diff --git a/tests/subworkflows/CCBR/custom/filter_blacklist/test.yml b/tests/subworkflows/CCBR/custom/filter_blacklist/test.yml deleted file mode 100644 index a13d058..0000000 --- a/tests/subworkflows/CCBR/custom/filter_blacklist/test.yml +++ /dev/null @@ -1,13 +0,0 @@ -- name: filter_blacklist test_filter_blacklist_single - command: nextflow run ./tests/subworkflows/CCBR/custom/filter_blacklist/main.nf -entry test_filter_blacklist_single -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config - files: - - path: output/bam/test.R1.fastq.gz -- name: filter_blacklist test_filter_blacklist_paired - command: nextflow run ./tests/subworkflows/CCBR/custom/filter_blacklist/main.nf -entry test_filter_blacklist_paired -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config - files: - - path: output/bam/test.R1.fastq.gz - - path: output/bam/test.R2.fastq.gz -- name: filter_blacklist test_filter_blacklist_single stub - command: nextflow run ./tests/subworkflows/CCBR/custom/filter_blacklist/main.nf -entry test_filter_blacklist_single -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config -stub - files: - - path: output/bam/test.R1.fastq.gz diff --git a/tests/subworkflows/CCBR/custom/filter_blacklist/main.nf b/tests/subworkflows/CCBR/filter_blacklist/main.nf similarity index 100% rename from tests/subworkflows/CCBR/custom/filter_blacklist/main.nf rename to tests/subworkflows/CCBR/filter_blacklist/main.nf diff --git a/tests/subworkflows/CCBR/custom/filter_blacklist/nextflow.config b/tests/subworkflows/CCBR/filter_blacklist/nextflow.config similarity index 100% rename from tests/subworkflows/CCBR/custom/filter_blacklist/nextflow.config rename to tests/subworkflows/CCBR/filter_blacklist/nextflow.config diff --git a/tests/subworkflows/CCBR/filter_blacklist/test.yml b/tests/subworkflows/CCBR/filter_blacklist/test.yml new file mode 100644 index 0000000..078b9b2 --- /dev/null +++ b/tests/subworkflows/CCBR/filter_blacklist/test.yml @@ -0,0 +1,19 @@ +- name: filter_blacklist test_filter_blacklist_single + command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_single -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config + tags: + - subworkflows/filter_blacklist + files: + - path: output/bam2fastq/test.R1.fastq.gz +- name: filter_blacklist test_filter_blacklist_paired + command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_paired -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config + tags: + - subworkflows/filter_blacklist + files: + - path: output/bam2fastq/test.R1.fastq.gz + - path: output/bam2fastq/test.R2.fastq.gz +- name: filter_blacklist test_filter_blacklist_single stub + command: nextflow run ./tests/subworkflows/CCBR/filter_blacklist/main.nf -entry test_filter_blacklist_single -c tests/config/nextflow.config -c tests/config/test_data_CCBR.config -stub + tags: + - subworkflows/filter_blacklist + files: + - path: output/bam2fastq/test.R1.fastq.gz diff --git a/tests/subworkflows/CCBR/custom/filter_blacklist/test_filter_blacklist.py b/tests/subworkflows/CCBR/filter_blacklist/test_filter_blacklist.py similarity index 100% rename from tests/subworkflows/CCBR/custom/filter_blacklist/test_filter_blacklist.py rename to tests/subworkflows/CCBR/filter_blacklist/test_filter_blacklist.py