From 406c027f73e86140c4452868824ae44af6075e13 Mon Sep 17 00:00:00 2001 From: Fitz Elliott Date: Fri, 9 Aug 2024 13:00:15 -0400 Subject: [PATCH] Hotfixes for: double-encoded urls + dep upgrades Squashed commit of the following: commit 4f6adcead99386f5be8d58300aa151ea57679e27 Merge: f3925d325e 4edcf8be77 Author: Fitz Elliott Date: Fri Aug 9 12:07:43 2024 -0400 Merge branch 'hotfix/flake-error' into hotfix/pyupgrade-hotfixes-2 commit 4edcf8be77a62c2518fe7f61ccdda8c7870f6ae4 Author: Fitz Elliott Date: Fri Aug 9 12:07:11 2024 -0400 flake error - remove unused import commit f3925d325e41f2837d240166cd850bbe66d372bb Merge: f79ea48055 e7b5e4c15d Author: Fitz Elliott Date: Thu Aug 8 01:53:00 2024 -0400 Merge branch 'hotfix/dep-bumps-2' into hotfix/pyupgrade-hotfixes-2 commit e7b5e4c15d5afa35cbb3a8d02386f8cf2bbddc80 Author: Fitz Elliott Date: Thu Aug 8 01:52:29 2024 -0400 bump django dep commit d810142cd14fd69f722c1258a6f590e3d1bcdb46 Author: Fitz Elliott Date: Thu Aug 8 01:48:58 2024 -0400 update latent transitive deps commit f79ea4805502185170be070162fb286008de7732 Merge: f3c5b998c8 8296391bc5 Author: Fitz Elliott Date: Thu Aug 8 01:28:50 2024 -0400 Merge branch 'hotfix/double-url-encoding' into hotfix/pyupgrade-hotfixes-2 [ENG-6055] Closes #10694 commit 8296391bc51881b0c0afbf593ce627dc949dcfdc Author: Andriy Sheredko Date: Fri Aug 2 16:23:52 2024 +0300 - ENG-6055 fix for double encoding files and not be able to download them commit f3c5b998c899ab324a5daec0311f636b4bffe384 Merge: d2b27f0e5e 2070b6e6f7 Author: Fitz Elliott Date: Thu Aug 8 01:24:01 2024 -0400 Merge branch 'hotfix/dep-bumps' into hotfix/pyupgrade-hotfixes-2 * Bump deps for django & werkzeug commit 2070b6e6f76533549a7f04cb84bc07042f21ba0a Author: Fitz Elliott Date: Fri Aug 2 21:30:52 2024 -0400 make gha workflow use pyproject.toml commit c5c0c8e01dd14cadffe373a38530ab6d907d9a6f Author: Fitz Elliott Date: Fri Aug 2 21:20:39 2024 -0400 remove old requirements files & annotate poetry deps commit c9b21179791625d9ea581ca349c233e5d564fb0a Author: Fitz Elliott Date: Fri Aug 2 20:23:49 2024 -0400 bump werkzeug dep commit c5fd2f38c6d8d5dafa0ff7ccbe5e4bbe1a5c54f6 Author: Fitz Elliott Date: Fri Aug 2 20:21:45 2024 -0400 bump django dep commit 0e4950e0f2d8c3f69356529c38578d11a2e793d5 Author: Fitz Elliott Date: Fri Aug 2 20:19:39 2024 -0400 update latent transitive deps --- .github/workflows/test-build.yml | 2 +- addons/bitbucket/requirements.txt | 1 - addons/boa/requirements.txt | 5 - addons/box/requirements.txt | 1 - addons/dataverse/requirements.txt | 3 - addons/dropbox/requirements.txt | 1 - addons/figshare/requirements.txt | 1 - addons/github/requirements.txt | 3 - addons/gitlab/requirements.txt | 1 - addons/mendeley/requirements.txt | 2 - addons/onedrive/requirements.txt | 0 addons/owncloud/requirements.txt | 2 - addons/s3/requirements.txt | 1 - addons/twofactor/requirements.txt | 1 - addons/wiki/requirements.txt | 1 - addons/zotero/requirements.txt | 1 - api/base/utils.py | 4 +- poetry.lock | 783 ++++++++++++++++-------------- pyproject.toml | 56 ++- requirements.txt | 107 ---- requirements/dev.txt | 38 -- requirements/release.txt | 8 - 22 files changed, 462 insertions(+), 560 deletions(-) delete mode 100644 addons/bitbucket/requirements.txt delete mode 100644 addons/boa/requirements.txt delete mode 100644 addons/box/requirements.txt delete mode 100644 addons/dataverse/requirements.txt delete mode 100644 addons/dropbox/requirements.txt delete mode 100644 addons/figshare/requirements.txt delete mode 100644 addons/github/requirements.txt delete mode 100644 addons/gitlab/requirements.txt delete mode 100644 addons/mendeley/requirements.txt delete mode 100644 addons/onedrive/requirements.txt delete mode 100644 addons/owncloud/requirements.txt delete mode 100644 addons/s3/requirements.txt delete mode 100644 addons/twofactor/requirements.txt delete mode 100644 addons/wiki/requirements.txt delete mode 100644 addons/zotero/requirements.txt delete mode 100644 requirements.txt delete mode 100644 requirements/dev.txt delete mode 100644 requirements/release.txt diff --git a/.github/workflows/test-build.yml b/.github/workflows/test-build.yml index c6200373fe1..7fe875888d9 100644 --- a/.github/workflows/test-build.yml +++ b/.github/workflows/test-build.yml @@ -21,7 +21,7 @@ jobs: uses: actions/cache@v2 with: path: ~/.cache - key: reqs_${{ hashFiles('**/requirements.txt') }} + key: reqs_${{ hashFiles('**/pyproject.toml') }} restore-keys: reqs - run: | mkdir -p ~/.cache/downloads diff --git a/addons/bitbucket/requirements.txt b/addons/bitbucket/requirements.txt deleted file mode 100644 index e1eb62f260f..00000000000 --- a/addons/bitbucket/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -# no requirements diff --git a/addons/boa/requirements.txt b/addons/boa/requirements.txt deleted file mode 100644 index da5a1c65b02..00000000000 --- a/addons/boa/requirements.txt +++ /dev/null @@ -1,5 +0,0 @@ -# Requirements for the boa add-on -boa-api==0.1.14 - -# Requirements for running asyncio in celery, using 3.4.1 for Python 3.6 compatibility -asgiref==3.7.2 diff --git a/addons/box/requirements.txt b/addons/box/requirements.txt deleted file mode 100644 index c429a356fb2..00000000000 --- a/addons/box/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -boxsdk==3.9.2 diff --git a/addons/dataverse/requirements.txt b/addons/dataverse/requirements.txt deleted file mode 100644 index 13c09613bda..00000000000 --- a/addons/dataverse/requirements.txt +++ /dev/null @@ -1,3 +0,0 @@ -# Allow for optional timeout parameter. -# https://github.com/IQSS/dataverse-client-python/pull/27 -git+https://github.com/CenterForOpenScience/dataverse-client-python.git@2b3827578048e6df3818f82381c7ea9a2395e526 # branch is feature/dv-client-updates diff --git a/addons/dropbox/requirements.txt b/addons/dropbox/requirements.txt deleted file mode 100644 index b6470418537..00000000000 --- a/addons/dropbox/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -dropbox==11.36.2 diff --git a/addons/figshare/requirements.txt b/addons/figshare/requirements.txt deleted file mode 100644 index 8b137891791..00000000000 --- a/addons/figshare/requirements.txt +++ /dev/null @@ -1 +0,0 @@ - diff --git a/addons/github/requirements.txt b/addons/github/requirements.txt deleted file mode 100644 index f7c57e651e9..00000000000 --- a/addons/github/requirements.txt +++ /dev/null @@ -1,3 +0,0 @@ -cachecontrol==0.14.0 -github3.py==4.0.1 -uritemplate==4.1.1 diff --git a/addons/gitlab/requirements.txt b/addons/gitlab/requirements.txt deleted file mode 100644 index 2edb928a210..00000000000 --- a/addons/gitlab/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -python-gitlab==4.4.0 diff --git a/addons/mendeley/requirements.txt b/addons/mendeley/requirements.txt deleted file mode 100644 index 094445ba370..00000000000 --- a/addons/mendeley/requirements.txt +++ /dev/null @@ -1,2 +0,0 @@ -# up-to-date with mendeley's master + add folder support and future dep updates -git+https://github.com/CenterForOpenScience/mendeley-python-sdk.git@be8a811fa6c3b105d9f5c656cabb6b1ba855ed5b # branch is feature/osf-dep-updates diff --git a/addons/onedrive/requirements.txt b/addons/onedrive/requirements.txt deleted file mode 100644 index e69de29bb2d..00000000000 diff --git a/addons/owncloud/requirements.txt b/addons/owncloud/requirements.txt deleted file mode 100644 index 91497da541b..00000000000 --- a/addons/owncloud/requirements.txt +++ /dev/null @@ -1,2 +0,0 @@ -# Requirements for the owncloud add-on -pyocclient==0.6.0 diff --git a/addons/s3/requirements.txt b/addons/s3/requirements.txt deleted file mode 100644 index 79406d53dd1..00000000000 --- a/addons/s3/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -boto3==1.34.60 diff --git a/addons/twofactor/requirements.txt b/addons/twofactor/requirements.txt deleted file mode 100644 index f0df16c6611..00000000000 --- a/addons/twofactor/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -pyotp==2.9.0 \ No newline at end of file diff --git a/addons/wiki/requirements.txt b/addons/wiki/requirements.txt deleted file mode 100644 index aefa4d0d357..00000000000 --- a/addons/wiki/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -pymongo==4.6.3 diff --git a/addons/zotero/requirements.txt b/addons/zotero/requirements.txt deleted file mode 100644 index 57f831d845f..00000000000 --- a/addons/zotero/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -Pyzotero==1.5.18 diff --git a/api/base/utils.py b/api/base/utils.py index fa1c66e7250..9e0dcbc7e8c 100644 --- a/api/base/utils.py +++ b/api/base/utils.py @@ -1,5 +1,5 @@ from furl import furl -from urllib.parse import urlunsplit, urlsplit, parse_qs, urlencode, quote +from urllib.parse import urlunsplit, urlsplit, parse_qs, urlencode from packaging.version import Version from hashids import Hashids @@ -236,7 +236,7 @@ def waterbutler_api_url_for(node_id, provider, path='/', _internal=False, base_u # NOTE: furl encoding to be verified later url = furl(website_settings.WATERBUTLER_INTERNAL_URL if _internal else (base_url or website_settings.WATERBUTLER_URL)) segments = ['v1', 'resources', node_id, 'providers', provider] + path.split('/')[1:] - url.add(path=[quote(x) for x in segments]) + url.add(path=segments) url.args.update(kwargs) return url.url diff --git a/poetry.lock b/poetry.lock index 4fefc57a6b2..df2d3af5e08 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,91 +1,103 @@ # This file is automatically @generated by Poetry 1.8.0 and should not be changed by hand. 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b/pyproject.toml @@ -11,7 +11,7 @@ packages = [{include = "osf"}] python = "^3.12" wheel = "0.42.0" invoke = "2.2.0" -Werkzeug = "3.0.1" +Werkzeug = "3.0.3" Flask = "3.0.2" Mako = "1.3.2" Markdown = "3.5.2" @@ -55,8 +55,9 @@ oauthlib = "3.2.2" requests-oauthlib = "1.3.1" sentry-sdk = {version= "2.2.0", extras = ["django", "flask", "celery"]} django-redis = "5.4.0" + # API requirements -Django = "4.2.13" +Django = "4.2.15" djangorestframework = "3.15.1" django-cors-headers = "4.3.1" djangorestframework-bulk = "0.2.1" @@ -69,16 +70,18 @@ django-timezone-field = "6.1.0" # pin to delay untested major version bump pyjwe = "1.0.0" # Required by pyjwe and ndg-httpsclient cryptography = "42.0.5" -#rpds-py==0.18.0 jsonschema = "4.21.1" django-guardian = "2.4.0" + # Admin requirements +# fork to generate old webpack stats format so we don't have to upgrade admin's webpack django-webpack-loader = {git = "https://github.com/CenterForOpenScience/django-webpack-loader.git", rev = "af8438c2da909ec9f2188a6c07c9d2caad0f7e93"} # branch is feature/v1-webpack-stats django-sendgrid-v5 = "1.2.3" # metadata says python 3.10 not supported, but tests pass -# Analytics requirements +# Analytics requirement keen = "0.7.0" geoip2 = "4.7.0" + # OSF models django-typed-models = "0.14.0" django-storages = "1.14.3" @@ -86,21 +89,29 @@ google-cloud-storage = "2.16.0" # dependency of django-storages, hard-pin to ve django-dirtyfields = "1.9.2" django-extensions = "3.2.3" psycopg2 = "2.9.9" + # Reviews requirements transitions = "0.8.11" + # identifiers datacite = "1.1.3" + # metadata rdflib = "7.0.0" +packaging = "^24.0" + colorlog = "6.8.2" + # Metrics +# fork to pin installed version of elasticsearch-dsl django-elasticsearch-metrics = {git ="https://github.com/CenterForOpenScience/django-elasticsearch-metrics.git", rev = "f5b9312914154e213aa01731e934c593e3434269"} # branch is feature/pin-esdsl + # Impact Metrics CSV Export djangorestframework-csv = "3.0.2" gevent = "24.2.1" -packaging = "^24.0" [tool.poetry.group.dev.dependencies] +# Requirements that are used in the development environment only pytest = "7.4.4" pytest-socket = "0.7.0" pytest-xdist = "3.5.0" @@ -136,33 +147,52 @@ nplusone = "1.0.0" django-silk = "5.1.0" [tool.poetry.group.addons.dependencies] -# Requirements for the boa add-on +## boa boa-api = "0.1.14" - -# Requirements for running asyncio in celery, using 3.4.1 for Python 3.6 compatibility +# Requirements for running asyncio in celery asgiref = "3.7.2" + +## box boxsdk = "3.9.2" -# Allow for optional timeout parameter. -# https://github.com/IQSS/dataverse-client-python/pull/27 + +## dataverse +# new features & dependency updates dataverse = {git = "https://github.com/CenterForOpenScience/dataverse-client-python.git", rev="2b3827578048e6df3818f82381c7ea9a2395e526"} # branch is feature/dv-client-updates + +## dropbox dropbox = "11.36.2" +## github cachecontrol = "0.14.0" "github3.py" = "4.0.1" uritemplate = "4.1.1" + +## gitlab python-gitlab = "4.4.0" + +## mendeley # up-to-date with mendeley's master + add folder support and future dep updates mendeley = {git = "https://github.com/CenterForOpenScience/mendeley-python-sdk.git", rev="be8a811fa6c3b105d9f5c656cabb6b1ba855ed5b"} # branch is feature/osf-dep-updates -# Requirements for the owncloud add-on + +## owncloud pyocclient = "0.6.0" + +## s3 boto3 = "1.34.60" + +## twofactor pyotp = "2.9.0" + +## wiki +# needs pymongo, but already installed in deps +# was 4.6.3 in wiki requirements, but older version seems to work + +## zotero Pyzotero = "1.5.18" [tool.poetry.group.release.dependencies] -# newrelic APM agent +# Requirements to be installed on server deployments newrelic = "9.7.1" -# uwsgi uwsgi = "2.0.24" diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 7fb762e01b0..00000000000 --- a/requirements.txt +++ /dev/null @@ -1,107 +0,0 @@ -# Base requirements for running the OSF. -# NOTE: This does not include addon, development or release requirements. -# NOTE: When updating pinned version, you may also need to update constraints.txt -# To install addon requirements: inv requirements --addons -# To install dev requirements: inv requirements --dev -# To install release requirements: inv requirements --release -wheel==0.42.0 -invoke==2.2.0 -Werkzeug==3.0.1 -Flask==3.0.2 -Mako==1.3.2 -Markdown==3.5.2 -WTForms==3.1.2 -celery==5.3.6 -kombu==5.3.5 -itsdangerous==2.1.2 -lxml==5.1.0 -mailchimp3==3.0.21 -nameparser==1.1.3 -bcrypt==4.1.2 -python-dateutil==2.9.0 -pytz==2024.1 -bleach==6.1.0 -bleach[css]==6.1.0 -pillow==10.2.0 -Markupsafe==2.1.5 -blinker==1.7.0 -furl==2.1.3 -elasticsearch2==2.5.1 -elasticsearch==6.8.2 # max version to support elasticsearch6 -elasticsearch-dsl==6.4.0 # max version to support elasticsearch6 -elastic-transport==8.13.0 -google-api-python-client==2.123.0 -google-auth==2.29.0 -Babel==2.14.0 -citeproc-py==0.6.0 -boto3==1.34.60 -django-waffle==4.1.0 -pymongo[ocsp]==3.13.0 # install to get bson 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