feat: create bam_to_fastq process #14
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Changes
New module custom/bam_to_fastq to convert BAM files to fastq. Uses samtools if single end or picard if paired end.
Issues
towards CCBR/CHAMPAGNE#117
PR Checklist
(
Strikethroughany points that are not applicable.)CHANGELOG.mdwith a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/