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integrate FR match similarity scores #27

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dosumis opened this issue Sep 29, 2024 · 1 comment
Open
3 tasks

integrate FR match similarity scores #27

dosumis opened this issue Sep 29, 2024 · 1 comment
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@dosumis
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dosumis commented Sep 29, 2024

Richard's group has similarity score mappings between LungMap and HCLA lung datasets. We should load these in ASAP. This will be precedent for loading FRmatch or other similarity scores more generally. The aim should be to harden this so that others Richard/Renee can load directly. In future we should aim to load in remapping from integration networks.

We should Use CellMark repo for this.

draft schema:

(c1:Cell_cluster)-[:has_similar_transcriptomic_profile { confidence: 0.8, method: "FrMatch", method_reference: "DOI:1234.5678/a"}]->(c2:Cell_cluster)

  • Get Lung FrMatch data --> CellMark repo - contact Richard's team.
  • Design templates for loading transcriptomic similarity score
  • Add as component in CellMark
@dosumis
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dosumis commented Sep 29, 2024

CC @scheuerm

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