diff --git a/CHANGELOG.md b/CHANGELOG.md index 0e6b096..7006129 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,5 +7,6 @@ - custom/bam_to_fastq (#14) - cutadapt (#11) - khmer/uniquekmers (#7) +- picard/samtofastq (#21) - samtools/filteraligned (#13,#20) - also runs samtools sort & outputs index in bai format. (#12) diff --git a/README.md b/README.md index d0f936f..d43ea17 100644 --- a/README.md +++ b/README.md @@ -38,5 +38,6 @@ Many of the modules and subworkflows in this project reuse and adapt code from [ In those cases, credit is noted in the `meta.yml` file of the module/subworkflow and also listed here: - [bwa](modules/CCBR/bwa) adapts the [nf-core bwa module](https://github.com/nf-core/chipseq/tree/51eba00b32885c4d0bec60db3cb0a45eb61e34c5/modules/nf-core/modules/bwa) -- [cutadapt](modules/CCBR/cutadapt) adapts the [nf-core cutadapt module](https://github.com/nf-core/modules/tree/master/modules/nf-core/cutadapt) +- [cutadapt](modules/CCBR/cutadapt) adapts the [nf-core cutadapt module](https://github.com/nf-core/modules/tree/ef007b1ce5316506b8c27c3e7a62482409c6153c/modules/nf-core/cutadapt) - [khmer](modules/CCBR/khmer) adapts the [nf-core khmer module](https://github.com/nf-core/modules/tree/b48a1efc8e067502e1a9bafbac788c1e0abdfc6a/modules/nf-core/khmer) +- [picard/samtofastq] adapts the [nf-core gatk4 samtofastq module](https://github.com/nf-core/modules/tree/ef007b1ce5316506b8c27c3e7a62482409c6153c/modules/nf-core/gatk4/samtofastq) diff --git a/modules/CCBR/picard/samtofastq/meta.yml b/modules/CCBR/picard/samtofastq/meta.yml index 4d4b8e3..b99b4c0 100644 --- a/modules/CCBR/picard/samtofastq/meta.yml +++ b/modules/CCBR/picard/samtofastq/meta.yml @@ -1,5 +1,5 @@ name: "picard_samtofastq" -description: Converts a BAM or SAM file to fastq. +description: Converts a BAM or SAM file to fastq. Adapted from the nf-core gatk4 samtofastq module. keywords: - fastq - bam