bindetect - OpenBLAS blas_thread_init: pthread_create failed: Resource temporarily unavailable

[kelly-sovacool]

[Mon Aug 19 19:32:28 2024]
Job 0: Running bindetect for dox_04_hr_vs_dmso_04_hr
Reason: Missing output files: /vf/users/netterfieldts/MIT_sequencing_data/CCBR-1346/ccbr_tobias_dev/TFBS_dox_04_hr_
vs_dmso_04_hr/bindetect_figures.pdf


        c1=$(echo dox_04_hr_vs_dmso_04_hr | awk -F"_vs_" '{print $1}')
        c2=$(echo dox_04_hr_vs_dmso_04_hr | awk -F"_vs_" '{print $2}')
        outdir=$(dirname "/vf/users/netterfieldts/MIT_sequencing_data/CCBR-1346/ccbr_tobias_dev/TFBS_dox_04_hr_vs_d
mso_04_hr/bindetect_figures.pdf")
        TOBIAS BINDetect             --motifs /gpfs/gsfs10/users/CCBR_Pipeliner/Pipelines/CCBR_tobias/sovacool-dev-
tobias/resources/HOCOMOCOv11_HUMAN_core_motifs.txt             --signals /vf/users/netterfieldts/MIT_sequencing_dat
a/CCBR-1346/ccbr_tobias_dev/footprinting/dox_04_hr_footprints.bw /vf/users/netterfieldts/MIT_sequencing_data/CCBR-1
346/ccbr_tobias_dev/footprinting/dmso_04_hr_footprints.bw             --genome /data/netterfieldts/MIT_sequencing_d
ata/CCBR-1346/data/refgenie/hg38.fa             --peaks /vf/users/netterfieldts/MIT_sequencing_data/CCBR-1346/ccbr_
tobias_dev/peaks/annotated_peaks             --peak-header /vf/users/netterfieldts/MIT_sequencing_data/CCBR-1346/cc
br_tobias_dev/peaks/annotated_peaks_header             --cores 56             --cond-names $c1 $c2             --ou
tdir $outdir
        sleep 600

Activating singularity image /vf/users/netterfieldts/MIT_sequencing_data/CCBR-1346/ccbr_tobias_dev/.snakemake/singu
larity/fde1dd6f8d47b4e55638534e5910127c.simg
OpenBLAS blas_thread_init: pthread_create failed for thread 16 of 56: Resource temporarily unavailable
OpenBLAS blas_thread_init: RLIMIT_NPROC 1024 current, 2061588 max
OpenBLAS blas_thread_init: pthread_create failed for thread 17 of 56: Resource temporarily unavailable
OpenBLAS blas_thread_init: RLIMIT_NPROC 1024 current, 2061588 max
OpenBLAS blas_thread_init: pthread_create failed for thread 18 of 56: Resource temporarily unavailable
OpenBLAS blas_thread_init: RLIMIT_NPROC 1024 current, 2061588 max
OpenBLAS blas_thread_init: pthread_create failed for thread 19 of 56: Resource temporarily unavailable
OpenBLAS blas_thread_init: RLIMIT_NPROC 1024 current, 2061588 max

[kelly-sovacool]

possible solutions: https://stackoverflow.com/questions/52026652/openblas-blas-thread-init-pthread-create-resource-temporarily-unavailable