error in get_contact_sites endpoint

[ceesem]

Using the get_contact_sites endpoint throws a 500 error due to the keyword argument connected_edges in ChunkedGraph.get_subgraph_edges that is no longer used. You can find the contact sites line here and the subgraph function definition here. It doesn't look like the same functionality is still enabled, possibly due to the differences with how edges are stores in v2 and beyond. We should either fix this or remove the endpoint.

An example and the traceback is described on CAVEconnectome/CAVEclient#166 .

[bpdanskin]

bump

[akhileshh]

Looks like this code was last edited during my refactor from v1 to v2. Since no one said anything (until now), it has stayed that way.

What is the expected behavior of get_contact_sites?

Would simply removing the keyword arg connected_edges fix the issue?

[akhileshh]

Oh, it won't. There are some other remnants like _retrieve_connectivity that don't exist in v2.

I have asked @sdorkenw to take a look.