diff --git a/CHANGELOG.md b/CHANGELOG.md index 96fec04..e557bba 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,15 +1,22 @@ -## development version +## XAVIER 3.0.3 -- Create `CITATION.cff` to describe how to cite XAVIER. (#68, @kelly-sovacool) -- Provide a more helpful error message when `xavier` is called with no arguments. (#75, @kelly-sovacool) -- Minor documentation improvements. (#78, @kelly-sovacool) +- Bug fixes: + - Use `--rerun--incomplete` Snakemake argument and fix bed. (#66, @dnousome) + - Fix final somatic merge (#70, @dnousome) + - Fix Varscan/Mutect2 output to keep Tumor Normal ordering. (#84, @dnousome) + - Reduce memory allocation. (#86, @samarth8392) + - Provide a more helpful error message when `xavier` is called with no arguments. (#75, @kelly-sovacool) +- Documentation improvements: (#78, @kelly-sovacool) + - Document the release process for developers. (#63, @kelly-sovacool) + - Create `CITATION.cff` to describe how to cite XAVIER. (#68, @kelly-sovacool) +- Sync GitHub Actions with other CCBR pipelines. (#65, #67, @kelly-sovacool; #73, @kopardev) -## v3.0.2 +## XAVIER 3.0.2 - Documentation updates for GUI and other genome references - Additional IUPAC changes to play nice with GATK tools (non ACGTN codes convert to N) -## v3.0.1 +## XAVIER 3.0.1 Hotfixes for all! @@ -17,7 +24,7 @@ Hotfixes for all! - Fixed spooker/runner calls for run info - Fixed vcf2maf which missed the Intersection of calls -## v3.0.0 +## XAVIER 3.0.0 - added [FRCE](https://ncifrederick.cancer.gov/staff/frce/welcome) support. - adding `$triggeroptions` to _snakemake_ cli. diff --git a/CITATION.cff b/CITATION.cff index 1f9c9c8..e8fb07c 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -32,5 +32,5 @@ url: https://ccbr.github.io/XAVIER/ repository-code: https://github.com/CCBR/XAVIER license: MIT type: software -version: 3.0.2 -date-released: 2023-12-19 +version: 3.0.3 +date-released: 2024-07-11 diff --git a/src/__init__.py b/src/__init__.py index 5c85348..b9a3aea 100644 --- a/src/__init__.py +++ b/src/__init__.py @@ -7,5 +7,5 @@ # across python2 and python3. sys.path.append(os.path.dirname(os.path.realpath(__file__))) -# Ground source of truth for version information -version = "v3.0.2-dev" +# Single source for version information +version = "3.0.3"