From a9bd705af60cb4fea95f11b1aae7755b786d2509 Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Tue, 17 Oct 2023 18:42:16 -0400
Subject: [PATCH] feat: use conda to manage exact package versions

---
 docker/spacesavers2/Dockerfile      | 10 ++++------
 docker/spacesavers2/environment.txt | 26 ++++++++++++++++++++++++++
 docker/spacesavers2/r-packages.txt  | 23 -----------------------
 3 files changed, 30 insertions(+), 29 deletions(-)
 create mode 100644 docker/spacesavers2/environment.txt
 delete mode 100644 docker/spacesavers2/r-packages.txt

diff --git a/docker/spacesavers2/Dockerfile b/docker/spacesavers2/Dockerfile
index 35acfaf..ea4f04b 100644
--- a/docker/spacesavers2/Dockerfile
+++ b/docker/spacesavers2/Dockerfile
@@ -8,12 +8,10 @@ ENV BUILD_TAG=${BUILD_TAG}
 ARG REPONAME="000000"
 ENV REPONAME=${REPONAME}
 
-# install pandoc
-RUN mamba install pandoc
-
-# install R packages
-COPY r-packages.txt /data2/
-RUN R -e 'install.packages(readLines("r-packages.txt"), repos="http://cran.us.r-project.org")'
+# install pandoc & R packages
+COPY environment.txt /data/2
+RUN mamba install -c conda-forge -c r --file environment.txt
+ENV R_LIBS_USER=/opt2/conda/lib/R/library/
 
 # install quarto
 ENV QUARTO_VERSION="1.3.450"
diff --git a/docker/spacesavers2/environment.txt b/docker/spacesavers2/environment.txt
new file mode 100644
index 0000000..30dbd8f
--- /dev/null
+++ b/docker/spacesavers2/environment.txt
@@ -0,0 +1,26 @@
+quarto
+pandoc
+r-base=4.3.1
+r-DT
+r-RColorBrewer
+r-bslib=0.5.1
+r-crosstalk
+r-downlit
+r-dplyr
+r-ggplot2
+r-glue
+r-here
+r-janitor
+r-knitr
+r-lubridate
+r-plotly
+r-purrr
+r-readr
+r-rlang
+r-rmarkdown
+r-scales
+r-shiny
+r-stringr
+r-tibble
+r-tidyr
+r-xml2
diff --git a/docker/spacesavers2/r-packages.txt b/docker/spacesavers2/r-packages.txt
deleted file mode 100644
index 2a3d4cd..0000000
--- a/docker/spacesavers2/r-packages.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-DT
-RColorBrewer
-bslib
-downlit
-dplyr
-ggplot2
-glue
-here
-janitor
-knitr
-lubridate
-plotly
-purrr
-readr
-rlang
-rmarkdown
-scales
-shiny
-stringr
-thematic
-tibble
-tidyr
-xml2