From 450fdb340ce0564c0544a40b3f1fd5c95234d0f7 Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Wed, 1 Nov 2023 13:26:09 -0400
Subject: [PATCH] test: create test.yml for custom/countfastq

---
 tests/modules/CCBR/custom/countfastq/test.yml | 44 +++++++++++++++++++
 1 file changed, 44 insertions(+)
 create mode 100644 tests/modules/CCBR/custom/countfastq/test.yml

diff --git a/tests/modules/CCBR/custom/countfastq/test.yml b/tests/modules/CCBR/custom/countfastq/test.yml
new file mode 100644
index 0000000..a852229
--- /dev/null
+++ b/tests/modules/CCBR/custom/countfastq/test.yml
@@ -0,0 +1,44 @@
+- name: custom countfastq test_countfastq_single
+  command: nextflow run ./tests/modules/CCBR/custom/countfastq -entry test_countfastq_single -c ./tests/config/nextflow.config
+  tags:
+    - custom
+    - custom/countfastq
+  files:
+    - path: output/custom/test.count.txt
+      md5sum: f899139df5e1059396431415e770c6dd
+      contains:
+        - "100"
+    - path: output/custom/versions.yml
+
+- name: custom countfastq test_countfastq_paired
+  command: nextflow run ./tests/modules/CCBR/custom/countfastq -entry test_countfastq_paired -c ./tests/config/nextflow.config
+  tags:
+    - custom
+    - custom/countfastq
+  files:
+    - path: output/custom/test.count.txt
+      md5sum: 3644a684f98ea8fe223c713b77189a77
+      contains:
+        - "200"
+    - path: output/custom/versions.yml
+
+- name: custom countfastq test_countfastq_blank
+  command: nextflow run ./tests/modules/CCBR/custom/countfastq -entry test_countfastq_blank -c ./tests/config/nextflow.config
+  tags:
+    - custom
+    - custom/countfastq
+  files:
+    - path: output/custom/test.count.txt
+      md5sum: cfcd208495d565ef66e7dff9f98764da
+      contains:
+        - "0"
+    - path: output/custom/versions.yml
+
+- name: custom countfastq test_countfastq_single stub
+  command: nextflow run ./tests/modules/CCBR/custom/countfastq -entry test_countfastq_single -c ./tests/config/nextflow.config -stub
+  tags:
+    - custom
+    - custom/countfastq
+  files:
+    - path: output/custom/test.count.txt
+    - path: output/custom/versions.yml