requirements.txt

# This file lists requirements needed to run the executables shipped
# by ga4gh/ga4gh-server.
#
# These requirements are read directly into setup.py, so specify them
# in the order that they should be in in setup.py

### This section is for dependencies of the libraries ###
# these libraries are the set listed by pipdeptree -f -w
# that are dependencies of libraries listed in the next section

# Adding the constraints.txt allows you to choose a specific 
# way to resolve our internal dependencies. During development,
# the constraints file will point at the current master branch 
# of the respective module.
candig-common==1.0.0
candig-schemas==1.1.0

Werkzeug==0.15.5
MarkupSafe==1.1.1
itsdangerous==1.1.0
six==1.14.0
pycryptodome==3.9.7
Mako==1.1.1
Beaker==1.11.0
funcsigs==1.0.2
alabaster==0.7.12
pyasn1==0.4.8
pyasn1-modules==0.2.8
# enum34==1.1.2
ipaddress==1.0.23
cffi==1.11.5
pycparser==2.19
Jinja2==2.11.3
future==0.15.2
pyjwkest==1.4.2
PyJWT==1.7.1
peewee==3.13.1
gunicorn==19.9.0
pandas==1.0.1
tabulate==0.8.7 
pronto==1.1.2

### This section is for the actual libraries ###
# these libraries are imported in code that can be reached via
# an executable that we ship

# Flask must come after all other requirements that have "flask" as a
# prefix due to a setuptools bug.
Flask-Cors==3.0.9
Flask==1.1.1
protobuf==3.3.0
humanize==0.5.1
pysam==0.9.1.4
requests==2.23.0
requests-futures==1.0.0
oic==1.2.1
pyOpenSSL==18.0.0
lxml==4.6.5
pyBigWig==0.3.17

# We need sphinx-argparse to build on readthedocs.
sphinx-argparse

# G2P uses a ttl backend
RDFLib==4.2.2

# Differential privacy lib requires numpy
numpy