From 7da422b759707d56119e4646c344eaff3d22642b Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Fri, 20 Oct 2023 16:06:54 -0400
Subject: [PATCH] test: fix tags

---
 subworkflows/CCBR/filter_blacklist/main.nf     |  2 +-
 .../subworkflows/CCBR/filter_blacklist/main.nf |  2 +-
 .../CCBR/filter_blacklist/test.yml             | 18 ++++++++++++++++++
 3 files changed, 20 insertions(+), 2 deletions(-)

diff --git a/subworkflows/CCBR/filter_blacklist/main.nf b/subworkflows/CCBR/filter_blacklist/main.nf
index ab95bb3..80ee8ec 100644
--- a/subworkflows/CCBR/filter_blacklist/main.nf
+++ b/subworkflows/CCBR/filter_blacklist/main.nf
@@ -1,7 +1,7 @@
 
 
 include { BWA_MEM        } from '../../../../modules/ccbr/bwa/mem'
-include { FILTER_ALIGNED } from '../../../../modules/ccbr/samtools/filter_aligned'
+include { FILTER_ALIGNED } from '../../../../modules/ccbr/samtools/filteraligned'
 include { BAM2FASTQ   } from '../../../../modules/ccbr/custom/bam2fastq'
 
 workflow FILTER_BLACKLIST {
diff --git a/tests/subworkflows/CCBR/filter_blacklist/main.nf b/tests/subworkflows/CCBR/filter_blacklist/main.nf
index 05d4dc7..e2b8493 100644
--- a/tests/subworkflows/CCBR/filter_blacklist/main.nf
+++ b/tests/subworkflows/CCBR/filter_blacklist/main.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl = 2
 
 include { BWA_INDEX        } from "../../../../../modules/CCBR/bwa/index/main"
-include { FILTER_BLACKLIST } from "../../../../../subworkflows/CCBR/custom/filter_blacklist/main"
+include { FILTER_BLACKLIST } from "../../../../../subworkflows/CCBR/filter_blacklist/main"
 
 
 workflow test_filter_blacklist_single {
diff --git a/tests/subworkflows/CCBR/filter_blacklist/test.yml b/tests/subworkflows/CCBR/filter_blacklist/test.yml
index 078b9b2..e1db1c4 100644
--- a/tests/subworkflows/CCBR/filter_blacklist/test.yml
+++ b/tests/subworkflows/CCBR/filter_blacklist/test.yml
@@ -2,12 +2,24 @@
   command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_single -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config
   tags:
     - subworkflows/filter_blacklist
+    - custom/bam2fastq
+    - custom
+    - samtools/filteraligned
+    - samtools
+    - bwa/mem
+    - bwa
   files:
     - path: output/bam2fastq/test.R1.fastq.gz
 - name: filter_blacklist test_filter_blacklist_paired
   command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_paired -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config
   tags:
     - subworkflows/filter_blacklist
+    - custom/bam2fastq
+    - custom
+    - samtools/filteraligned
+    - samtools
+    - bwa/mem
+    - bwa
   files:
     - path: output/bam2fastq/test.R1.fastq.gz
     - path: output/bam2fastq/test.R2.fastq.gz
@@ -15,5 +27,11 @@
   command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_single -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config -stub
   tags:
     - subworkflows/filter_blacklist
+    - custom/bam2fastq
+    - custom
+    - samtools/filteraligned
+    - samtools
+    - bwa/mem
+    - bwa
   files:
     - path: output/bam2fastq/test.R1.fastq.gz