versions["1.6.2"] = "https://raw.githubusercontent.com/Chemotion/ChemCLI/e577832edaba14fa21ee9aa9288e4b00052729c8/payload/docker-compose.yml" validVersions := []string{} for _, version := range orderVersions { now, _ := vercompare.NewVersion(currentVersion) @@ -118,12 +118,6 @@ func getFreshPort(kind string) (port uint64) { return } -// to create a development instance -func instanceCreateDevelopment(details map[string]string) (success bool) { - zboth.Fatal().Err(toError("not implemented")).Msgf("This feature - development instances of chemotion - is currently under development.") - return false -} - func createExtendedCompose(details map[string]string, use string) (extendedCompose viper.Viper) { name := details["name"] extendedCompose = *viper.New() @@ -332,9 +326,7 @@ var newInstanceRootCmd = &cobra.Command{ zboth.Info().Msgf("Successfully created a new production instance. Once switched on, it can be found at: %s", details["accessAddress"]) } case "Development": - if success := instanceCreateDevelopment(details); success { - zboth.Info().Msgf("Successfully created a new development instance.") - } + zboth.Fatal().Err(toError("not implemented")).Msgf("This feature - deployment of development instances of chemotion using ChemCLI - is currently under development.") } } }, diff --git a/cli/root-instance-ping.go b/cli/root-instance-ping.go index a8809a2..23b6817 100644 --- a/cli/root-instance-ping.go +++ b/cli/root-instance-ping.go @@ -8,7 +8,7 @@ import ( ) func instancePing(givenName string) (response string) { - url := conf.GetString(joinKey(instancesWord, currentInstance, "accessAddress")) + url := conf.GetString(joinKey(instancesWord, givenName, "accessAddress")) client := http.Client{Timeout: 2 * time.Second} if req, err := http.NewRequest("HEAD", url, nil); err == nil { if resp, err := client.Do(req); err == nil { diff --git a/cli/root.go b/cli/root.go index e532ef6..67b22c7 100644 --- a/cli/root.go +++ b/cli/root.go @@ -68,7 +68,7 @@ const ( // configuration and logging var ( // version number, here to allow override - versionCLI = "0.2.16" + versionCLI = "0.2.17" // current shell shell string // currently selected instance diff --git a/go.mod b/go.mod index 8fee600..d11b414 100644 --- a/go.mod +++ b/go.mod @@ -1,6 +1,6 @@ module github.com/Chemotion/ChemCLI -go 1.21 +go 1.22 require ( github.com/cavaliergopher/grab/v3 v3.0.1 @@ -8,7 +8,7 @@ require ( github.com/google/uuid v1.6.0 github.com/hashicorp/go-version v1.6.0 github.com/manifoldco/promptui v0.9.0 - github.com/rs/zerolog v1.31.0 + github.com/rs/zerolog v1.32.0 github.com/shirou/gopsutil v3.21.11+incompatible github.com/spf13/cobra v1.8.0 github.com/spf13/viper v1.18.2 @@ -27,23 +27,23 @@ require ( github.com/mattn/go-isatty v0.0.20 // indirect github.com/mitchellh/colorstring v0.0.0-20190213212951-d06e56a500db github.com/mitchellh/mapstructure v1.5.0 // indirect - github.com/pelletier/go-toml/v2 v2.1.1 // indirect - github.com/rivo/uniseg v0.4.4 // indirect + github.com/pelletier/go-toml/v2 v2.2.2 // indirect + github.com/rivo/uniseg v0.4.7 // indirect github.com/rogpeppe/go-internal v1.12.0 // indirect github.com/sagikazarmark/locafero v0.4.0 // indirect github.com/sagikazarmark/slog-shim v0.1.0 // indirect - github.com/schollz/progressbar/v3 v3.14.1 + github.com/schollz/progressbar/v3 v3.14.2 github.com/sourcegraph/conc v0.3.0 // indirect github.com/spf13/afero v1.11.0 // indirect github.com/spf13/cast v1.6.0 // indirect github.com/spf13/pflag v1.0.5 // indirect github.com/subosito/gotenv v1.6.0 // indirect - github.com/yusufpapurcu/wmi v1.2.3 // indirect + github.com/yusufpapurcu/wmi v1.2.4 // indirect go.uber.org/multierr v1.11.0 // indirect - golang.org/x/exp v0.0.0-20240119083558-1b970713d09a // indirect - golang.org/x/sys v0.16.0 // indirect - golang.org/x/term v0.16.0 // indirect - golang.org/x/text v0.14.0 // indirect + golang.org/x/exp v0.0.0-20240506185415-9bf2ced13842 // indirect + golang.org/x/sys v0.20.0 // indirect + golang.org/x/term v0.20.0 // indirect + golang.org/x/text v0.15.0 // indirect gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c // indirect gopkg.in/ini.v1 v1.67.0 // indirect gopkg.in/yaml.v3 v3.0.1 // indirect diff --git a/go.sum b/go.sum index 6b55786..df2727d 100644 --- a/go.sum +++ b/go.sum @@ -26,8 +26,8 @@ github.com/go-ole/go-ole v1.3.0 h1:Dt6ye7+vXGIKZ7Xtk4s6/xVdGDQynvom7xCFEdWr6uE= github.com/go-ole/go-ole v1.3.0/go.mod h1:5LS6F96DhAwUc7C+1HLexzMXY1xGRSryjyPPKW6zv78= github.com/godbus/dbus/v5 v5.0.4/go.mod h1:xhWf0FNVPg57R7Z0UbKHbJfkEywrmjJnf7w5xrFpKfA= github.com/google/go-cmp v0.5.2/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE= -github.com/google/go-cmp v0.5.9 h1:O2Tfq5qg4qc4AmwVlvv0oLiVAGB7enBSJ2x2DqQFi38= -github.com/google/go-cmp v0.5.9/go.mod h1:17dUlkBOakJ0+DkrSSNjCkIjxS6bF9zb3elmeNGIjoY= +github.com/google/go-cmp v0.6.0 h1:ofyhxvXcZhMsU5ulbFiLKl/XBFqE1GSq7atu8tAmTRI= +github.com/google/go-cmp v0.6.0/go.mod h1:17dUlkBOakJ0+DkrSSNjCkIjxS6bF9zb3elmeNGIjoY= github.com/google/go-github v17.0.0+incompatible h1:N0LgJ1j65A7kfXrZnUDaYCs/Sf4rEjNlfyDHW9dolSY= github.com/google/go-github v17.0.0+incompatible/go.mod h1:zLgOLi98H3fifZn+44m+umXrS52loVEgC2AApnigrVQ= github.com/google/go-querystring v1.1.0 h1:AnCroh3fv4ZBgVIf1Iwtovgjaw/GiKJo8M8yD/fhyJ8= @@ -62,26 +62,26 @@ github.com/mitchellh/colorstring v0.0.0-20190213212951-d06e56a500db h1:62I3jR2Em github.com/mitchellh/colorstring v0.0.0-20190213212951-d06e56a500db/go.mod h1:l0dey0ia/Uv7NcFFVbCLtqEBQbrT4OCwCSKTEv6enCw= github.com/mitchellh/mapstructure v1.5.0 h1:jeMsZIYE/09sWLaz43PL7Gy6RuMjD2eJVyuac5Z2hdY= github.com/mitchellh/mapstructure v1.5.0/go.mod h1:bFUtVrKA4DC2yAKiSyO/QUcy7e+RRV2QTWOzhPopBRo= -github.com/pelletier/go-toml/v2 v2.1.1 h1:LWAJwfNvjQZCFIDKWYQaM62NcYeYViCmWIwmOStowAI= -github.com/pelletier/go-toml/v2 v2.1.1/go.mod h1:tJU2Z3ZkXwnxa4DPO899bsyIoywizdUvyaeZurnPPDc= +github.com/pelletier/go-toml/v2 v2.2.2 h1:aYUidT7k73Pcl9nb2gScu7NSrKCSHIDE89b3+6Wq+LM= +github.com/pelletier/go-toml/v2 v2.2.2/go.mod h1:1t835xjRzz80PqgE6HHgN2JOsmgYu/h4qDAS4n929Rs= github.com/pkg/errors v0.9.1/go.mod h1:bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0= github.com/pmezard/go-difflib v1.0.0/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4= github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2 h1:Jamvg5psRIccs7FGNTlIRMkT8wgtp5eCXdBlqhYGL6U= github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4= -github.com/rivo/uniseg v0.4.4 h1:8TfxU8dW6PdqD27gjM8MVNuicgxIjxpm4K7x4jp8sis= -github.com/rivo/uniseg v0.4.4/go.mod h1:FN3SvrM+Zdj16jyLfmOkMNblXMcoc8DfTHruCPUcx88= +github.com/rivo/uniseg v0.4.7 h1:WUdvkW8uEhrYfLC4ZzdpI2ztxP1I582+49Oc5Mq64VQ= +github.com/rivo/uniseg v0.4.7/go.mod h1:FN3SvrM+Zdj16jyLfmOkMNblXMcoc8DfTHruCPUcx88= github.com/rogpeppe/go-internal v1.12.0 h1:exVL4IDcn6na9z1rAb56Vxr+CgyK3nn3O+epU5NdKM8= github.com/rogpeppe/go-internal v1.12.0/go.mod h1:E+RYuTGaKKdloAfM02xzb0FW3Paa99yedzYV+kq4uf4= github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg= -github.com/rs/zerolog v1.31.0 h1:FcTR3NnLWW+NnTwwhFWiJSZr4ECLpqCm6QsEnyvbV4A= -github.com/rs/zerolog v1.31.0/go.mod h1:/7mN4D5sKwJLZQ2b/znpjC3/GQWY/xaDXUM0kKWRHss= +github.com/rs/zerolog v1.32.0 h1:keLypqrlIjaFsbmJOBdB/qvyF8KEtCWHwobLp5l/mQ0= +github.com/rs/zerolog v1.32.0/go.mod h1:/7mN4D5sKwJLZQ2b/znpjC3/GQWY/xaDXUM0kKWRHss= github.com/russross/blackfriday/v2 v2.1.0/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM= github.com/sagikazarmark/locafero v0.4.0 h1:HApY1R9zGo4DBgr7dqsTH/JJxLTTsOt7u6keLGt6kNQ= github.com/sagikazarmark/locafero v0.4.0/go.mod h1:Pe1W6UlPYUk/+wc/6KFhbORCfqzgYEpgQ3O5fPuL3H4= github.com/sagikazarmark/slog-shim v0.1.0 h1:diDBnUNK9N/354PgrxMywXnAwEr1QZcOr6gto+ugjYE= github.com/sagikazarmark/slog-shim v0.1.0/go.mod h1:SrcSrq8aKtyuqEI1uvTDTK1arOWRIczQRv+GVI1AkeQ= -github.com/schollz/progressbar/v3 v3.14.1 h1:VD+MJPCr4s3wdhTc7OEJ/Z3dAeBzJ7yKH/P4lC5yRTI= -github.com/schollz/progressbar/v3 v3.14.1/go.mod h1:Zc9xXneTzWXF81TGoqL71u0sBPjULtEHYtj/WVgVy8E= +github.com/schollz/progressbar/v3 v3.14.2 h1:EducH6uNLIWsr560zSV1KrTeUb/wZGAHqyMFIEa99ks= +github.com/schollz/progressbar/v3 v3.14.2/go.mod h1:aQAZQnhF4JGFtRJiw/eobaXpsqpVQAftEQ+hLGXaRc4= github.com/shirou/gopsutil v3.21.11+incompatible h1:+1+c1VGhc88SSonWP6foOcLhvnKlUeu/erjjvaPEYiI= github.com/shirou/gopsutil v3.21.11+incompatible/go.mod h1:5b4v6he4MtMOwMlS0TUMTu2PcXUg8+E1lC7eC3UO/RA= github.com/sourcegraph/conc v0.3.0 h1:OQTbbt6P72L20UqAkXXuLOj79LfEanQ+YQFNpLA9ySo= @@ -98,21 +98,23 @@ github.com/spf13/viper v1.18.2 h1:LUXCnvUvSM6FXAsj6nnfc8Q2tp1dIgUfY9Kc8GsSOiQ= github.com/spf13/viper v1.18.2/go.mod h1:EKmWIqdnk5lOcmR72yw6hS+8OPYcwD0jteitLMVB+yk= github.com/stretchr/objx v0.1.0/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME= 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h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf8C91i36aY= github.com/subosito/gotenv v1.6.0 h1:9NlTDc1FTs4qu0DDq7AEtTPNw6SVm7uBMsUCUjABIf8= github.com/subosito/gotenv v1.6.0/go.mod h1:Dk4QP5c2W3ibzajGcXpNraDfq2IrhjMIvMSWPKKo0FU= -github.com/yusufpapurcu/wmi v1.2.3 h1:E1ctvB7uKFMOJw3fdOW32DwGE9I7t++CRUEMKvFoFiw= -github.com/yusufpapurcu/wmi v1.2.3/go.mod h1:SBZ9tNy3G9/m5Oi98Zks0QjeHVDvuK0qfxQmPyzfmi0= +github.com/yusufpapurcu/wmi v1.2.4 h1:zFUKzehAFReQwLys1b/iSMl+JQGSCSjtVqQn9bBrPo0= +github.com/yusufpapurcu/wmi v1.2.4/go.mod h1:SBZ9tNy3G9/m5Oi98Zks0QjeHVDvuK0qfxQmPyzfmi0= go.uber.org/multierr v1.11.0 h1:blXXJkSxSSfBVBlC76pxqeO+LN3aDfLQo+309xJstO0= go.uber.org/multierr v1.11.0/go.mod h1:20+QtiLqy0Nd6FdQB9TLXag12DsQkrbs3htMFfDN80Y= -golang.org/x/exp v0.0.0-20240119083558-1b970713d09a h1:Q8/wZp0KX97QFTc2ywcOE0YRjZPVIx+MXInMzdvQqcA= -golang.org/x/exp v0.0.0-20240119083558-1b970713d09a/go.mod h1:idGWGoKP1toJGkd5/ig9ZLuPcZBC3ewk7SzmH0uou08= +golang.org/x/exp v0.0.0-20240506185415-9bf2ced13842 h1:vr/HnozRka3pE4EsMEg1lgkXJkTFJCVUX+S/ZT6wYzM= +golang.org/x/exp v0.0.0-20240506185415-9bf2ced13842/go.mod h1:XtvwrStGgqGPLc4cjQfWqZHG1YFdYs6swckp8vpsjnc= golang.org/x/sys v0.0.0-20181122145206-62eef0e2fa9b/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= golang.org/x/sys v0.0.0-20190916202348-b4ddaad3f8a3/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20220310020820-b874c991c1a5/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= @@ -120,14 +122,14 @@ golang.org/x/sys v0.0.0-20220811171246-fbc7d0a398ab/go.mod h1:oPkhp1MJrh7nUepCBc golang.org/x/sys v0.1.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.12.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= -golang.org/x/sys v0.14.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= -golang.org/x/sys v0.16.0 h1:xWw16ngr6ZMtmxDyKyIgsE93KNKz5HKmMa3b8ALHidU= -golang.org/x/sys v0.16.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= -golang.org/x/term v0.14.0/go.mod h1:TySc+nGkYR6qt8km8wUhuFRTVSMIX3XPR58y2lC8vww= -golang.org/x/term v0.16.0 h1:m+B6fahuftsE9qjo0VWp2FW0mB3MTJvR0BaMQrq0pmE= -golang.org/x/term v0.16.0/go.mod h1:yn7UURbUtPyrVJPGPq404EukNFxcm/foM+bV/bfcDsY= -golang.org/x/text v0.14.0 h1:ScX5w1eTa3QqT8oi6+ziP7dTV1S2+ALU0bI+0zXKWiQ= -golang.org/x/text v0.14.0/go.mod h1:18ZOQIKpY8NJVqYksKHtTdi31H5itFRjB5/qKTNYzSU= +golang.org/x/sys v0.17.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= +golang.org/x/sys v0.20.0 h1:Od9JTbYCk261bKm4M/mw7AklTlFYIa0bIp9BgSm1S8Y= +golang.org/x/sys v0.20.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= +golang.org/x/term v0.17.0/go.mod h1:lLRBjIVuehSbZlaOtGMbcMncT+aqLLLmKrsjNrUguwk= +golang.org/x/term v0.20.0 h1:VnkxpohqXaOBYJtBmEppKUG6mXpi+4O6purfc2+sMhw= +golang.org/x/term v0.20.0/go.mod h1:8UkIAJTvZgivsXaD6/pH6U9ecQzZ45awqEOzuCvwpFY= +golang.org/x/text v0.15.0 h1:h1V/4gjBv8v9cjcR6+AR5+/cIYK5N/WAgiv4xlsEtAk= +golang.org/x/text v0.15.0/go.mod h1:18ZOQIKpY8NJVqYksKHtTdi31H5itFRjB5/qKTNYzSU= golang.org/x/xerrors v0.0.0-20191204190536-9bdfabe68543/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0= gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c h1:Hei/4ADfdWqJk1ZMxUNpqntNwaWcugrBjAiHlqqRiVk= diff --git a/payload/docker-compose.yml b/payload/docker-compose.yml index 18acf88..6b23147 100644 --- a/payload/docker-compose.yml +++ b/payload/docker-compose.yml @@ -1,4 +1,3 @@ -version: "3.9" services: db: image: postgres:13