From 449d1dafff2ca6dac8b4398b19d6b950f4a25ef6 Mon Sep 17 00:00:00 2001 From: Nick Juty <3739470+nsjuty@users.noreply.github.com> Date: Wed, 14 Feb 2024 11:52:02 +0000 Subject: [PATCH 01/11] Delete BioSample/jsonld/type/gbhBioSamples.jsonld meant to add to my fork... --- BioSample/jsonld/type/gbhBioSamples.jsonld | 733 --------------------- 1 file changed, 733 deletions(-) delete mode 100644 BioSample/jsonld/type/gbhBioSamples.jsonld diff --git a/BioSample/jsonld/type/gbhBioSamples.jsonld b/BioSample/jsonld/type/gbhBioSamples.jsonld deleted file mode 100644 index cf562064..00000000 --- a/BioSample/jsonld/type/gbhBioSamples.jsonld +++ /dev/null @@ -1,733 +0,0 @@ -{ - "@context": { - "schema": "http://schema.org/", - "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", - "rdfs": "http://www.w3.org/2000/01/rdf-schema#", - "gbhBioSample": "https://discovery.biothings.io/view/gbhBioSample/", - "bioschemas": "https://discovery.biothings.io/view/bioschemas/" - }, - "@graph": [ - { - "@id": "gbhBioSample:GbhBioSample", - "@type": "rdfs:Class", - "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Rita Monteiro and Joana Pauperio.", - "rdfs:label": "GbhBioSample", - "rdfs:subClassOf": { - "@id": "bioschemastypes:BioSample" - }, - "$validation": { - "$schema": "http://json-schema.org/draft-07/schema#", - "type": "object", - "properties": { - "dateCollected": { - "description": "The date on which the sample was collected." - }, - "datePublished": { - "description": "The date when the record of the sample will be made publicly available." - }, - "Submitter": { - "description": "The person or organization that registers the sample. " - }, - "maintainer": { - "description": "The Person or Organization who is responsible for the Sample." - }, - "contributor": { - "description": "Person or organization that contributes to the work." - }, - "longitude": { - "description": "The longitude from which the sample was originally collected. " - }, - "elevation": { - "description": "The altitude from which the sample was originally collected. " - }, - "latitude": { - "description": "The latitude from which the sample was originally collected. " - }, - "depth": { - "description": "The extent downward or inward from the surface from which the sample was originally collected. " - }, - "locationOfOrigin": { - "description": "The location from which the sample was originally collected." - }, - "dateModified": { - "description": "Date sample record was last updated." - }, - "keywords": { - "description": "Terms that capture the main subjects e.g. cancer, plant biology." - }, - "alternateIdentifier": { - "description": "An additional identifier for the same instance of the resource. " - }, - "contactPoint": { - "description": "Person or organization that can be contacted for more information or support. " - }, - "environmentalSystem": { - "description": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected." - }, - "sampleQuantity": { - "description": "A numeric value for a measurement of the size of a sample." - }, - "processingDate": { - "description": "The date the sample was processed or used in a method." - }, - "sampleState": { - "description": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid." - }, - "sampleType": { - "description": "Indicate the type of sample, e.g.fibroblasts, oocyte." - }, - "collectionMethod": { - "description": "Provide information about the conditions and methods of acquisition of samples." - }, - "sampleStorageTemperature": { - "description": "Storage condition of the sample" - }, - "sampleProcess": { - "description": "The processing technique that was applied to the sample, methods used to prepare the samples." - }, - "experimentalPurpose": { - "description": "Describe the planned or executed experimental procedures involving the samples." - }, - "instrument": { - "description": "Provide description of instruments and devices used." - }, - "grant": { - "description": "Provide grant information." - }, - "project": { - "description": "Information on the project." - }, - "relatedItem": { - "description": "Describe related items including other resources related to the samples." - }, - "isDescribedBy": { - "description": "List publications where the sample is mentioned or described." - }, - "studyTitle": { - "description": "Title of the study the samples belong to" - }, - "studyID": { - "description": "Indicate the study ID." - }, - "sampleAvailability": { - "description": "Indicate whether this resource is available for reuse." - }, - "accessConditions": { - "description": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted." - }, - "ethics": { - "description": "Indicate which ethics policies are associated with the sample." - }, - "scientificName": { - "description": "The full scientific name (order, family, subfamily, genus,specificEpithet)." - }, - "anatamoicalSystem": { - "description": "Indicate the anatomical system from which the sample is collect, e.g. circulatory, digestive, endocrine, immune and other systems." - }, - "organ": { - "description": "Indicate the organ the sample was collected from." - }, - "tissue": { - "description": "Indicate the tissue from which the sample was collected." - }, - "sex": { - "description": "The biological sex from which the sample was obtained." - }, - "developmentalStage": { - "description": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created." - }, - "relationshipType": { - "description": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont." - }, - "collector": { - "description": "The Person or Organization who collected the Sample. " - }, - "dateCreated": { - "description": "The date on which the CreativeWork was created or the item was added to a DataFeed. " - }, - "isControl": { - "description": "Indicates whether the sample is being used as a normal control, may be in combination with another sample." - }, - "itemLocation": { - "description": "Current location of the item." - }, - "locationCreated": { - "description": "The place where a sample underwent processing or creation, distinct from its original location." - }, - "associatedDisease": { - "description": "Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue." - }, - "biologicalRole": { - "description": "A role played by the BioChemEntity within a biological context." - }, - "isInvolvedInBiologicalProcess": { - "description": "Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence." - }, - "isLocatedInSubcellularLocation": { - "description": "Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence." - }, - "taxonomicRange": { - "description": "The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity." - }, - "alternateName": { - "description": "An alias for the item." - }, - "description": { - "description": "A description of the item." - }, - "identifier": { - "description": "The identifier property represents any kind of identifier for any kind of [[Thing]], such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See [background notes](/docs/datamodel.html#identifierBg) for more details.\n " - }, - "name": {}, - "sameAs": {}, - "url": { - "description": "URL of the item." - } - }, - "required": [], - "recommended": [], - "optional": [] - }, - "schemaVersion": [ - "https://schema.org/docs/releases.html#v23.0" - ] - }, - { - "@id": "gbhBioSample:dateCollected", - "@type": "rdf:Property", - "rdfs:comment": "The date on which the sample was collected.", - "rdfs:label": "dateCollected", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Date" - }, - { - "@id": "schema:DateTime" - } - ] - }, - { - "@id": "gbhBioSample:datePublished", - "@type": "rdf:Property", - "rdfs:comment": "The date when the record of the sample will be made publicly available.", - "rdfs:label": "datePublished", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Date" - }, - { - "@id": "schema:DateTime" - } - ] - }, - { - "@id": "gbhBioSample:Submitter", - "@type": "rdf:Property", - "rdfs:comment": "The person or organization that registers the sample. ", - "rdfs:label": "Submitter", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Person" - }, - { - "@id": "schema:Organization" - }, - { - "@id": "" - } - ] - }, - { - "@id": "gbhBioSample:maintainer", - "@type": "rdf:Property", - "rdfs:comment": "The Person or Organization who is responsible for the Sample.", - "rdfs:label": "maintainer", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Person" - }, - { - "@id": "schema:Organization" - } - ] - }, - { - "@id": "gbhBioSample:contributor", - "@type": "rdf:Property", - "rdfs:comment": "Person or organization that contributes to the work.", - "rdfs:label": "contributor", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Person" - }, - { - "@id": "schema:Organization" - } - ] - }, - { - "@id": "gbhBioSample:longitude", - "@type": "rdf:Property", - "rdfs:comment": "The longitude from which the sample was originally collected. ", - "rdfs:label": "longitude", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:GeoCoordinates" - } - ] - }, - { - "@id": "gbhBioSample:elevation", - "@type": "rdf:Property", - "rdfs:comment": "The altitude from which the sample was originally collected. ", - "rdfs:label": "elevation", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:GeoCoordinates" - } - ] - }, - { - "@id": "gbhBioSample:latitude", - "@type": "rdf:Property", - "rdfs:comment": "The latitude from which the sample was originally collected. ", - "rdfs:label": "latitude", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:GeoCoordinates" - } - ] - }, - { - "@id": "gbhBioSample:depth", - "@type": "rdf:Property", - "rdfs:comment": "The extent downward or inward from the surface from which the sample was originally collected. ", - "rdfs:label": "depth", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:QuantitativeValue" - } - ] - }, - { - "@id": "gbhBioSample:locationOfOrigin", - "@type": "rdf:Property", - "rdfs:comment": "The location from which the sample was originally collected.", - "rdfs:label": "locationOfOrigin", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:GeoCoordinates" - } - ] - }, - { - "@id": "gbhBioSample:dateModified", - "@type": "rdf:Property", - "rdfs:comment": "Date sample record was last updated.", - "rdfs:label": "dateModified", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Date" - }, - { - "@id": "schema:DateTime" - } - ] - }, - { - "@id": "gbhBioSample:keywords", - "@type": "rdf:Property", - "rdfs:comment": "Terms that capture the main subjects e.g. cancer, plant biology.", - "rdfs:label": "keywords", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:alternateIdentifier", - "@type": "rdf:Property", - "rdfs:comment": "An additional identifier for the same instance of the resource. ", - "rdfs:label": "alternateIdentifier", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:contactPoint", - "@type": "rdf:Property", - "rdfs:comment": "Person or organization that can be contacted for more information or support. ", - "rdfs:label": "contactPoint", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Person" - }, - { - "@id": "schema:Organization" - } - ] - }, - { - "@id": "gbhBioSample:environmentalSystem", - "@type": "rdf:Property", - "rdfs:comment": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected.", - "rdfs:label": "environmentalSystem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:sampleQuantity", - "@type": "rdf:Property", - "rdfs:comment": "A numeric value for a measurement of the size of a sample.", - "rdfs:label": "sampleQuantity", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:QuantitativeValue" - } - ] - }, - { - "@id": "gbhBioSample:processingDate", - "@type": "rdf:Property", - "rdfs:comment": "The date the sample was processed or used in a method.", - "rdfs:label": "processingDate", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Date" - }, - { - "@id": "schema:DateTime" - } - ] - }, - { - "@id": "gbhBioSample:sampleState", - "@type": "rdf:Property", - "rdfs:comment": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid.", - "rdfs:label": "sampleState", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:sampleType", - "@type": "rdf:Property", - "rdfs:comment": "Indicate the type of sample", - "rdfs:label": "sampleType", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - }, - { - "@id": "schema:URL" - } - ] - }, - { - "@id": "gbhBioSample:collectionMethod", - "@type": "rdf:Property", - "rdfs:comment": "Provide information about the conditions and methods of acquisition of samples. ", - "rdfs:label": "collectionMethod", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:sampleStorageTemperature", - "@type": "rdf:Property", - "rdfs:comment": "Storage condition of the sample.", - "rdfs:label": "sampleStorageTemperature", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:QualitativeValue" - }, - { - "@id": "" - } - ] - }, - { - "@id": "gbhBioSample:sampleProcess", - "@type": "rdf:Property", - "rdfs:comment": "The processing technique that was applied to the sample, methods used to prepare the samples.", - "rdfs:label": "sampleProcess", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:experimentalPurpose", - "@type": "rdf:Property", - "rdfs:comment": "Describe the planned or executed experimental procedures involving the samples.", - "rdfs:label": "experimentalPurpose", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:instrument", - "@type": "rdf:Property", - "rdfs:comment": "Provide description of instruments and devices used.", - "rdfs:label": "instrument", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - }, - { - "@id": "schema:URL" - } - ] - }, - { - "@id": "gbhBioSample:grant", - "@type": "rdf:Property", - "rdfs:comment": "Provide grant information.", - "rdfs:label": "grant", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Grant" - }, - { - "@id": "" - } - ] - }, - { - "@id": "gbhBioSample:project", - "@type": "rdf:Property", - "rdfs:comment": "Information on the project.", - "rdfs:label": "project", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:ResearchProject" - } - ] - }, - { - "@id": "gbhBioSample:relatedItem", - "@type": "rdf:Property", - "rdfs:comment": "Describe related items including other resources related to the samples.", - "rdfs:label": "relatedItem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Dataset" - }, - { - "@id": "schema:ImageObject" - }, - { - "@id": "schema:CreativeWork" - }, - { - "@id": "schema:Text" - }, - { - "@id": "schema:URL" - } - ] - }, - { - "@id": "gbhBioSample:isDescribedBy", - "@type": "rdf:Property", - "rdfs:comment": "List publications where the sample is mentioned or described.", - "rdfs:label": "isDescribedBy", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Article" - } - ] - }, - { - "@id": "gbhBioSample:studyTitle", - "@type": "rdf:Property", - "rdfs:comment": "Title of the study the samples belong to", - "rdfs:label": "studyTitle", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:studyID", - "@type": "rdf:Property", - "rdfs:comment": "Indicate the study ID.", - "rdfs:label": "studyID", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - }, - { - "@id": "schema:URL" - } - ] - }, - { - "@id": "gbhBioSample:sampleAvailability", - "@type": "rdf:Property", - "rdfs:comment": "Indicate whether this resource is available for reuse.", - "rdfs:label": "sampleAvailability", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Boolean" - } - ] - }, - { - "@id": "gbhBioSample:accessConditions", - "@type": "rdf:Property", - "rdfs:comment": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted.", - "rdfs:label": "accessConditions", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:ethics", - "@type": "rdf:Property", - "rdfs:comment": "Indicate which ethics policies are associated with the sample.", - "rdfs:label": "ethics", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - }, - { - "@id": "" - } - ] - }, - { - "@id": "gbhBioSample:scientificName", - "@type": "rdf:Property", - "rdfs:comment": "The full scientific name (order, family, subfamily, genus,specificEpithet).", - "rdfs:label": "scientificName", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:anatamoicalSystem", - "@type": "rdf:Property", - "rdfs:comment": "An anatomical system is a group of anatomical structures that work together to perform a certain task. Can include circulatory, digestive, endocrine, immune and other systems", - "rdfs:label": "anatamoicalSystem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:AnatomicalSystem" - } - ] - }, - { - "@id": "gbhBioSample:organ", - "@type": "rdf:Property", - "rdfs:comment": "Anatomical structure that performs a specific function or group of function.", - "rdfs:label": "organ", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:AnatomicalStructure" - } - ] - }, - { - "@id": "gbhBioSample:tissue", - "@type": "rdf:Property", - "rdfs:comment": "Indicate the tissue from which the sample was collected.", - "rdfs:label": "tissue", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:AnatomicalStructure" - } - ] - }, - { - "@id": "gbhBioSample:sex", - "@type": "rdf:Property", - "rdfs:comment": "The biological sex of the individual from which the sample was obtained.", - "rdfs:label": "sex", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:developmentalStage", - "@type": "rdf:Property", - "rdfs:comment": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.", - "rdfs:label": "developmentalStage", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - }, - { - "@id": "gbhBioSample:relationshipType", - "@type": "rdf:Property", - "rdfs:comment": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont.", - "rdfs:label": "relationshipType", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", - "schema:rangeIncludes": [ - { - "@id": "schema:Text" - } - ] - } - ] -} \ No newline at end of file From a109b1194c13177a0518560371877e86f6ef6d21 Mon Sep 17 00:00:00 2001 From: Nick Juty <3739470+nsjuty@users.noreply.github.com> Date: Wed, 14 Feb 2024 11:54:27 +0000 Subject: [PATCH 02/11] Add files via upload gbh biosample work --- BioSample/jsonld/type/gbhBioSamples.jsonld | 733 +++++++++++++++++++++ 1 file changed, 733 insertions(+) create mode 100644 BioSample/jsonld/type/gbhBioSamples.jsonld diff --git a/BioSample/jsonld/type/gbhBioSamples.jsonld b/BioSample/jsonld/type/gbhBioSamples.jsonld new file mode 100644 index 00000000..cf562064 --- /dev/null +++ b/BioSample/jsonld/type/gbhBioSamples.jsonld @@ -0,0 +1,733 @@ +{ + "@context": { + "schema": "http://schema.org/", + "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", + "rdfs": "http://www.w3.org/2000/01/rdf-schema#", + "gbhBioSample": "https://discovery.biothings.io/view/gbhBioSample/", + "bioschemas": "https://discovery.biothings.io/view/bioschemas/" + }, + "@graph": [ + { + "@id": "gbhBioSample:GbhBioSample", + "@type": "rdfs:Class", + "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Rita Monteiro and Joana Pauperio.", + "rdfs:label": "GbhBioSample", + "rdfs:subClassOf": { + "@id": "bioschemastypes:BioSample" + }, + "$validation": { + "$schema": "http://json-schema.org/draft-07/schema#", + "type": "object", + "properties": { + "dateCollected": { + "description": "The date on which the sample was collected." + }, + "datePublished": { + "description": "The date when the record of the sample will be made publicly available." + }, + "Submitter": { + "description": "The person or organization that registers the sample. " + }, + "maintainer": { + "description": "The Person or Organization who is responsible for the Sample." + }, + "contributor": { + "description": "Person or organization that contributes to the work." + }, + "longitude": { + "description": "The longitude from which the sample was originally collected. " + }, + "elevation": { + "description": "The altitude from which the sample was originally collected. " + }, + "latitude": { + "description": "The latitude from which the sample was originally collected. " + }, + "depth": { + "description": "The extent downward or inward from the surface from which the sample was originally collected. " + }, + "locationOfOrigin": { + "description": "The location from which the sample was originally collected." + }, + "dateModified": { + "description": "Date sample record was last updated." + }, + "keywords": { + "description": "Terms that capture the main subjects e.g. cancer, plant biology." + }, + "alternateIdentifier": { + "description": "An additional identifier for the same instance of the resource. " + }, + "contactPoint": { + "description": "Person or organization that can be contacted for more information or support. " + }, + "environmentalSystem": { + "description": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected." + }, + "sampleQuantity": { + "description": "A numeric value for a measurement of the size of a sample." + }, + "processingDate": { + "description": "The date the sample was processed or used in a method." + }, + "sampleState": { + "description": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid." + }, + "sampleType": { + "description": "Indicate the type of sample, e.g.fibroblasts, oocyte." + }, + "collectionMethod": { + "description": "Provide information about the conditions and methods of acquisition of samples." + }, + "sampleStorageTemperature": { + "description": "Storage condition of the sample" + }, + "sampleProcess": { + "description": "The processing technique that was applied to the sample, methods used to prepare the samples." + }, + "experimentalPurpose": { + "description": "Describe the planned or executed experimental procedures involving the samples." + }, + "instrument": { + "description": "Provide description of instruments and devices used." + }, + "grant": { + "description": "Provide grant information." + }, + "project": { + "description": "Information on the project." + }, + "relatedItem": { + "description": "Describe related items including other resources related to the samples." + }, + "isDescribedBy": { + "description": "List publications where the sample is mentioned or described." + }, + "studyTitle": { + "description": "Title of the study the samples belong to" + }, + "studyID": { + "description": "Indicate the study ID." + }, + "sampleAvailability": { + "description": "Indicate whether this resource is available for reuse." + }, + "accessConditions": { + "description": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted." + }, + "ethics": { + "description": "Indicate which ethics policies are associated with the sample." + }, + "scientificName": { + "description": "The full scientific name (order, family, subfamily, genus,specificEpithet)." + }, + "anatamoicalSystem": { + "description": "Indicate the anatomical system from which the sample is collect, e.g. circulatory, digestive, endocrine, immune and other systems." + }, + "organ": { + "description": "Indicate the organ the sample was collected from." + }, + "tissue": { + "description": "Indicate the tissue from which the sample was collected." + }, + "sex": { + "description": "The biological sex from which the sample was obtained." + }, + "developmentalStage": { + "description": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created." + }, + "relationshipType": { + "description": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont." + }, + "collector": { + "description": "The Person or Organization who collected the Sample. " + }, + "dateCreated": { + "description": "The date on which the CreativeWork was created or the item was added to a DataFeed. " + }, + "isControl": { + "description": "Indicates whether the sample is being used as a normal control, may be in combination with another sample." + }, + "itemLocation": { + "description": "Current location of the item." + }, + "locationCreated": { + "description": "The place where a sample underwent processing or creation, distinct from its original location." + }, + "associatedDisease": { + "description": "Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue." + }, + "biologicalRole": { + "description": "A role played by the BioChemEntity within a biological context." + }, + "isInvolvedInBiologicalProcess": { + "description": "Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence." + }, + "isLocatedInSubcellularLocation": { + "description": "Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence." + }, + "taxonomicRange": { + "description": "The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity." + }, + "alternateName": { + "description": "An alias for the item." + }, + "description": { + "description": "A description of the item." + }, + "identifier": { + "description": "The identifier property represents any kind of identifier for any kind of [[Thing]], such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See [background notes](/docs/datamodel.html#identifierBg) for more details.\n " + }, + "name": {}, + "sameAs": {}, + "url": { + "description": "URL of the item." + } + }, + "required": [], + "recommended": [], + "optional": [] + }, + "schemaVersion": [ + "https://schema.org/docs/releases.html#v23.0" + ] + }, + { + "@id": "gbhBioSample:dateCollected", + "@type": "rdf:Property", + "rdfs:comment": "The date on which the sample was collected.", + "rdfs:label": "dateCollected", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Date" + }, + { + "@id": "schema:DateTime" + } + ] + }, + { + "@id": "gbhBioSample:datePublished", + "@type": "rdf:Property", + "rdfs:comment": "The date when the record of the sample will be made publicly available.", + "rdfs:label": "datePublished", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Date" + }, + { + "@id": "schema:DateTime" + } + ] + }, + { + "@id": "gbhBioSample:Submitter", + "@type": "rdf:Property", + "rdfs:comment": "The person or organization that registers the sample. ", + "rdfs:label": "Submitter", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Person" + }, + { + "@id": "schema:Organization" + }, + { + "@id": "" + } + ] + }, + { + "@id": "gbhBioSample:maintainer", + "@type": "rdf:Property", + "rdfs:comment": "The Person or Organization who is responsible for the Sample.", + "rdfs:label": "maintainer", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Person" + }, + { + "@id": "schema:Organization" + } + ] + }, + { + "@id": "gbhBioSample:contributor", + "@type": "rdf:Property", + "rdfs:comment": "Person or organization that contributes to the work.", + "rdfs:label": "contributor", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Person" + }, + { + "@id": "schema:Organization" + } + ] + }, + { + "@id": "gbhBioSample:longitude", + "@type": "rdf:Property", + "rdfs:comment": "The longitude from which the sample was originally collected. ", + "rdfs:label": "longitude", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:GeoCoordinates" + } + ] + }, + { + "@id": "gbhBioSample:elevation", + "@type": "rdf:Property", + "rdfs:comment": "The altitude from which the sample was originally collected. ", + "rdfs:label": "elevation", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:GeoCoordinates" + } + ] + }, + { + "@id": "gbhBioSample:latitude", + "@type": "rdf:Property", + "rdfs:comment": "The latitude from which the sample was originally collected. ", + "rdfs:label": "latitude", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:GeoCoordinates" + } + ] + }, + { + "@id": "gbhBioSample:depth", + "@type": "rdf:Property", + "rdfs:comment": "The extent downward or inward from the surface from which the sample was originally collected. ", + "rdfs:label": "depth", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:QuantitativeValue" + } + ] + }, + { + "@id": "gbhBioSample:locationOfOrigin", + "@type": "rdf:Property", + "rdfs:comment": "The location from which the sample was originally collected.", + "rdfs:label": "locationOfOrigin", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:GeoCoordinates" + } + ] + }, + { + "@id": "gbhBioSample:dateModified", + "@type": "rdf:Property", + "rdfs:comment": "Date sample record was last updated.", + "rdfs:label": "dateModified", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Date" + }, + { + "@id": "schema:DateTime" + } + ] + }, + { + "@id": "gbhBioSample:keywords", + "@type": "rdf:Property", + "rdfs:comment": "Terms that capture the main subjects e.g. cancer, plant biology.", + "rdfs:label": "keywords", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:alternateIdentifier", + "@type": "rdf:Property", + "rdfs:comment": "An additional identifier for the same instance of the resource. ", + "rdfs:label": "alternateIdentifier", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:contactPoint", + "@type": "rdf:Property", + "rdfs:comment": "Person or organization that can be contacted for more information or support. ", + "rdfs:label": "contactPoint", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Person" + }, + { + "@id": "schema:Organization" + } + ] + }, + { + "@id": "gbhBioSample:environmentalSystem", + "@type": "rdf:Property", + "rdfs:comment": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected.", + "rdfs:label": "environmentalSystem", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:sampleQuantity", + "@type": "rdf:Property", + "rdfs:comment": "A numeric value for a measurement of the size of a sample.", + "rdfs:label": "sampleQuantity", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:QuantitativeValue" + } + ] + }, + { + "@id": "gbhBioSample:processingDate", + "@type": "rdf:Property", + "rdfs:comment": "The date the sample was processed or used in a method.", + "rdfs:label": "processingDate", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Date" + }, + { + "@id": "schema:DateTime" + } + ] + }, + { + "@id": "gbhBioSample:sampleState", + "@type": "rdf:Property", + "rdfs:comment": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid.", + "rdfs:label": "sampleState", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:sampleType", + "@type": "rdf:Property", + "rdfs:comment": "Indicate the type of sample", + "rdfs:label": "sampleType", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + }, + { + "@id": "schema:URL" + } + ] + }, + { + "@id": "gbhBioSample:collectionMethod", + "@type": "rdf:Property", + "rdfs:comment": "Provide information about the conditions and methods of acquisition of samples. ", + "rdfs:label": "collectionMethod", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:sampleStorageTemperature", + "@type": "rdf:Property", + "rdfs:comment": "Storage condition of the sample.", + "rdfs:label": "sampleStorageTemperature", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:QualitativeValue" + }, + { + "@id": "" + } + ] + }, + { + "@id": "gbhBioSample:sampleProcess", + "@type": "rdf:Property", + "rdfs:comment": "The processing technique that was applied to the sample, methods used to prepare the samples.", + "rdfs:label": "sampleProcess", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:experimentalPurpose", + "@type": "rdf:Property", + "rdfs:comment": "Describe the planned or executed experimental procedures involving the samples.", + "rdfs:label": "experimentalPurpose", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:instrument", + "@type": "rdf:Property", + "rdfs:comment": "Provide description of instruments and devices used.", + "rdfs:label": "instrument", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + }, + { + "@id": "schema:URL" + } + ] + }, + { + "@id": "gbhBioSample:grant", + "@type": "rdf:Property", + "rdfs:comment": "Provide grant information.", + "rdfs:label": "grant", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Grant" + }, + { + "@id": "" + } + ] + }, + { + "@id": "gbhBioSample:project", + "@type": "rdf:Property", + "rdfs:comment": "Information on the project.", + "rdfs:label": "project", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:ResearchProject" + } + ] + }, + { + "@id": "gbhBioSample:relatedItem", + "@type": "rdf:Property", + "rdfs:comment": "Describe related items including other resources related to the samples.", + "rdfs:label": "relatedItem", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Dataset" + }, + { + "@id": "schema:ImageObject" + }, + { + "@id": "schema:CreativeWork" + }, + { + "@id": "schema:Text" + }, + { + "@id": "schema:URL" + } + ] + }, + { + "@id": "gbhBioSample:isDescribedBy", + "@type": "rdf:Property", + "rdfs:comment": "List publications where the sample is mentioned or described.", + "rdfs:label": "isDescribedBy", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Article" + } + ] + }, + { + "@id": "gbhBioSample:studyTitle", + "@type": "rdf:Property", + "rdfs:comment": "Title of the study the samples belong to", + "rdfs:label": "studyTitle", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:studyID", + "@type": "rdf:Property", + "rdfs:comment": "Indicate the study ID.", + "rdfs:label": "studyID", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + }, + { + "@id": "schema:URL" + } + ] + }, + { + "@id": "gbhBioSample:sampleAvailability", + "@type": "rdf:Property", + "rdfs:comment": "Indicate whether this resource is available for reuse.", + "rdfs:label": "sampleAvailability", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Boolean" + } + ] + }, + { + "@id": "gbhBioSample:accessConditions", + "@type": "rdf:Property", + "rdfs:comment": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted.", + "rdfs:label": "accessConditions", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:ethics", + "@type": "rdf:Property", + "rdfs:comment": "Indicate which ethics policies are associated with the sample.", + "rdfs:label": "ethics", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + }, + { + "@id": "" + } + ] + }, + { + "@id": "gbhBioSample:scientificName", + "@type": "rdf:Property", + "rdfs:comment": "The full scientific name (order, family, subfamily, genus,specificEpithet).", + "rdfs:label": "scientificName", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:anatamoicalSystem", + "@type": "rdf:Property", + "rdfs:comment": "An anatomical system is a group of anatomical structures that work together to perform a certain task. Can include circulatory, digestive, endocrine, immune and other systems", + "rdfs:label": "anatamoicalSystem", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:AnatomicalSystem" + } + ] + }, + { + "@id": "gbhBioSample:organ", + "@type": "rdf:Property", + "rdfs:comment": "Anatomical structure that performs a specific function or group of function.", + "rdfs:label": "organ", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:AnatomicalStructure" + } + ] + }, + { + "@id": "gbhBioSample:tissue", + "@type": "rdf:Property", + "rdfs:comment": "Indicate the tissue from which the sample was collected.", + "rdfs:label": "tissue", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:AnatomicalStructure" + } + ] + }, + { + "@id": "gbhBioSample:sex", + "@type": "rdf:Property", + "rdfs:comment": "The biological sex of the individual from which the sample was obtained.", + "rdfs:label": "sex", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:developmentalStage", + "@type": "rdf:Property", + "rdfs:comment": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.", + "rdfs:label": "developmentalStage", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + }, + { + "@id": "gbhBioSample:relationshipType", + "@type": "rdf:Property", + "rdfs:comment": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont.", + "rdfs:label": "relationshipType", + "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:rangeIncludes": [ + { + "@id": "schema:Text" + } + ] + } + ] +} \ No newline at end of file From 0ffb6a650b7dff7b2f2dac47e65b525086f8d0ec Mon Sep 17 00:00:00 2001 From: gtsueng Date: Wed, 14 Feb 2024 07:30:14 -0800 Subject: [PATCH 03/11] Update gbhBioSamples.jsonld Deleted $validation section since that's only used to add constraints to profiles --- BioSample/jsonld/type/gbhBioSamples.jsonld | 175 +-------------------- 1 file changed, 1 insertion(+), 174 deletions(-) diff --git a/BioSample/jsonld/type/gbhBioSamples.jsonld b/BioSample/jsonld/type/gbhBioSamples.jsonld index cf562064..413d17d9 100644 --- a/BioSample/jsonld/type/gbhBioSamples.jsonld +++ b/BioSample/jsonld/type/gbhBioSamples.jsonld @@ -15,179 +15,6 @@ "rdfs:subClassOf": { "@id": "bioschemastypes:BioSample" }, - "$validation": { - "$schema": "http://json-schema.org/draft-07/schema#", - "type": "object", - "properties": { - "dateCollected": { - "description": "The date on which the sample was collected." - }, - "datePublished": { - "description": "The date when the record of the sample will be made publicly available." - }, - "Submitter": { - "description": "The person or organization that registers the sample. " - }, - "maintainer": { - "description": "The Person or Organization who is responsible for the Sample." - }, - "contributor": { - "description": "Person or organization that contributes to the work." - }, - "longitude": { - "description": "The longitude from which the sample was originally collected. " - }, - "elevation": { - "description": "The altitude from which the sample was originally collected. " - }, - "latitude": { - "description": "The latitude from which the sample was originally collected. " - }, - "depth": { - "description": "The extent downward or inward from the surface from which the sample was originally collected. " - }, - "locationOfOrigin": { - "description": "The location from which the sample was originally collected." - }, - "dateModified": { - "description": "Date sample record was last updated." - }, - "keywords": { - "description": "Terms that capture the main subjects e.g. cancer, plant biology." - }, - "alternateIdentifier": { - "description": "An additional identifier for the same instance of the resource. " - }, - "contactPoint": { - "description": "Person or organization that can be contacted for more information or support. " - }, - "environmentalSystem": { - "description": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected." - }, - "sampleQuantity": { - "description": "A numeric value for a measurement of the size of a sample." - }, - "processingDate": { - "description": "The date the sample was processed or used in a method." - }, - "sampleState": { - "description": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid." - }, - "sampleType": { - "description": "Indicate the type of sample, e.g.fibroblasts, oocyte." - }, - "collectionMethod": { - "description": "Provide information about the conditions and methods of acquisition of samples." - }, - "sampleStorageTemperature": { - "description": "Storage condition of the sample" - }, - "sampleProcess": { - "description": "The processing technique that was applied to the sample, methods used to prepare the samples." - }, - "experimentalPurpose": { - "description": "Describe the planned or executed experimental procedures involving the samples." - }, - "instrument": { - "description": "Provide description of instruments and devices used." - }, - "grant": { - "description": "Provide grant information." - }, - "project": { - "description": "Information on the project." - }, - "relatedItem": { - "description": "Describe related items including other resources related to the samples." - }, - "isDescribedBy": { - "description": "List publications where the sample is mentioned or described." - }, - "studyTitle": { - "description": "Title of the study the samples belong to" - }, - "studyID": { - "description": "Indicate the study ID." - }, - "sampleAvailability": { - "description": "Indicate whether this resource is available for reuse." - }, - "accessConditions": { - "description": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted." - }, - "ethics": { - "description": "Indicate which ethics policies are associated with the sample." - }, - "scientificName": { - "description": "The full scientific name (order, family, subfamily, genus,specificEpithet)." - }, - "anatamoicalSystem": { - "description": "Indicate the anatomical system from which the sample is collect, e.g. circulatory, digestive, endocrine, immune and other systems." - }, - "organ": { - "description": "Indicate the organ the sample was collected from." - }, - "tissue": { - "description": "Indicate the tissue from which the sample was collected." - }, - "sex": { - "description": "The biological sex from which the sample was obtained." - }, - "developmentalStage": { - "description": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created." - }, - "relationshipType": { - "description": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont." - }, - "collector": { - "description": "The Person or Organization who collected the Sample. " - }, - "dateCreated": { - "description": "The date on which the CreativeWork was created or the item was added to a DataFeed. " - }, - "isControl": { - "description": "Indicates whether the sample is being used as a normal control, may be in combination with another sample." - }, - "itemLocation": { - "description": "Current location of the item." - }, - "locationCreated": { - "description": "The place where a sample underwent processing or creation, distinct from its original location." - }, - "associatedDisease": { - "description": "Disease associated to this BioChemEntity. Such disease can be a MedicalCondition or a URL. If you want to add an evidence supporting the association, please use PropertyValue." - }, - "biologicalRole": { - "description": "A role played by the BioChemEntity within a biological context." - }, - "isInvolvedInBiologicalProcess": { - "description": "Biological process this BioChemEntity is involved in; please use PropertyValue if you want to include any evidence." - }, - "isLocatedInSubcellularLocation": { - "description": "Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence." - }, - "taxonomicRange": { - "description": "The taxonomic grouping of the organism that expresses, encodes, or in someway related to the BioChemEntity." - }, - "alternateName": { - "description": "An alias for the item." - }, - "description": { - "description": "A description of the item." - }, - "identifier": { - "description": "The identifier property represents any kind of identifier for any kind of [[Thing]], such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See [background notes](/docs/datamodel.html#identifierBg) for more details.\n " - }, - "name": {}, - "sameAs": {}, - "url": { - "description": "URL of the item." - } - }, - "required": [], - "recommended": [], - "optional": [] - }, "schemaVersion": [ "https://schema.org/docs/releases.html#v23.0" ] @@ -730,4 +557,4 @@ ] } ] -} \ No newline at end of file +} From 71c146fe7d3a93674a85ba57b78075998a04e275 Mon Sep 17 00:00:00 2001 From: gtsueng Date: Thu, 15 Feb 2024 09:05:59 -0800 Subject: [PATCH 04/11] Update gbhBioSamples.jsonld * Fix typos in anatomicalSystem * Fix casing with Submitter --> submitter * Change `grant` to `funding` for consistency with schema.org * Change parent class from Bioschemas:BioSample to Bioschemas:Sample after confirmation with Nick --- BioSample/jsonld/type/gbhBioSamples.jsonld | 184 ++++++++++----------- 1 file changed, 89 insertions(+), 95 deletions(-) diff --git a/BioSample/jsonld/type/gbhBioSamples.jsonld b/BioSample/jsonld/type/gbhBioSamples.jsonld index 413d17d9..b763c492 100644 --- a/BioSample/jsonld/type/gbhBioSamples.jsonld +++ b/BioSample/jsonld/type/gbhBioSamples.jsonld @@ -3,28 +3,28 @@ "schema": "http://schema.org/", "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", - "gbhBioSample": "https://discovery.biothings.io/view/gbhBioSample/", + "bioschemastypesdrafts": "https://discovery.biothings.io/view/bioschemastypesdrafts/", "bioschemas": "https://discovery.biothings.io/view/bioschemas/" }, "@graph": [ { - "@id": "gbhBioSample:GbhBioSample", + "@id": "bioschemastypesdrafts:BioSample", "@type": "rdfs:Class", - "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Rita Monteiro and Joana Pauperio.", - "rdfs:label": "GbhBioSample", + "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Ginger Tsueng, Rita Monteiro and Joana Pauperio. Note, the property `funding` was originally added as `grant`, but was changed to for consistency with schema.org.", + "rdfs:label": "BioSample", "rdfs:subClassOf": { - "@id": "bioschemastypes:BioSample" + "@id": "bioschemastypesdrafts:Sample" }, "schemaVersion": [ "https://schema.org/docs/releases.html#v23.0" ] }, { - "@id": "gbhBioSample:dateCollected", + "@id": "bioschemastypesdrafts:dateCollected", "@type": "rdf:Property", "rdfs:comment": "The date on which the sample was collected.", "rdfs:label": "dateCollected", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -35,11 +35,11 @@ ] }, { - "@id": "gbhBioSample:datePublished", + "@id": "bioschemastypesdrafts:datePublished", "@type": "rdf:Property", "rdfs:comment": "The date when the record of the sample will be made publicly available.", "rdfs:label": "datePublished", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -50,29 +50,26 @@ ] }, { - "@id": "gbhBioSample:Submitter", + "@id": "bioschemastypesdrafts:submitter", "@type": "rdf:Property", "rdfs:comment": "The person or organization that registers the sample. ", - "rdfs:label": "Submitter", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "rdfs:label": "submitter", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" }, { "@id": "schema:Organization" - }, - { - "@id": "" } ] }, { - "@id": "gbhBioSample:maintainer", + "@id": "bioschemastypesdrafts:maintainer", "@type": "rdf:Property", "rdfs:comment": "The Person or Organization who is responsible for the Sample.", "rdfs:label": "maintainer", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -83,11 +80,11 @@ ] }, { - "@id": "gbhBioSample:contributor", + "@id": "bioschemastypesdrafts:contributor", "@type": "rdf:Property", "rdfs:comment": "Person or organization that contributes to the work.", "rdfs:label": "contributor", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -98,11 +95,11 @@ ] }, { - "@id": "gbhBioSample:longitude", + "@id": "bioschemastypesdrafts:longitude", "@type": "rdf:Property", "rdfs:comment": "The longitude from which the sample was originally collected. ", "rdfs:label": "longitude", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -110,11 +107,11 @@ ] }, { - "@id": "gbhBioSample:elevation", + "@id": "bioschemastypesdrafts:elevation", "@type": "rdf:Property", "rdfs:comment": "The altitude from which the sample was originally collected. ", "rdfs:label": "elevation", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -122,11 +119,11 @@ ] }, { - "@id": "gbhBioSample:latitude", + "@id": "bioschemastypesdrafts:latitude", "@type": "rdf:Property", "rdfs:comment": "The latitude from which the sample was originally collected. ", "rdfs:label": "latitude", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -134,11 +131,11 @@ ] }, { - "@id": "gbhBioSample:depth", + "@id": "bioschemastypesdrafts:depth", "@type": "rdf:Property", "rdfs:comment": "The extent downward or inward from the surface from which the sample was originally collected. ", "rdfs:label": "depth", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QuantitativeValue" @@ -146,11 +143,11 @@ ] }, { - "@id": "gbhBioSample:locationOfOrigin", + "@id": "bioschemastypesdrafts:locationOfOrigin", "@type": "rdf:Property", "rdfs:comment": "The location from which the sample was originally collected.", "rdfs:label": "locationOfOrigin", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -158,11 +155,11 @@ ] }, { - "@id": "gbhBioSample:dateModified", + "@id": "bioschemastypesdrafts:dateModified", "@type": "rdf:Property", "rdfs:comment": "Date sample record was last updated.", "rdfs:label": "dateModified", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -173,11 +170,11 @@ ] }, { - "@id": "gbhBioSample:keywords", + "@id": "bioschemastypesdrafts:keywords", "@type": "rdf:Property", "rdfs:comment": "Terms that capture the main subjects e.g. cancer, plant biology.", "rdfs:label": "keywords", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -185,11 +182,11 @@ ] }, { - "@id": "gbhBioSample:alternateIdentifier", + "@id": "bioschemastypesdrafts:alternateIdentifier", "@type": "rdf:Property", "rdfs:comment": "An additional identifier for the same instance of the resource. ", "rdfs:label": "alternateIdentifier", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -197,11 +194,11 @@ ] }, { - "@id": "gbhBioSample:contactPoint", + "@id": "bioschemastypesdrafts:contactPoint", "@type": "rdf:Property", "rdfs:comment": "Person or organization that can be contacted for more information or support. ", "rdfs:label": "contactPoint", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -212,11 +209,11 @@ ] }, { - "@id": "gbhBioSample:environmentalSystem", + "@id": "bioschemastypesdrafts:environmentalSystem", "@type": "rdf:Property", "rdfs:comment": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected.", "rdfs:label": "environmentalSystem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -224,11 +221,11 @@ ] }, { - "@id": "gbhBioSample:sampleQuantity", + "@id": "bioschemastypesdrafts:sampleQuantity", "@type": "rdf:Property", "rdfs:comment": "A numeric value for a measurement of the size of a sample.", "rdfs:label": "sampleQuantity", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QuantitativeValue" @@ -236,11 +233,11 @@ ] }, { - "@id": "gbhBioSample:processingDate", + "@id": "bioschemastypesdrafts:processingDate", "@type": "rdf:Property", "rdfs:comment": "The date the sample was processed or used in a method.", "rdfs:label": "processingDate", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -251,11 +248,11 @@ ] }, { - "@id": "gbhBioSample:sampleState", + "@id": "bioschemastypesdrafts:sampleState", "@type": "rdf:Property", "rdfs:comment": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid.", "rdfs:label": "sampleState", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -263,11 +260,11 @@ ] }, { - "@id": "gbhBioSample:sampleType", + "@id": "bioschemastypesdrafts:sampleType", "@type": "rdf:Property", "rdfs:comment": "Indicate the type of sample", "rdfs:label": "sampleType", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -278,11 +275,11 @@ ] }, { - "@id": "gbhBioSample:collectionMethod", + "@id": "bioschemastypesdrafts:collectionMethod", "@type": "rdf:Property", "rdfs:comment": "Provide information about the conditions and methods of acquisition of samples. ", "rdfs:label": "collectionMethod", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -290,11 +287,11 @@ ] }, { - "@id": "gbhBioSample:sampleStorageTemperature", + "@id": "bioschemastypesdrafts:sampleStorageTemperature", "@type": "rdf:Property", "rdfs:comment": "Storage condition of the sample.", "rdfs:label": "sampleStorageTemperature", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QualitativeValue" @@ -305,11 +302,11 @@ ] }, { - "@id": "gbhBioSample:sampleProcess", + "@id": "bioschemastypesdrafts:sampleProcess", "@type": "rdf:Property", "rdfs:comment": "The processing technique that was applied to the sample, methods used to prepare the samples.", "rdfs:label": "sampleProcess", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -317,11 +314,11 @@ ] }, { - "@id": "gbhBioSample:experimentalPurpose", + "@id": "bioschemastypesdrafts:experimentalPurpose", "@type": "rdf:Property", "rdfs:comment": "Describe the planned or executed experimental procedures involving the samples.", "rdfs:label": "experimentalPurpose", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -329,11 +326,11 @@ ] }, { - "@id": "gbhBioSample:instrument", + "@id": "bioschemastypesdrafts:instrument", "@type": "rdf:Property", "rdfs:comment": "Provide description of instruments and devices used.", "rdfs:label": "instrument", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -344,26 +341,23 @@ ] }, { - "@id": "gbhBioSample:grant", + "@id": "bioschemastypesdrafts:funding", "@type": "rdf:Property", - "rdfs:comment": "Provide grant information.", - "rdfs:label": "grant", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "rdfs:comment": "Provide funding information.", + "rdfs:label": "funding", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Grant" - }, - { - "@id": "" } ] }, { - "@id": "gbhBioSample:project", + "@id": "bioschemastypesdrafts:project", "@type": "rdf:Property", "rdfs:comment": "Information on the project.", "rdfs:label": "project", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:ResearchProject" @@ -371,11 +365,11 @@ ] }, { - "@id": "gbhBioSample:relatedItem", + "@id": "bioschemastypesdrafts:relatedItem", "@type": "rdf:Property", "rdfs:comment": "Describe related items including other resources related to the samples.", "rdfs:label": "relatedItem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Dataset" @@ -395,11 +389,11 @@ ] }, { - "@id": "gbhBioSample:isDescribedBy", + "@id": "bioschemastypesdrafts:isDescribedBy", "@type": "rdf:Property", "rdfs:comment": "List publications where the sample is mentioned or described.", "rdfs:label": "isDescribedBy", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Article" @@ -407,11 +401,11 @@ ] }, { - "@id": "gbhBioSample:studyTitle", + "@id": "bioschemastypesdrafts:studyTitle", "@type": "rdf:Property", "rdfs:comment": "Title of the study the samples belong to", "rdfs:label": "studyTitle", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -419,11 +413,11 @@ ] }, { - "@id": "gbhBioSample:studyID", + "@id": "bioschemastypesdrafts:studyID", "@type": "rdf:Property", "rdfs:comment": "Indicate the study ID.", "rdfs:label": "studyID", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -434,11 +428,11 @@ ] }, { - "@id": "gbhBioSample:sampleAvailability", + "@id": "bioschemastypesdrafts:sampleAvailability", "@type": "rdf:Property", "rdfs:comment": "Indicate whether this resource is available for reuse.", "rdfs:label": "sampleAvailability", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Boolean" @@ -446,11 +440,11 @@ ] }, { - "@id": "gbhBioSample:accessConditions", + "@id": "bioschemastypesdrafts:accessConditions", "@type": "rdf:Property", "rdfs:comment": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted.", "rdfs:label": "accessConditions", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -458,11 +452,11 @@ ] }, { - "@id": "gbhBioSample:ethics", + "@id": "bioschemastypesdrafts:ethics", "@type": "rdf:Property", "rdfs:comment": "Indicate which ethics policies are associated with the sample.", "rdfs:label": "ethics", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -473,11 +467,11 @@ ] }, { - "@id": "gbhBioSample:scientificName", + "@id": "bioschemastypesdrafts:scientificName", "@type": "rdf:Property", "rdfs:comment": "The full scientific name (order, family, subfamily, genus,specificEpithet).", "rdfs:label": "scientificName", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -485,11 +479,11 @@ ] }, { - "@id": "gbhBioSample:anatamoicalSystem", + "@id": "bioschemastypesdrafts:anatomicalSystem", "@type": "rdf:Property", "rdfs:comment": "An anatomical system is a group of anatomical structures that work together to perform a certain task. Can include circulatory, digestive, endocrine, immune and other systems", - "rdfs:label": "anatamoicalSystem", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "rdfs:label": "anatomicalSystem", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalSystem" @@ -497,11 +491,11 @@ ] }, { - "@id": "gbhBioSample:organ", + "@id": "bioschemastypesdrafts:organ", "@type": "rdf:Property", "rdfs:comment": "Anatomical structure that performs a specific function or group of function.", "rdfs:label": "organ", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalStructure" @@ -509,11 +503,11 @@ ] }, { - "@id": "gbhBioSample:tissue", + "@id": "bioschemastypesdrafts:tissue", "@type": "rdf:Property", "rdfs:comment": "Indicate the tissue from which the sample was collected.", "rdfs:label": "tissue", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalStructure" @@ -521,11 +515,11 @@ ] }, { - "@id": "gbhBioSample:sex", + "@id": "bioschemastypesdrafts:sex", "@type": "rdf:Property", "rdfs:comment": "The biological sex of the individual from which the sample was obtained.", "rdfs:label": "sex", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -533,11 +527,11 @@ ] }, { - "@id": "gbhBioSample:developmentalStage", + "@id": "bioschemastypesdrafts:developmentalStage", "@type": "rdf:Property", "rdfs:comment": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.", "rdfs:label": "developmentalStage", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -545,11 +539,11 @@ ] }, { - "@id": "gbhBioSample:relationshipType", + "@id": "bioschemastypesdrafts:relationshipType", "@type": "rdf:Property", "rdfs:comment": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont.", "rdfs:label": "relationshipType", - "schema:domainIncludes": "gbhBioSample:GbhBioSample", + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" From 0a76f63f8c21f63b8d87f00c4c46dd28c343fbde Mon Sep 17 00:00:00 2001 From: gtsueng Date: Wed, 21 Feb 2024 07:46:46 -0800 Subject: [PATCH 05/11] Update and rename gbhBioSamples.jsonld to BioSample_v0.2-DRAFT.jsonld --- ...les.jsonld => BioSample_v0.2-DRAFT.jsonld} | 166 +++++++++--------- 1 file changed, 83 insertions(+), 83 deletions(-) rename BioSample/jsonld/type/{gbhBioSamples.jsonld => BioSample_v0.2-DRAFT.jsonld} (70%) diff --git a/BioSample/jsonld/type/gbhBioSamples.jsonld b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld similarity index 70% rename from BioSample/jsonld/type/gbhBioSamples.jsonld rename to BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld index b763c492..933def76 100644 --- a/BioSample/jsonld/type/gbhBioSamples.jsonld +++ b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld @@ -4,27 +4,27 @@ "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", "bioschemastypesdrafts": "https://discovery.biothings.io/view/bioschemastypesdrafts/", - "bioschemas": "https://discovery.biothings.io/view/bioschemas/" + "bioschemastempdrafts": "https://discovery.biothings.io/view/bioschemastempdrafts/" }, "@graph": [ { - "@id": "bioschemastypesdrafts:BioSample", + "@id": "bioschemastempdrafts:BioSample", "@type": "rdfs:Class", "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Ginger Tsueng, Rita Monteiro and Joana Pauperio. Note, the property `funding` was originally added as `grant`, but was changed to for consistency with schema.org.", "rdfs:label": "BioSample", "rdfs:subClassOf": { - "@id": "bioschemastypesdrafts:Sample" + "@id": "bioschemastypedrafts:Sample" }, "schemaVersion": [ "https://schema.org/docs/releases.html#v23.0" ] }, { - "@id": "bioschemastypesdrafts:dateCollected", + "@id": "bioschemastempdrafts:dateCollected", "@type": "rdf:Property", "rdfs:comment": "The date on which the sample was collected.", "rdfs:label": "dateCollected", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -35,11 +35,11 @@ ] }, { - "@id": "bioschemastypesdrafts:datePublished", + "@id": "bioschemastempdrafts:datePublished", "@type": "rdf:Property", "rdfs:comment": "The date when the record of the sample will be made publicly available.", "rdfs:label": "datePublished", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -50,11 +50,11 @@ ] }, { - "@id": "bioschemastypesdrafts:submitter", + "@id": "bioschemastempdrafts:submitter", "@type": "rdf:Property", "rdfs:comment": "The person or organization that registers the sample. ", "rdfs:label": "submitter", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -65,11 +65,11 @@ ] }, { - "@id": "bioschemastypesdrafts:maintainer", + "@id": "bioschemastempdrafts:maintainer", "@type": "rdf:Property", "rdfs:comment": "The Person or Organization who is responsible for the Sample.", "rdfs:label": "maintainer", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -80,11 +80,11 @@ ] }, { - "@id": "bioschemastypesdrafts:contributor", + "@id": "bioschemastempdrafts:contributor", "@type": "rdf:Property", "rdfs:comment": "Person or organization that contributes to the work.", "rdfs:label": "contributor", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -95,11 +95,11 @@ ] }, { - "@id": "bioschemastypesdrafts:longitude", + "@id": "bioschemastempdrafts:longitude", "@type": "rdf:Property", "rdfs:comment": "The longitude from which the sample was originally collected. ", "rdfs:label": "longitude", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -107,11 +107,11 @@ ] }, { - "@id": "bioschemastypesdrafts:elevation", + "@id": "bioschemastempdrafts:elevation", "@type": "rdf:Property", "rdfs:comment": "The altitude from which the sample was originally collected. ", "rdfs:label": "elevation", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -119,11 +119,11 @@ ] }, { - "@id": "bioschemastypesdrafts:latitude", + "@id": "bioschemastempdrafts:latitude", "@type": "rdf:Property", "rdfs:comment": "The latitude from which the sample was originally collected. ", "rdfs:label": "latitude", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -131,11 +131,11 @@ ] }, { - "@id": "bioschemastypesdrafts:depth", + "@id": "bioschemastempdrafts:depth", "@type": "rdf:Property", "rdfs:comment": "The extent downward or inward from the surface from which the sample was originally collected. ", "rdfs:label": "depth", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QuantitativeValue" @@ -143,11 +143,11 @@ ] }, { - "@id": "bioschemastypesdrafts:locationOfOrigin", + "@id": "bioschemastempdrafts:locationOfOrigin", "@type": "rdf:Property", "rdfs:comment": "The location from which the sample was originally collected.", "rdfs:label": "locationOfOrigin", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -155,11 +155,11 @@ ] }, { - "@id": "bioschemastypesdrafts:dateModified", + "@id": "bioschemastempdrafts:dateModified", "@type": "rdf:Property", "rdfs:comment": "Date sample record was last updated.", "rdfs:label": "dateModified", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -170,11 +170,11 @@ ] }, { - "@id": "bioschemastypesdrafts:keywords", + "@id": "bioschemastempdrafts:keywords", "@type": "rdf:Property", "rdfs:comment": "Terms that capture the main subjects e.g. cancer, plant biology.", "rdfs:label": "keywords", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -182,11 +182,11 @@ ] }, { - "@id": "bioschemastypesdrafts:alternateIdentifier", + "@id": "bioschemastempdrafts:alternateIdentifier", "@type": "rdf:Property", "rdfs:comment": "An additional identifier for the same instance of the resource. ", "rdfs:label": "alternateIdentifier", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -194,11 +194,11 @@ ] }, { - "@id": "bioschemastypesdrafts:contactPoint", + "@id": "bioschemastempdrafts:contactPoint", "@type": "rdf:Property", "rdfs:comment": "Person or organization that can be contacted for more information or support. ", "rdfs:label": "contactPoint", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -209,11 +209,11 @@ ] }, { - "@id": "bioschemastypesdrafts:environmentalSystem", + "@id": "bioschemastempdrafts:environmentalSystem", "@type": "rdf:Property", "rdfs:comment": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected.", "rdfs:label": "environmentalSystem", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -221,11 +221,11 @@ ] }, { - "@id": "bioschemastypesdrafts:sampleQuantity", + "@id": "bioschemastempdrafts:sampleQuantity", "@type": "rdf:Property", "rdfs:comment": "A numeric value for a measurement of the size of a sample.", "rdfs:label": "sampleQuantity", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QuantitativeValue" @@ -233,11 +233,11 @@ ] }, { - "@id": "bioschemastypesdrafts:processingDate", + "@id": "bioschemastempdrafts:processingDate", "@type": "rdf:Property", "rdfs:comment": "The date the sample was processed or used in a method.", "rdfs:label": "processingDate", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -248,11 +248,11 @@ ] }, { - "@id": "bioschemastypesdrafts:sampleState", + "@id": "bioschemastempdrafts:sampleState", "@type": "rdf:Property", "rdfs:comment": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid.", "rdfs:label": "sampleState", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -260,11 +260,11 @@ ] }, { - "@id": "bioschemastypesdrafts:sampleType", + "@id": "bioschemastempdrafts:sampleType", "@type": "rdf:Property", "rdfs:comment": "Indicate the type of sample", "rdfs:label": "sampleType", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -275,11 +275,11 @@ ] }, { - "@id": "bioschemastypesdrafts:collectionMethod", + "@id": "bioschemastempdrafts:collectionMethod", "@type": "rdf:Property", "rdfs:comment": "Provide information about the conditions and methods of acquisition of samples. ", "rdfs:label": "collectionMethod", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -287,11 +287,11 @@ ] }, { - "@id": "bioschemastypesdrafts:sampleStorageTemperature", + "@id": "bioschemastempdrafts:sampleStorageTemperature", "@type": "rdf:Property", "rdfs:comment": "Storage condition of the sample.", "rdfs:label": "sampleStorageTemperature", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QualitativeValue" @@ -302,11 +302,11 @@ ] }, { - "@id": "bioschemastypesdrafts:sampleProcess", + "@id": "bioschemastempdrafts:sampleProcess", "@type": "rdf:Property", "rdfs:comment": "The processing technique that was applied to the sample, methods used to prepare the samples.", "rdfs:label": "sampleProcess", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -314,11 +314,11 @@ ] }, { - "@id": "bioschemastypesdrafts:experimentalPurpose", + "@id": "bioschemastempdrafts:experimentalPurpose", "@type": "rdf:Property", "rdfs:comment": "Describe the planned or executed experimental procedures involving the samples.", "rdfs:label": "experimentalPurpose", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -326,11 +326,11 @@ ] }, { - "@id": "bioschemastypesdrafts:instrument", + "@id": "bioschemastempdrafts:instrument", "@type": "rdf:Property", "rdfs:comment": "Provide description of instruments and devices used.", "rdfs:label": "instrument", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -341,11 +341,11 @@ ] }, { - "@id": "bioschemastypesdrafts:funding", + "@id": "bioschemastempdrafts:funding", "@type": "rdf:Property", "rdfs:comment": "Provide funding information.", "rdfs:label": "funding", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Grant" @@ -353,11 +353,11 @@ ] }, { - "@id": "bioschemastypesdrafts:project", + "@id": "bioschemastempdrafts:project", "@type": "rdf:Property", "rdfs:comment": "Information on the project.", "rdfs:label": "project", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:ResearchProject" @@ -365,11 +365,11 @@ ] }, { - "@id": "bioschemastypesdrafts:relatedItem", + "@id": "bioschemastempdrafts:relatedItem", "@type": "rdf:Property", "rdfs:comment": "Describe related items including other resources related to the samples.", "rdfs:label": "relatedItem", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Dataset" @@ -389,11 +389,11 @@ ] }, { - "@id": "bioschemastypesdrafts:isDescribedBy", + "@id": "bioschemastempdrafts:isDescribedBy", "@type": "rdf:Property", "rdfs:comment": "List publications where the sample is mentioned or described.", "rdfs:label": "isDescribedBy", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Article" @@ -401,11 +401,11 @@ ] }, { - "@id": "bioschemastypesdrafts:studyTitle", + "@id": "bioschemastempdrafts:studyTitle", "@type": "rdf:Property", "rdfs:comment": "Title of the study the samples belong to", "rdfs:label": "studyTitle", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -413,11 +413,11 @@ ] }, { - "@id": "bioschemastypesdrafts:studyID", + "@id": "bioschemastempdrafts:studyID", "@type": "rdf:Property", "rdfs:comment": "Indicate the study ID.", "rdfs:label": "studyID", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -428,11 +428,11 @@ ] }, { - "@id": "bioschemastypesdrafts:sampleAvailability", + "@id": "bioschemastempdrafts:sampleAvailability", "@type": "rdf:Property", "rdfs:comment": "Indicate whether this resource is available for reuse.", "rdfs:label": "sampleAvailability", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Boolean" @@ -440,11 +440,11 @@ ] }, { - "@id": "bioschemastypesdrafts:accessConditions", + "@id": "bioschemastempdrafts:accessConditions", "@type": "rdf:Property", "rdfs:comment": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted.", "rdfs:label": "accessConditions", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -452,11 +452,11 @@ ] }, { - "@id": "bioschemastypesdrafts:ethics", + "@id": "bioschemastempdrafts:ethics", "@type": "rdf:Property", "rdfs:comment": "Indicate which ethics policies are associated with the sample.", "rdfs:label": "ethics", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -467,11 +467,11 @@ ] }, { - "@id": "bioschemastypesdrafts:scientificName", + "@id": "bioschemastempdrafts:scientificName", "@type": "rdf:Property", "rdfs:comment": "The full scientific name (order, family, subfamily, genus,specificEpithet).", "rdfs:label": "scientificName", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -479,11 +479,11 @@ ] }, { - "@id": "bioschemastypesdrafts:anatomicalSystem", + "@id": "bioschemastempdrafts:anatomicalSystem", "@type": "rdf:Property", "rdfs:comment": "An anatomical system is a group of anatomical structures that work together to perform a certain task. Can include circulatory, digestive, endocrine, immune and other systems", "rdfs:label": "anatomicalSystem", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalSystem" @@ -491,11 +491,11 @@ ] }, { - "@id": "bioschemastypesdrafts:organ", + "@id": "bioschemastempdrafts:organ", "@type": "rdf:Property", "rdfs:comment": "Anatomical structure that performs a specific function or group of function.", "rdfs:label": "organ", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalStructure" @@ -503,11 +503,11 @@ ] }, { - "@id": "bioschemastypesdrafts:tissue", + "@id": "bioschemastempdrafts:tissue", "@type": "rdf:Property", "rdfs:comment": "Indicate the tissue from which the sample was collected.", "rdfs:label": "tissue", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalStructure" @@ -515,11 +515,11 @@ ] }, { - "@id": "bioschemastypesdrafts:sex", + "@id": "bioschemastempdrafts:sex", "@type": "rdf:Property", "rdfs:comment": "The biological sex of the individual from which the sample was obtained.", "rdfs:label": "sex", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -527,11 +527,11 @@ ] }, { - "@id": "bioschemastypesdrafts:developmentalStage", + "@id": "bioschemastempdrafts:developmentalStage", "@type": "rdf:Property", "rdfs:comment": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.", "rdfs:label": "developmentalStage", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -539,11 +539,11 @@ ] }, { - "@id": "bioschemastypesdrafts:relationshipType", + "@id": "bioschemastempdrafts:relationshipType", "@type": "rdf:Property", "rdfs:comment": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont.", "rdfs:label": "relationshipType", - "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" From 344ff512781033ead5d9f7b1f02295831b52a094 Mon Sep 17 00:00:00 2001 From: gtsueng Date: Wed, 21 Feb 2024 07:49:58 -0800 Subject: [PATCH 06/11] Update BioSample_v0.2-DRAFT.jsonld --- BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld | 2 ++ 1 file changed, 2 insertions(+) diff --git a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld index 933def76..d70fa0b8 100644 --- a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld +++ b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld @@ -12,6 +12,8 @@ "@type": "rdfs:Class", "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Ginger Tsueng, Rita Monteiro and Joana Pauperio. Note, the property `funding` was originally added as `grant`, but was changed to for consistency with schema.org.", "rdfs:label": "BioSample", + "schema:additionalType":"https://bioschemas.org/types#nav-draft", + "schema:schemaVersion":"0.2-DRAFT", "rdfs:subClassOf": { "@id": "bioschemastypedrafts:Sample" }, From 3f322b5378297c37da4c0584c335cbdf861084b1 Mon Sep 17 00:00:00 2001 From: gtsueng Date: Wed, 21 Feb 2024 07:56:09 -0800 Subject: [PATCH 07/11] Update BioSample_v0.2-DRAFT.jsonld --- BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld index d70fa0b8..a3b10725 100644 --- a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld +++ b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld @@ -15,7 +15,7 @@ "schema:additionalType":"https://bioschemas.org/types#nav-draft", "schema:schemaVersion":"0.2-DRAFT", "rdfs:subClassOf": { - "@id": "bioschemastypedrafts:Sample" + "@id": "bioschemastypesdrafts:Sample" }, "schemaVersion": [ "https://schema.org/docs/releases.html#v23.0" From 0746bd8976342b97c7939a58f7c4251168b519a6 Mon Sep 17 00:00:00 2001 From: gtsueng Date: Wed, 21 Feb 2024 07:57:35 -0800 Subject: [PATCH 08/11] Update BioSample_v0.2-DRAFT.jsonld --- BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld | 1 - 1 file changed, 1 deletion(-) diff --git a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld index a3b10725..ef84f623 100644 --- a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld +++ b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld @@ -13,7 +13,6 @@ "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Ginger Tsueng, Rita Monteiro and Joana Pauperio. Note, the property `funding` was originally added as `grant`, but was changed to for consistency with schema.org.", "rdfs:label": "BioSample", "schema:additionalType":"https://bioschemas.org/types#nav-draft", - "schema:schemaVersion":"0.2-DRAFT", "rdfs:subClassOf": { "@id": "bioschemastypesdrafts:Sample" }, From 5e873ec86da9fb52dc371be9563770a6f635421d Mon Sep 17 00:00:00 2001 From: gtsueng Date: Wed, 21 Feb 2024 08:08:05 -0800 Subject: [PATCH 09/11] Update BioSample_v0.2-DRAFT.jsonld --- BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld index ef84f623..2a9c4ead 100644 --- a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld +++ b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld @@ -16,7 +16,7 @@ "rdfs:subClassOf": { "@id": "bioschemastypesdrafts:Sample" }, - "schemaVersion": [ + "schema:schemaVersion": [ "https://schema.org/docs/releases.html#v23.0" ] }, From 77b677f49196964acd9a38f9b5b23d539723f000 Mon Sep 17 00:00:00 2001 From: gtsueng Date: Wed, 21 Feb 2024 08:15:44 -0800 Subject: [PATCH 10/11] Update BioSample_v0.2-DRAFT.jsonld --- BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld | 6 ------ 1 file changed, 6 deletions(-) diff --git a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld index 2a9c4ead..a0a1e130 100644 --- a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld +++ b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld @@ -296,9 +296,6 @@ "schema:rangeIncludes": [ { "@id": "schema:QualitativeValue" - }, - { - "@id": "" } ] }, @@ -461,9 +458,6 @@ "schema:rangeIncludes": [ { "@id": "schema:Text" - }, - { - "@id": "" } ] }, From 075794628843a46fc9a534431201e667e27fd759 Mon Sep 17 00:00:00 2001 From: gtsueng Date: Wed, 21 Feb 2024 08:17:22 -0800 Subject: [PATCH 11/11] Update BioSample_v0.2-DRAFT.jsonld --- .../jsonld/type/BioSample_v0.2-DRAFT.jsonld | 165 +++++++++--------- 1 file changed, 82 insertions(+), 83 deletions(-) diff --git a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld index a0a1e130..4801a1bf 100644 --- a/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld +++ b/BioSample/jsonld/type/BioSample_v0.2-DRAFT.jsonld @@ -3,12 +3,11 @@ "schema": "http://schema.org/", "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", - "bioschemastypesdrafts": "https://discovery.biothings.io/view/bioschemastypesdrafts/", - "bioschemastempdrafts": "https://discovery.biothings.io/view/bioschemastempdrafts/" + "bioschemastypesdrafts": "https://discovery.biothings.io/view/bioschemastypesdrafts/" }, "@graph": [ { - "@id": "bioschemastempdrafts:BioSample", + "@id": "bioschemastypesdrafts:BioSample", "@type": "rdfs:Class", "rdfs:comment": "A biological material entity that is representative of a whole.\\nComments: Typically samples are intended to be representative of the whole or aspects thereof. Examples of samples include biomedical samples (blood, urine) and plant specimens held at herbaria.\\n\\nVersion: 0.2 \\ncreated by Nick Juty, Sara El-Gebali, Leyla Jael Castro, Helena Schnitzer, Alban Gaignard, Ginger Tsueng, Rita Monteiro and Joana Pauperio. Note, the property `funding` was originally added as `grant`, but was changed to for consistency with schema.org.", "rdfs:label": "BioSample", @@ -21,11 +20,11 @@ ] }, { - "@id": "bioschemastempdrafts:dateCollected", + "@id": "bioschemastypesdrafts:dateCollected", "@type": "rdf:Property", "rdfs:comment": "The date on which the sample was collected.", "rdfs:label": "dateCollected", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -36,11 +35,11 @@ ] }, { - "@id": "bioschemastempdrafts:datePublished", + "@id": "bioschemastypesdrafts:datePublished", "@type": "rdf:Property", "rdfs:comment": "The date when the record of the sample will be made publicly available.", "rdfs:label": "datePublished", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -51,11 +50,11 @@ ] }, { - "@id": "bioschemastempdrafts:submitter", + "@id": "bioschemastypesdrafts:submitter", "@type": "rdf:Property", "rdfs:comment": "The person or organization that registers the sample. ", "rdfs:label": "submitter", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -66,11 +65,11 @@ ] }, { - "@id": "bioschemastempdrafts:maintainer", + "@id": "bioschemastypesdrafts:maintainer", "@type": "rdf:Property", "rdfs:comment": "The Person or Organization who is responsible for the Sample.", "rdfs:label": "maintainer", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -81,11 +80,11 @@ ] }, { - "@id": "bioschemastempdrafts:contributor", + "@id": "bioschemastypesdrafts:contributor", "@type": "rdf:Property", "rdfs:comment": "Person or organization that contributes to the work.", "rdfs:label": "contributor", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -96,11 +95,11 @@ ] }, { - "@id": "bioschemastempdrafts:longitude", + "@id": "bioschemastypesdrafts:longitude", "@type": "rdf:Property", "rdfs:comment": "The longitude from which the sample was originally collected. ", "rdfs:label": "longitude", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -108,11 +107,11 @@ ] }, { - "@id": "bioschemastempdrafts:elevation", + "@id": "bioschemastypesdrafts:elevation", "@type": "rdf:Property", "rdfs:comment": "The altitude from which the sample was originally collected. ", "rdfs:label": "elevation", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -120,11 +119,11 @@ ] }, { - "@id": "bioschemastempdrafts:latitude", + "@id": "bioschemastypesdrafts:latitude", "@type": "rdf:Property", "rdfs:comment": "The latitude from which the sample was originally collected. ", "rdfs:label": "latitude", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -132,11 +131,11 @@ ] }, { - "@id": "bioschemastempdrafts:depth", + "@id": "bioschemastypesdrafts:depth", "@type": "rdf:Property", "rdfs:comment": "The extent downward or inward from the surface from which the sample was originally collected. ", "rdfs:label": "depth", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QuantitativeValue" @@ -144,11 +143,11 @@ ] }, { - "@id": "bioschemastempdrafts:locationOfOrigin", + "@id": "bioschemastypesdrafts:locationOfOrigin", "@type": "rdf:Property", "rdfs:comment": "The location from which the sample was originally collected.", "rdfs:label": "locationOfOrigin", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:GeoCoordinates" @@ -156,11 +155,11 @@ ] }, { - "@id": "bioschemastempdrafts:dateModified", + "@id": "bioschemastypesdrafts:dateModified", "@type": "rdf:Property", "rdfs:comment": "Date sample record was last updated.", "rdfs:label": "dateModified", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -171,11 +170,11 @@ ] }, { - "@id": "bioschemastempdrafts:keywords", + "@id": "bioschemastypesdrafts:keywords", "@type": "rdf:Property", "rdfs:comment": "Terms that capture the main subjects e.g. cancer, plant biology.", "rdfs:label": "keywords", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -183,11 +182,11 @@ ] }, { - "@id": "bioschemastempdrafts:alternateIdentifier", + "@id": "bioschemastypesdrafts:alternateIdentifier", "@type": "rdf:Property", "rdfs:comment": "An additional identifier for the same instance of the resource. ", "rdfs:label": "alternateIdentifier", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -195,11 +194,11 @@ ] }, { - "@id": "bioschemastempdrafts:contactPoint", + "@id": "bioschemastypesdrafts:contactPoint", "@type": "rdf:Property", "rdfs:comment": "Person or organization that can be contacted for more information or support. ", "rdfs:label": "contactPoint", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Person" @@ -210,11 +209,11 @@ ] }, { - "@id": "bioschemastempdrafts:environmentalSystem", + "@id": "bioschemastypesdrafts:environmentalSystem", "@type": "rdf:Property", "rdfs:comment": "A category or description of the habitat that describes elements of an ecosystem where the sample was collected.", "rdfs:label": "environmentalSystem", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -222,11 +221,11 @@ ] }, { - "@id": "bioschemastempdrafts:sampleQuantity", + "@id": "bioschemastypesdrafts:sampleQuantity", "@type": "rdf:Property", "rdfs:comment": "A numeric value for a measurement of the size of a sample.", "rdfs:label": "sampleQuantity", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QuantitativeValue" @@ -234,11 +233,11 @@ ] }, { - "@id": "bioschemastempdrafts:processingDate", + "@id": "bioschemastypesdrafts:processingDate", "@type": "rdf:Property", "rdfs:comment": "The date the sample was processed or used in a method.", "rdfs:label": "processingDate", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Date" @@ -249,11 +248,11 @@ ] }, { - "@id": "bioschemastempdrafts:sampleState", + "@id": "bioschemastypesdrafts:sampleState", "@type": "rdf:Property", "rdfs:comment": "Specify the composition and state of the sample, indicating which form it exisits in, e.g. gas, liquid, solid.", "rdfs:label": "sampleState", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -261,11 +260,11 @@ ] }, { - "@id": "bioschemastempdrafts:sampleType", + "@id": "bioschemastypesdrafts:sampleType", "@type": "rdf:Property", "rdfs:comment": "Indicate the type of sample", "rdfs:label": "sampleType", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -276,11 +275,11 @@ ] }, { - "@id": "bioschemastempdrafts:collectionMethod", + "@id": "bioschemastypesdrafts:collectionMethod", "@type": "rdf:Property", "rdfs:comment": "Provide information about the conditions and methods of acquisition of samples. ", "rdfs:label": "collectionMethod", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -288,11 +287,11 @@ ] }, { - "@id": "bioschemastempdrafts:sampleStorageTemperature", + "@id": "bioschemastypesdrafts:sampleStorageTemperature", "@type": "rdf:Property", "rdfs:comment": "Storage condition of the sample.", "rdfs:label": "sampleStorageTemperature", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:QualitativeValue" @@ -300,11 +299,11 @@ ] }, { - "@id": "bioschemastempdrafts:sampleProcess", + "@id": "bioschemastypesdrafts:sampleProcess", "@type": "rdf:Property", "rdfs:comment": "The processing technique that was applied to the sample, methods used to prepare the samples.", "rdfs:label": "sampleProcess", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -312,11 +311,11 @@ ] }, { - "@id": "bioschemastempdrafts:experimentalPurpose", + "@id": "bioschemastypesdrafts:experimentalPurpose", "@type": "rdf:Property", "rdfs:comment": "Describe the planned or executed experimental procedures involving the samples.", "rdfs:label": "experimentalPurpose", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -324,11 +323,11 @@ ] }, { - "@id": "bioschemastempdrafts:instrument", + "@id": "bioschemastypesdrafts:instrument", "@type": "rdf:Property", "rdfs:comment": "Provide description of instruments and devices used.", "rdfs:label": "instrument", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -339,11 +338,11 @@ ] }, { - "@id": "bioschemastempdrafts:funding", + "@id": "bioschemastypesdrafts:funding", "@type": "rdf:Property", "rdfs:comment": "Provide funding information.", "rdfs:label": "funding", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Grant" @@ -351,11 +350,11 @@ ] }, { - "@id": "bioschemastempdrafts:project", + "@id": "bioschemastypesdrafts:project", "@type": "rdf:Property", "rdfs:comment": "Information on the project.", "rdfs:label": "project", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:ResearchProject" @@ -363,11 +362,11 @@ ] }, { - "@id": "bioschemastempdrafts:relatedItem", + "@id": "bioschemastypesdrafts:relatedItem", "@type": "rdf:Property", "rdfs:comment": "Describe related items including other resources related to the samples.", "rdfs:label": "relatedItem", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Dataset" @@ -387,11 +386,11 @@ ] }, { - "@id": "bioschemastempdrafts:isDescribedBy", + "@id": "bioschemastypesdrafts:isDescribedBy", "@type": "rdf:Property", "rdfs:comment": "List publications where the sample is mentioned or described.", "rdfs:label": "isDescribedBy", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Article" @@ -399,11 +398,11 @@ ] }, { - "@id": "bioschemastempdrafts:studyTitle", + "@id": "bioschemastypesdrafts:studyTitle", "@type": "rdf:Property", "rdfs:comment": "Title of the study the samples belong to", "rdfs:label": "studyTitle", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -411,11 +410,11 @@ ] }, { - "@id": "bioschemastempdrafts:studyID", + "@id": "bioschemastypesdrafts:studyID", "@type": "rdf:Property", "rdfs:comment": "Indicate the study ID.", "rdfs:label": "studyID", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -426,11 +425,11 @@ ] }, { - "@id": "bioschemastempdrafts:sampleAvailability", + "@id": "bioschemastypesdrafts:sampleAvailability", "@type": "rdf:Property", "rdfs:comment": "Indicate whether this resource is available for reuse.", "rdfs:label": "sampleAvailability", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Boolean" @@ -438,11 +437,11 @@ ] }, { - "@id": "bioschemastempdrafts:accessConditions", + "@id": "bioschemastypesdrafts:accessConditions", "@type": "rdf:Property", "rdfs:comment": "Sample access statement outlining conditions/requirements need to be fulfilled before access to the sample is granted.", "rdfs:label": "accessConditions", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -450,11 +449,11 @@ ] }, { - "@id": "bioschemastempdrafts:ethics", + "@id": "bioschemastypesdrafts:ethics", "@type": "rdf:Property", "rdfs:comment": "Indicate which ethics policies are associated with the sample.", "rdfs:label": "ethics", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -462,11 +461,11 @@ ] }, { - "@id": "bioschemastempdrafts:scientificName", + "@id": "bioschemastypesdrafts:scientificName", "@type": "rdf:Property", "rdfs:comment": "The full scientific name (order, family, subfamily, genus,specificEpithet).", "rdfs:label": "scientificName", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -474,11 +473,11 @@ ] }, { - "@id": "bioschemastempdrafts:anatomicalSystem", + "@id": "bioschemastypesdrafts:anatomicalSystem", "@type": "rdf:Property", "rdfs:comment": "An anatomical system is a group of anatomical structures that work together to perform a certain task. Can include circulatory, digestive, endocrine, immune and other systems", "rdfs:label": "anatomicalSystem", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalSystem" @@ -486,11 +485,11 @@ ] }, { - "@id": "bioschemastempdrafts:organ", + "@id": "bioschemastypesdrafts:organ", "@type": "rdf:Property", "rdfs:comment": "Anatomical structure that performs a specific function or group of function.", "rdfs:label": "organ", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalStructure" @@ -498,11 +497,11 @@ ] }, { - "@id": "bioschemastempdrafts:tissue", + "@id": "bioschemastypesdrafts:tissue", "@type": "rdf:Property", "rdfs:comment": "Indicate the tissue from which the sample was collected.", "rdfs:label": "tissue", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:AnatomicalStructure" @@ -510,11 +509,11 @@ ] }, { - "@id": "bioschemastempdrafts:sex", + "@id": "bioschemastypesdrafts:sex", "@type": "rdf:Property", "rdfs:comment": "The biological sex of the individual from which the sample was obtained.", "rdfs:label": "sex", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -522,11 +521,11 @@ ] }, { - "@id": "bioschemastempdrafts:developmentalStage", + "@id": "bioschemastypesdrafts:developmentalStage", "@type": "rdf:Property", "rdfs:comment": "A temporal subdivision of a developmental process, indicating the age or stage of the object when the sample was created.", "rdfs:label": "developmentalStage", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text" @@ -534,11 +533,11 @@ ] }, { - "@id": "bioschemastempdrafts:relationshipType", + "@id": "bioschemastypesdrafts:relationshipType", "@type": "rdf:Property", "rdfs:comment": "Describe the relationship to other entities or organisms e.g. parent, sibling, symbiont.", "rdfs:label": "relationshipType", - "schema:domainIncludes": {"@id": "bioschemastempdrafts:BioSample"}, + "schema:domainIncludes": {"@id": "bioschemastypesdrafts:BioSample"}, "schema:rangeIncludes": [ { "@id": "schema:Text"