diff --git a/.buildinfo b/.buildinfo new file mode 100644 index 0000000..af96ef5 --- /dev/null +++ b/.buildinfo @@ -0,0 +1,4 @@ +# Sphinx build info version 1 +# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. +config: b94ba4cfafdf005d4fd48bd8782189e9 +tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle new file mode 100644 index 0000000..8bae94c Binary files /dev/null and b/.doctrees/environment.pickle differ diff --git a/.doctrees/index.doctree b/.doctrees/index.doctree new file mode 100644 index 0000000..8b3d405 Binary files /dev/null and b/.doctrees/index.doctree differ diff --git a/.nojekyll b/.nojekyll new file mode 100644 index 0000000..e69de29 diff --git a/_images/Pasted-Graphic.png b/_images/Pasted-Graphic.png new file mode 100644 index 0000000..e34851d Binary files /dev/null and b/_images/Pasted-Graphic.png differ diff --git a/_modules/amworkflow/gcode/gcode.html b/_modules/amworkflow/gcode/gcode.html new file mode 100644 index 0000000..93cb9b5 --- /dev/null +++ b/_modules/amworkflow/gcode/gcode.html @@ -0,0 +1,1361 @@ + + + + + + amworkflow.gcode.gcode — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + +
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Source code for amworkflow.gcode.gcode

+import csv
+import logging
+import os
+import re
+import sys
+import typing
+from datetime import datetime, timedelta
+from pathlib import Path
+
+import matplotlib.pyplot as plt
+import numpy as np
+from matplotlib.patches import Rectangle
+
+import amworkflow.gcode.printer_config as printer_config
+from amworkflow.config.settings import ROOT_PATH
+from amworkflow.geometry import builtinCAD as bcad
+
+# import stltovoxel
+# import pyvista as pv
+
+typing.override = lambda x: x
+
+
+
+[docs] +class Gcode: + """Base class with API for any gcode writer.""" + + def __init__(self, *args, **kwargs) -> None: + self.logger = logging.getLogger(__name__ + "." + self.__class__.__name__) + +
+[docs] + @typing.override + def create(self, in_file: Path, out_gcode: Path) -> None: + """Create gcode file by given path file or geometry file + + Args: + in_file: File path to path point file or stl file from geometry step + out_gcode File path of output gcode file. + + Returns: + + """ + raise NotImplementedError
+ + +
+[docs] + def load_standard(self, standard: str = None): + """Load standard config file + + :param standard: defaults to None + + """ + directory = os.path.join(ROOT_PATH, "amworkflow/gcode/config") + config_list_no_ext = [ + os.path.splitext(file)[0] for file in os.listdir(directory) + ] + assert standard is not None, "Standard is not defined." + + if standard not in config_list_no_ext: + raise ValueError(f"{standard} does not exist.") + config = printer_config.read_config(directory + "/" + standard + ".yaml") + # logging.info(f"Load config {standard}") + self.logger.info(f"Load config {standard}") + for state in printer_config.PrintState: + if state.name in config: + setattr(self, state.name, config[state.name])
+
+ + + +
+[docs] +class PowderbedCodeFromSTL(Gcode): + """Print instructions writer from stl file""" + + def __init__( + self, + standard: str = "PowderBedBAM", + in_file_path: str = None, + stl_unit: float = 1, + debug_mode: bool = False, + add_zeros: int = 0, + **kwargs, + ) -> None: + # Unit of the geometry + self.standard = standard + # Path to the input file + self.in_file_path = in_file_path + # units of your STL-file (how much of your unit is 1m, mm would be 1000) + self.stl_unit = stl_unit + # if True, prints extra stuff into dsmn-file + self.debug_mode = debug_mode + # additional zeros at the top and bottom of each layer in dsmn-file + self.add_zeros = add_zeros + + super().__init__(**kwargs) + + # Standard of the printer firmware + # Careful, the file "printer_config.py" also has to be changed whenever parameters in the config are added/removed + self.load_standard(self.standard) + +
+[docs] + def create( + self, in_file: Path, out_dsmn: Path, out_xyz: Path, out_dsmn_dir: Path = None + ) -> None: + """Create dsmn printer instructions file by given stl file + + Args: + in_file: File path to path point file + out_dsmn: Name of output dsmn file. + out_xyz: Name of output xyz file. + out_dsmn_dir: Directory of output dsmn file. If not given, One output folder will be created in the root directory of the project. + + Returns: + + """ + + ### Recalculate parameters + self.RecoaterClosingPositionLaying = np.floor(self.PrinterX * 1000) + 100 + self.RecoaterClosingPositionPrinting = np.floor(self.PrinterX * 1000) + 200 + self.VoxelDimY = self.PrinterY / self.NozzleNum + self.VoxelDimX = self.VoxelDimY + self.VoxelDimZ = self.VoxelDimY + + ### creating of paths for various stuff + stl_name, stl_fileending = os.path.splitext(os.path.basename(in_file)) + # working_folder = os.getcwd() + + recipe_name = "DSMR-" + stl_name + stl_fileending + + if out_dsmn_dir is None: + current_directory = os.getcwd() + root_directory = os.path.dirname(current_directory) + out_dsmn_dir = os.path.join(current_directory, "output") + + if not os.path.exists(out_dsmn_dir): + os.makedirs(out_dsmn_dir) + out_dsmn_dir = Path(out_dsmn_dir) + out_log = f"log_{stl_name}.txt" + log_file_path = out_dsmn_dir / out_log + + #### + ### Convert to xyz file (one file total) + # out = stltovoxel.convert_file(in_file, out_xyz, voxel_size = self.VoxelDimY*self.stl_unit, parallel = False) + + ### Load xyz file for further processing + # Read xyz file and parse coordinates + with open(out_xyz, "r") as file: + lines = file.readlines() + + # Extract x, y, z coordinates from each line + coordinates = [list(map(float, line.strip().split())) for line in lines] + + # Convert coordinates to a NumPy array + voxel_array = np.array(coordinates) / self.stl_unit + + # Find unique values and sort ascending (1st col: x, 2nd col: y, 3rd col: z) + unique_x = np.unique(voxel_array[:, 0]) + unique_y = np.unique(voxel_array[:, 1]) + unique_z = np.unique(voxel_array[:, 2]) + + # Get real voxel dimension produced by stl2voxel + sorted_x_temp = np.sort(unique_x) + sliced_voxel_dim_x = sorted_x_temp[1] - sorted_x_temp[0] + sorted_y_temp = np.sort(unique_y) + sliced_voxel_dim_y = sorted_y_temp[1] - sorted_y_temp[0] + sorted_z_temp = np.sort(unique_z) + sliced_voxel_dim_z = sorted_z_temp[1] - sorted_z_temp[0] + + # Create arrays for dimensions, adding small offset to stop-value, because it may not be included + sorted_x = np.arange( + np.min(unique_x), + np.max(unique_x) + 0.01 * self.VoxelDimX, + sliced_voxel_dim_x, + ) + sorted_y = np.arange( + np.min(unique_y), + np.max(unique_y) + 0.01 * self.VoxelDimY, + sliced_voxel_dim_y, + ) + sorted_z = np.arange( + np.min(unique_z), + np.max(unique_z) + 0.01 * self.VoxelDimZ, + sliced_voxel_dim_z, + ) + + # Prepare array + voxel_3d_array = np.zeros( + (sorted_x.shape[0], sorted_y.shape[0], sorted_z.shape[0]) + ) + + # Sort ones where a coordinate exists into 3d array + for i, row in enumerate(voxel_array): + + x_index = np.argmin(np.abs(sorted_x - row[0])) + y_index = np.argmin(np.abs(sorted_y - row[1])) + z_index = np.argmin(np.abs(sorted_z - row[2])) + + voxel_3d_array[x_index, y_index, z_index] = 1 + + # Calculate optimized printer_x and lines_num for less printing duration, also recoater values + self.PrinterX = (voxel_3d_array.shape[1] + 2 * self.add_zeros) * self.VoxelDimX + self.LinesNum = voxel_3d_array.shape[1] + 2 * self.add_zeros + self.RecoaterClosingPositionLaying = np.floor(self.PrinterX * 1000) + 100 + self.RecoaterClosingPositionPrinting = np.floor(self.PrinterX * 1000) + 200 + + ### Write header - printer parameters + with open(out_dsmn, "w") as file: + file.write(recipe_name + "\n") + file.write(self.PrinterName + "\n") + file.write(str(self.VoxelDimY * 1000) + "\n") + file.write(str(self.PrinterY * 1000) + "\n") + file.write(str(self.VoxelDimX * 1000) + "\n") + file.write(str(np.round(self.PrinterX * 1000, 1)) + "\n") + file.write(str(self.NozzleOpen) + "\n") + file.write(str(self.NozzleNum) + "\n") + file.write(str(self.VoxelDimZ * 1000) + "\n") + file.write(str(self.PrinterZ * 1000) + "\n") + file.write(str(self.PrintSpeedX) + "\n") + file.write(str(self.PrintSpeedY) + "\n") + file.write(str(self.PrintSpeedZ) + "\n") + file.write(str(self.LayingSpeedX) + "\n") + file.write(str(self.ManualSpeedX) + "\n") + file.write(str(self.ManualSpeedY) + "\n") + file.write(str(self.ManualSpeedZ) + "\n") + file.write(str(self.LinesNum) + "\n") + file.write(str(self.LayerNumMax) + "\n") + file.write(str(self.DeltaExtraPlaneEnd) + "\n") + file.write(str(self.VoxelRaiseBeforeLaying) + "\n") + file.write(str(self.VoxelRaiseBeforePrinting) + "\n") + file.write(str(self.DeltaExtraPlaneStart) + "\n") + file.write(str(self.RecoaterOpeningPositionLaying) + "\n") + file.write(str(self.RecoaterClosingPositionLaying) + "\n") + file.write(str(self.RecoaterOpeningPositionPrinting) + "\n") + file.write(str(self.RecoaterClosingPositionPrinting) + "\n") + file.write(str(self.RecoaterOpenCloseSpeed) + "\n") + file.write(str(self.RecoaterHoleOpening) + "\n") + file.write(str(self.LumpBreakerPowder) + "\n") + file.write(str(self.MinLiquid1LevelRange1To7) + "\n") + file.write(str(self.MaxLiquid1LevelRange1To7) + "\n") + file.write(str(self.MinLiquid2LevelRange1To7) + "\n") + file.write(str(self.MaxLiquid2LevelRange1To7) + "\n") + file.write( + "\n" * 67 + ) # Values from 34 to 100 are not existant, therefore empty lines + + ### Write body - voxel to hex + # Check if there are more voxels along x than nozzles + if voxel_3d_array.shape[0] > self.NozzleNum: + raise ValueError( + f"{voxel_3d_array.shape[0]} x-voxels to only {self.NozzleNum} nozzles, rescale model to fit within printer width of {self.PrinterY}m" + ) + # Check if 4 bit to hex encoding possible + if self.NozzleNum % 4 != 0: + raise ValueError( + "Number of nozzles not a multiple of 4, 4bit to hex encoding not possible" + ) + + # Prepare array + printerbed_3d_array = np.zeros( + (self.NozzleNum, self.LinesNum, sorted_z.shape[0]) + ) + + # Sort into temporary array + for ii in range(voxel_3d_array.shape[2]): + # Position smaller prints into larger printer bed, roughly in the middle + A_large = printerbed_3d_array[:, :, ii] + A_small = voxel_3d_array[:, :, ii] + start_row = (A_large.shape[0] - A_small.shape[0]) // 2 + start_col = (A_large.shape[1] - A_small.shape[1]) // 2 + + A_large[ + start_row : start_row + A_small.shape[0], + start_col : start_col + A_small.shape[1], + ] = A_small + printerbed_3d_array[:, :, ii] = A_large + + # Print the actual dsmn-file + for layers in range(printerbed_3d_array.shape[2]): + printer_hex = [] + temp_array = np.transpose(printerbed_3d_array[:, :, layers]) + + for row in temp_array: + # Partitioning of rows in parts of length 4 + chunks = [row[i : i + 4] for i in range(0, len(row), 4)] + + # Convert every chunk into binary number and then into hex number + hex_values = [ + hex(int("".join(map(str, chunk.astype(int))), 2))[2:].upper() + for chunk in chunks + ] + + # Combine hex numbers + printer_hex.append(hex_values) + + with open(out_dsmn, "a") as file: + for hex_values in printer_hex: + file.write("".join(hex_values) + "\n") + if self.debug_mode: + file.write( + "-" * (int(self.NozzleNum / 4)) + "\n" + ) # line separator between layers + + # # Visualize voxels with pyvista + # def visualize_voxels(voxel_centers): + + # # Create a point cloud representation + # point_cloud = pv.PolyData(voxel_centers) #pv.PointCloud(voxel_polydata) + + # # Plot the point cloud using pyvista plotter + # point_cloud.plot(eye_dome_lighting=True) + # visualize_voxels(voxel_array) + + ### Print some data for the user to file + out_log = f"log_{out_dsmn.stem}.log" + log_file_path = out_dsmn.parent / out_log + params_log = { + "tot_voxel_num": np.count_nonzero(voxel_3d_array), + "tot_voxel_volume": np.count_nonzero(voxel_3d_array) + * self.VoxelDimX + * self.VoxelDimY + * self.VoxelDimZ, + "tot_num_layers": unique_z.shape[0], + "target_deviation": 0.05, + "sliced_voxel_dim_x": sliced_voxel_dim_x, + "sliced_voxel_dim_y": sliced_voxel_dim_y, + "sliced_voxel_dim_z": sliced_voxel_dim_z, + } + + self.write_log(log_file_path, params_log)
+ + + def write_log(self, filename: str, params_log): + with open(filename, "w") as f: + print("-- Printing and slicing statistics --", file=f) + # Number of voxels + print(f"Number of voxels: {params_log['tot_voxel_num']}", file=f) + # Total voxel volume + print( + f"Print volume: {params_log['tot_voxel_volume']*1000:.3f} liters", + file=f, + ) + # Number of layers + print(f"Number of layers: {params_log['tot_num_layers']}", file=f) + # Requested voxel dimensions + print("Requested voxel dimensions:", file=f) + print(f"\t x: {self.VoxelDimX*1000:.3f} mm", file=f) + print(f"\t y: {self.VoxelDimY*1000:.3f} mm", file=f) + print(f"\t z: {self.VoxelDimZ*1000:.3f} mm", file=f) + # Actual voxel dimensions + warning_x = "" + warning_y = "" + warning_z = "" + if ( + np.abs(1 - params_log["sliced_voxel_dim_x"] / self.VoxelDimX) + > params_log["target_deviation"] + ): + warning_x = " \t -> Voxel size deviation threshold reached" + if ( + np.abs(1 - params_log["sliced_voxel_dim_y"] / self.VoxelDimY) + > params_log["target_deviation"] + ): + warning_y = " \t -> Voxel size deviation threshold reached" + if ( + np.abs(1 - params_log["sliced_voxel_dim_z"] / self.VoxelDimZ) + > params_log["target_deviation"] + ): + warning_z = " \t -> Voxel size deviation threshold reached" + print("Actual voxel dimensions:", file=f) + print( + f"\t x: {params_log['sliced_voxel_dim_x']*1000:.3f} mm" + warning_x, + file=f, + ) + print( + f"\t y: {params_log['sliced_voxel_dim_y']*1000:.3f} mm" + warning_y, + file=f, + ) + print( + f"\t z: {params_log['sliced_voxel_dim_z']*1000:.3f} mm" + warning_z, + file=f, + )
+ + + +
+[docs] +class GcodeFromPoints(Gcode): + """Gcode writer from path points.""" + + def __init__( + self, + layer_num: float = 1, + layer_height: float = 1, + line_width: float = 1, + offset_from_origin: np.ndarray | bool = None, + unit: str = "mm", + standard: str = "ConcretePrinter", # TU Berlin ConcretePrinter, BAM ConcretePrinter_BAM !! + coordinate_system: str = "absolute", + nozzle_diameter: float = 0.4, + kappa: float = 1, # to compute extrusion only for TU printer + gamma: float = -1, + delta: float = 1, + tool_number: int = 0, + feedrate: int = 1800, + fixed_feedrate: bool = False, + pumpspeed: float = None, # precentage of pumpspeed only for BAM printer + rotate: bool = False, + density: float = 1, + ramp: bool = False, + **kwargs, + ) -> None: + self.line_width = line_width + # Width of the line + self.layer_num = layer_num + # Number of layers either number and height with point in x-y or points are given in x,y,z + self.layer_height = layer_height + # Layer height + self.unit = unit + # Unit of the geometry + self.standard = standard + # Standard of the printer firmware + self.coordinate_system = coordinate_system + # Coordinate system of the printer firmware + self.nozzle_diameter = nozzle_diameter + # Diameter of the nozzle + self.nozzle_area = 0.25 * np.pi * self.nozzle_diameter**2 + # Area of the nozzle + self.kappa = kappa + # Coefficient of rectifying the extrusion length + self.gamma = gamma + # Coefficient of rectifying the feedrate, as well as the line width + self.delta = delta + # Coefficient of rectifying the feedrate, as well as the line width + self.tool_number = tool_number + # Tool number + self.feedrate = feedrate + # Feed rate will be calculated if fixed_feedrate is False + self.fixed_feedrate = fixed_feedrate + # switch of fixed feedrate (default False) + self.pumpspeed = pumpspeed + # pumpspeed for BAM printer in percentage to control extrusion + self.density = density + # Density of the material + self.offset_from_origin = offset_from_origin + # Offset of the points + self.print_length = 0 + # Length of the print + self.material_consumption = 0 + # Material consumption + self.time_consumption = 0 + # Time consumption + self.timedelta = 0 + # Time delta + self.points_t = [] + # Transposed points + self.bbox = [] + # Bounding box of the points + self.bbox_length = 0 + # Length of the bounding box + self.bbox_width = 0 + # Width of the bounding box + self.gcode = [] + # Container of gcode + self.points = [] + # Container of points + self.rotate = rotate + # rotate the model in 90 degree + self.extrusion_tracker = [] + # Container of extrusion logs + self.diff_geo_per_layer = False + # switch of different geometry per layer, + self.ramp = ramp + # switch on ramping movement z included in x-y movement + + super().__init__(self.standard, **kwargs) + + self.load_standard(standard) # function from base class + +
+[docs] + def head_tail(self): + """create container of header and tail of gcode depending on selected standard""" + if self.standard == "ConcretePrinter": + self.header = [ + self.Absolute, + self.ExtruderAbsolute, + self.set_fanspeed(0), + self.set_tool(0), + ] + # Container of header of gcode + self.tail = [self.ExtruderOFF, self.FanOFF, self.MotorOFF] + elif self.standard == "ConcretePrinter_BAM": + # used examples from Anthony for header and tail + self.header = [ + f"{self.LinearMove} {self.SetFeedRate}14000 {self.SetZ}500", + f"{self.LinearMove} {self.SetX}100 {self.SetY}1160", + f"{self.LinearMove} {self.SetZ}200", + self.SpindleOn, + self.Pause, + self.SpindleOff, + f"{self.LinearMove} {self.SetZ}500", + ] + self.tail = [ + self.SpindleOff, + f"{self.LinearMove} {self.SetFeedRate}14000 {self.SetZ}500", + f"{self.LinearMove} {self.SetX}100 {self.SetY}1160", + f"{self.LinearMove} {self.SetZ}200", + self.SpindleOn, + ] + else: + self.header = [] + self.tail = []
+ + +
+[docs] + def create(self, in_file: Path, out_gcode: Path = None) -> None: + """Create gcode file by given path point file plus additional log_file + + Args: + in_file: File path to path point file + out_gcode: File path to gcode file. + + Returns: + + """ + assert in_file.is_file(), f"File {in_file} does not exist." + + if out_gcode is None: + assert ValueError("Output gcode file is not defined.") + + self.read_points(in_file) + + self.head_tail() + + self.init_gcode() + + if self.layer_num == "given by file": + # points include full path/all layers + self.gcode.append(f";==========Layers==========\n") + coordinates = self.points + coordinates = np.round(np.vstack((coordinates, coordinates[0])), 5) + if self.standard == "ConcretePrinter": # TU printer needs extrusion info + E = 0 # TODO compute extrusion for that case + for j, coord in enumerate(coordinates): + self.move(coord, e=np.round(E, 5), f=self.feedrate) + elif ( + self.standard == "ConcretePrinter_BAM" + ): # BAM printer needs no extrusion info + for j, coord in enumerate(coordinates): + if j == 0: # first point differently + self.move([coord[0], coord[1]], f=self.feedrate) + self.elevate(coord[-1]) + self.gcode.append(self.SpindleOn + "\n") # for BAM printer + else: + self.move(coord, f=self.feedrate, s=self.pumpspeed) + else: + # repeat on given layer for the given layer number and z accoring layer height + z = 0 + for i in range(self.layer_num): + self.gcode.append(f";==========Layer {i+1}==========\n") + + z += self.layer_height + coordinates = self.points + coordinates = np.round(np.vstack((coordinates, coordinates[0])), 5) + + if not self.ramp: + self.elevate(z) # stepping + + if self.standard == "ConcretePrinter": + self.reset_extrusion() # for TU printer + elif self.standard == "ConcretePrinter_BAM": + if i == 0: + self.move(coordinates[0], f=self.feedrate) + self.elevate(z) # stepping + self.gcode.append(self.SpindleOn + "\n") # for BAM printer + + if ( + self.standard == "ConcretePrinter" + ): # TU printer needs extrusion info + E = 0 + for j, coord in enumerate(coordinates): + if i == 0 and j == 0: + extrusion_length = self.compute_extrusion( + coord, np.zeros_like(coord) + ) + else: + extrusion_length = ( + self.compute_extrusion(coord, coordinates[j - 1]) + if j > 0 + else 0 + ) + E += extrusion_length + if self.ramp: + coord = list(coord) + [z] # ramping in z direction + self.move(coord, e=np.round(E, 5), f=self.feedrate) + elif ( + self.standard == "ConcretePrinter_BAM" + ): # BAM printer needs no extrusion info + for j, coord in enumerate(coordinates): + if self.ramp: + coord = list(coord) + [z] # ramping in z direction + + if i == 0 and j == 0: + self.logger.info("start with second point here") + else: + self.move(coord, f=self.feedrate, s=self.pumpspeed) + + self.write_gcode(out_gcode, self.gcode) + out_log = f"log_{out_gcode.stem}.csv" + log_file_path = out_gcode.parent / out_log + self.write_log_file(log_file_path)
+ + +
+[docs] + def compute_extrusion(self, p0: list, p1: list): + """Compute the extrusion length. rectify the extrusion length by the kappa factor. + + :param p0: The previous point + :type p0: list + :param p1: The current point + :type p1: list + :return: The extrusion length + :rtype: float + """ + self.nozzle_area = 0.25 * np.pi * self.nozzle_diameter**2 + L = np.linalg.norm(p0 - p1) + E = np.round(L * self.line_width * self.layer_height / self.nozzle_area, 4) + if self.kappa == 0: + logging.warning("Kappa is zero, set to 1") + self.kappa = 1 + rect_E = E / self.kappa + self.log_consumption(L, self.feedrate, E) + return rect_E
+ + + def log_consumption(self, dist, speed, material_consumption): + time_consumption = dist / (speed / 60) + volume = material_consumption * self.nozzle_area * 1e-6 # in L + if len(self.extrusion_tracker) == 0: + aggregate_volume = volume + aggregate_time = time_consumption + else: + aggregate_volume = self.extrusion_tracker[-1][2] + volume + aggregate_time = self.extrusion_tracker[-1][0] + time_consumption + mass = aggregate_volume * self.density # in g + self.extrusion_tracker.append( + [aggregate_time, volume, aggregate_volume, mass, speed] + ) + + def write_log_file(self, filename: str): + with open(filename, "w") as f: + writer = csv.writer(f) + writer.writerow( + ["time", "volume", "aggregate volume", "aggregate mass", "speed(F)"] + ) + writer.writerows(self.extrusion_tracker) + + def compute_feedrate(self): + rect_width = self.line_width * self.delta + return self.gamma * 60 / (self.layer_height * rect_width * self.density * 1e-6) + +
+[docs] + def read_points(self, csv_file: str): + """Read points from file x and y is mandatory, z coordination optional + + Args: + filepath: Path to file + + Returns: + points: List of points + """ + + points_form_file = np.genfromtxt(csv_file, delimiter=",", skip_header=1) + if self.offset_from_origin is None: + self.offset_from_origin = np.zeros_like(points_form_file[0]) + + assert ( + len(self.offset_from_origin) == np.array(points_form_file).shape[1] + ), "Offset from origin must have the same dimension as the points" + # subtract offset + self.points = (points_form_file + self.offset_from_origin).tolist() + + # check if point are given for each layer or only for one + if np.array(self.points).shape[1] == 3: + # get layer height and layer number from file + self.layer_height = "given by file" + self.layer_num = "given by file" + + if self.rotate: + if np.array(self.points).shape[1] == 2: + # add zero z coordinate + points_3d = np.zeros((np.array(self.points).shape[0], 3)) + points_3d[:, :2] = self.points + self.points = bcad.rotate( + points_3d, angle_z=np.deg2rad(-90), cnt=points_3d[0] + ) + self.points = self.points[:, :2] + else: + points_3d = np.array(self.points) + + self.points = bcad.rotate( + points_3d, angle_z=np.deg2rad(-90), cnt=points_3d[0] + ) + + self.points_t = np.array(self.points).T + self.bbox = np.array( + [ + [ + np.min(self.points_t[0]) - self.line_width * 0.5, + np.min(self.points_t[1]) - self.line_width * 0.5, + ], + [ + np.max(self.points_t[0]) + self.line_width * 0.5, + np.max(self.points_t[1]) + self.line_width * 0.5, + ], + ] + ) + self.bbox_length = self.bbox[1][0] - self.bbox[0][0] + self.bbox_width = self.bbox[1][1] - self.bbox[0][1]
+ + +
+[docs] + def reset_extrusion(self): + """Reset extrusion length + + :return: string of gcode command + :rtype: str + """ + cmd = f"{self.Reset} {self.LengthOfExtrude}0" + self.gcode.append(cmd + "\n")
+ + +
+[docs] + def elevate(self, z: float, f: float = None): + """Elevate to a height + + :param z: z coordinate + :type z: float + :param f: feed rate, defaults to None + :type f: float, optional + :return: string of gcode command + :rtype: str + """ + cmd = f"{self.LinearMove} {self.SetZ}{z}" + if f is not None: + cmd += f" {self.SetFeedRate}{f}" + self.gcode.append(cmd + "\n")
+ + +
+[docs] + def move( + self, + p: list, + e: float | bool = None, + f: float | bool = None, + s: float | bool = None, + ): + """Move to a point in XY or XYZ plane""" + if len(p) == 2: + cmd = f"{self.LinearMove} {self.SetX}{p[0]} {self.SetY}{p[1]}" + elif len(p) == 3: + cmd = f"{self.LinearMove} {self.SetX}{p[0]} {self.SetY}{p[1]} {self.SetZ}{p[2]}" + if e is not None: + cmd += f" {self.LengthOfExtrude}{e}" + if f is not None: + cmd += f" {self.SetFeedRate}{f}" + if s is not None and s != 0: + cmd += f" {self.SetExtrudeSpeed}{s}" + self.gcode.append(cmd + "\n")
+ + +
+[docs] + def write_gcode(self, filename: str, gcode: str): + """Write gcode to file + + :param filename: file name + :type filename: str + :param gcode: gcode string + :type gcode: str + """ + self.gcode.append(";==========Post==========\n") + for line in self.tail: + self.gcode.append(line + "\n") + # logging.info(f"Write gcode to {filename}") + self.logger.info(f"Write gcode to {filename}") + with open(filename, "w", encoding="utf-8") as f: + f.write("".join(gcode))
+ + +
+[docs] + def set_unit(self, unit): + """Set unit + + :param unit: unit + :type unit: str + :raises ValueError: Value error + :return: string of gcode command + :rtype: str + """ + if unit == "mm": + return self.UseMM + elif unit == "inch": + return self.UseInch + else: + raise ValueError("Unit must be mm or inch")
+ + +
+[docs] + def set_coordinate_system(self): + """Set coordinate system + + :raises ValueError: Value error + :return: string of gcode command + :rtype: str + """ + if self.coordinate_system == "absolute": + return self.command(self.Absolute) + elif self.coordinate_system == "relative": + return self.command(self.Relative) + else: + raise ValueError("Coordinate system must be absolute or relative")
+ + +
+[docs] + def init_gcode(self): + """Initialize gcode""" + + def distance(p0, p1): + return np.linalg.norm(np.array(p0) - np.array(p1)) + + if not self.fixed_feedrate: + self.feedrate = self.compute_feedrate() + self.print_length = 0 + for i in range(len(self.points)): + current_pt = self.points[i] + next_pt = self.points[ + (i + 1) % len(self.points) + ] # next point or the first point for the last one + self.print_length += distance(current_pt, next_pt) + + if len(current_pt) == 3: + # points for all layers given + self.material_consumption = ( + self.print_length * self.line_width * 1e-6 + ) # in Liters + self.time_consumption = self.print_length / self.feedrate * 60 # in seconds + else: + self.material_consumption = ( + self.print_length + * self.line_width + * self.layer_height + * self.layer_num + * 1e-6 + ) # in Liters + self.time_consumption = ( + self.print_length * self.layer_num / self.feedrate * 60 + ) # in seconds + self.timedelta = timedelta(seconds=self.time_consumption) + self.comment_info() + self.gcode.append(";==========Priming==========\n") + for line in self.header: + self.gcode.append(line + "\n")
+ + +
+[docs] + def set_fanspeed(self, speed): + """Set fan speed + :param speed: fan speed + :type speed: float + :return: string of gcode command + :rtype: str + """ + return f"{self.FanON} S{speed}"
+ + +
+[docs] + def set_temperature(self, temperature): + """Set temperature + + :param temperature: temperature + :type temperature: float + :return: string of gcode command + :rtype: str + """ + return f"{self.SetExtruderTemperature} S{temperature}"
+ + +
+[docs] + def set_tool(self, tool_number): + """set tool + + :param tool_number: tool number + :type tool_number: int + :return: string of gcode command + :rtype: str + """ + return f"{self.SetTool}{tool_number}"
+ + + def comment_info(self): + def comment(text): + return f"; {text}\n" + + # Format hours, minutes, and seconds + hours, remainder = divmod(self.timedelta.seconds, 3600) + minutes, seconds = divmod(remainder, 60) + length = self.bbox_length + width = self.bbox_width + info_feedrate = self.feedrate + self.gcode.append(comment(f"Timestamp: {datetime.now()}")) + self.gcode.append(comment(f"Length: {length}")) + self.gcode.append(comment(f"Width: {width}")) + if self.layer_num == "given by file": + height = np.array(self.points)[:, -1].max() + else: + height = self.layer_height * self.layer_num + self.gcode.append(comment(f"Height: {height}")) + self.gcode.append(comment(f"Layer height: {self.layer_height}")) + self.gcode.append(comment(f"Layer number: {self.layer_num}")) + self.gcode.append(comment(f"Line width: {self.line_width}")) + self.gcode.append( + comment(f"Different geometry per layer: {self.diff_geo_per_layer}") + ) + self.gcode.append(comment(f"Tool number: {self.tool_number}")) + self.gcode.append(comment(f"Feed rate: {info_feedrate}")) + self.gcode.append(comment(f"Kappa: {self.kappa}")) + self.gcode.append(comment(f"Gamma: {self.gamma}")) + self.gcode.append(comment(f"Delta: {self.delta}")) + self.gcode.append(comment(f"Standard: {self.standard}")) + self.gcode.append(comment(f"Coordinate system: {self.coordinate_system}")) + self.gcode.append(comment(f"Unit: {self.unit}")) + self.gcode.append(comment(f"Nozzle diameter: {self.nozzle_diameter}")) + + self.gcode.append( + comment(f"Material consumption(L): {self.material_consumption}") + ) + self.gcode.append( + comment(f"Estimated time consumption: {hours}hr:{minutes}min:{seconds}sec") + ) + if self.offset_from_origin is not None: + self.gcode.append( + comment(f"Original point: ({str(self.offset_from_origin)})") + )
+ + + +class GcodeMultiplier(object): + def __init__( + self, + num_horizant: int, + num_vertic: int, + plate_length: float, + plate_width: float, + gcode_params: dict, + standard: str = "ConcretePrinter", + ) -> None: + self.num_horizant = num_horizant + self.num_vertic = num_vertic + self.plate_length = plate_length + self.plate_width = plate_width + self.gcode_params = gcode_params + self.need_tune = False + self.unit_length = 0 + self.unit_width = 0 + self.gcodelist = [] + self.grid = [] + self.visualize_cache = [] + self.standard = standard + self.gcode_info = {} + self.gcode_geo = {} + self.recnst_geo = {} + self.grid = [] + self.visualize_cache = [] + for i in range(num_horizant * num_vertic): + self.gcodelist.append(GcodeFromPoints(**self.gcode_params)) + self.divide_plate() + + def divide_plate(self): + unit_length = self.plate_length / self.num_horizant + unit_width = self.plate_width / self.num_vertic + sample_length = self.gcodelist[0].bbox_length + sample_width = self.gcodelist[0].bbox_width + if unit_length < sample_length or unit_width < sample_width: + raise ValueError("The plate is too small to be divided. Perhaps rotate it?") + else: + self.unit_length = unit_length + self.unit_width = unit_width + for i in range(0, self.num_vertic): + for j in range(0, self.num_horizant): + self.grid.append( + np.array( + [ + [j * unit_length, i * unit_width], + [ + (j + 1) * unit_length, + (i + 1) * unit_width, + ], + ] + ) + ) + + def auto_balance(self, grid: np.ndarray, points: np.ndarray): + """Auto balance the points in the grid""" + + cnt_points = bcad.center_of_mass(points) + cnt_grid = bcad.center_of_mass(grid) + offset = cnt_grid - cnt_points + return offset + points + + def keep_distance(self, dist_hori: float, dist_vert: float): + """Keep the distance between the structures""" + if self.num_horizant > 2: + if self.unit_length - dist_hori < self.gcodelist[0].bbox_length: + raise ValueError( + f"The horizontal distance is too large, at least {self.gcodelist[0].bbox_length - self.unit_length + dist_hori}mm short" + ) + else: + if self.unit_length - dist_hori * 0.5 < self.gcodelist[0].bbox_length: + raise ValueError( + f"The horizontal distance is too large, at least {self.gcodelist[0].bbox_length - self.unit_length + dist_hori}mm short" + ) + if self.num_vertic > 2: + if self.unit_width - dist_vert < self.gcodelist[0].bbox_width: + raise ValueError( + f"The vertical distance is too large, at least {self.gcodelist[0].bbox_width - self.unit_width + dist_vert}mm short" + ) + else: + if self.unit_width - dist_vert * 0.5 < self.gcodelist[0].bbox_width: + raise ValueError( + f"The vertical distance is too large, at least {self.gcodelist[0].bbox_width - self.unit_width + dist_vert}mm short" + ) + for i in range(0, self.num_vertic): + new_box = np.array([[0, 0], [0, 0]]) + if i == 0: + new_box[1][1] = -dist_vert * 0.5 + elif i == self.num_vertic - 1: + new_box[0][1] = dist_vert * 0.5 + for j in range(0, self.num_horizant): + if j == 0: + new_box[1][0] = -dist_hori * 0.5 + elif j == self.num_horizant - 1: + new_box[0][0] = dist_hori * 0.5 + bbox = self.gcodelist[i * self.num_horizant + j].bbox + new_grid = self.grid[i * self.num_horizant + j] + new_box + cnt_bbox = bcad.center_of_mass(bbox) + cnt_grid = bcad.center_of_mass(new_grid) + offset = cnt_grid - cnt_bbox + self.gcodelist[i * self.num_horizant + j].points += offset + self.visualize_cache.append( + bcad.bounding_box(self.gcodelist[i * self.num_horizant + j].points) + ) + + def create( + self, + auto_balance: bool = True, + dist_horizont: float = 0, + dist_vertic: float = 0, + ): + """Create multiple gcode files in one plate. + Args: + auto_balance: Auto balance the points in the grid + dist_horizont: The distance between the structures in horizontal direction + dist_vertic: The distance between the structures in vertical direction + """ + + if auto_balance: + for i in range(0, self.num_vertic): + for j in range(0, self.num_horizant): + self.gcodelist[i * self.num_horizant + j].points = ( + self.auto_balance( + self.grid[i * self.num_horizant + j], + self.gcodelist[i * self.num_horizant + j].points, + ) + ) + self.visualize_cache.append( + bcad.bounding_box( + self.gcodelist[i * self.num_horizant + j].points + ) + ) + else: + self.keep_distance(dist_horizont, dist_vertic) + for ind, gcd in enumerate(self.gcodelist): + gcode_name = Path(self.gcode_params["in_file_path"]).stem + gcd.create(gcd.in_file_path, f"{gcode_name}_P{ind+1}.gcode") + + def read_gcode(self, in_file_path: str): + """Read gcode from file + + :param filepath: Path to file + :type filepath: str + :return: gcode + :rtype: str + """ + in_file_path = Path(in_file_path) + gcode_name = in_file_path.stem + with open(in_file_path, "r", encoding="utf-8") as f: + gcode = f.readlines() + annotation = [] + moving_cmd = [] + geo_container = [] + info_container = {} + + for line in gcode: + if line.startswith(";"): + annotation.append(line) + elif line.startswith(self.LinearMove): + moving_cmd.append(line) + for line in annotation: + if "Different geometry per layer" in line: + self.different_geo_per_layer = True + key_value = line.split(":", 1) + if len(key_value) == 2: + key, value = key_value + key = key.strip("; \n") + value = value.strip() + + # Optional: Convert value to a numeric type if applicable + if value.startswith("(") and value.endswith(")"): + # Remove parentheses and split by comma + value = value[1:-1].split(",") + # Convert each item to float + value = tuple(float(val.strip()) for val in value) + elif value.replace(".", "", 1).isdigit(): + value = float(value) if "." in value else int(value) + + info_container[key] = value + self.gcode_info[gcode_name] = info_container + ind1 = 0 + counter = 0 + for line in moving_cmd: + condition = self.SetZ in line + if ind1 == 1 and condition: + ind1 = 0 + if ind1 == 1: + pattern = r"([XYEF])(\d+\.\d+)" + matches = re.findall(pattern, line) + values = {letter: float(number) for letter, number in matches} + geo_container[-1].append(values) + if condition: + ind1 = 1 + counter += 1 + if not self.different_geo_per_layer and counter > 1: + break + geo_container.append([]) + self.gcode_geo[gcode_name] = geo_container + + def reconstruct_geo(self): + """Reconstruct the geometry from the gcode""" + for geo_name, geo in self.gcode_geo.items(): + cnt = np.zeros(2) + bbox = np.zeros((2, 2)) + layers = [] + for layer in geo: + points = [] + extrusions = [] + for state in layer: + point = np.array([state[self.SetX], state[self.SetY]]) + extrusion = ( + state[self.LengthOfExtrude] + if self.LengthOfExtrude in state + else 0 + ) + points.append(point) + extrusions.append(extrusion) + one_layer = {"points": points, "extrusions": extrusions} + layers.append(one_layer) + bbox = bcad.bounding_box(np.array([layer["points"] for layer in layers])) + cnt = bcad.center_of_mass(bbox) + self.recnst_geo[geo_name] = {"bbox": bbox, "cnt": cnt, "layers": layers} + + def visualize(self): + """Visualize the gcode files in one plate""" + # Create a figure and axis + fig, ax = plt.subplots() + + # Create a rectangle patch + rect = Rectangle( + (0, 0), + self.plate_length, + self.plate_width, + edgecolor="red", + facecolor="none", + ) + + # Add the rectangle to the Axes + ax.add_patch(rect) + + for bottom_left, upper_right in self.visualize_cache: + # Calculate width and height + width = upper_right[0] - bottom_left[0] + height = upper_right[1] - bottom_left[1] + + # Create a rectangle patch + rect = Rectangle( + (bottom_left[0], bottom_left[1]), + width, + height, + edgecolor="blue", + facecolor="none", + ) + + # Add the rectangle to the Axes + ax.add_patch(rect) + + # Set limits to display the rectangle + ax.set_xlim(-1, self.plate_length + 1) + ax.set_ylim(-1, self.plate_width + 1) + + # Display the plot + plt.show() + + def create_multiple_gcode( + self, + auto_balance: bool = True, + dist_horizont: float = 0, + dist_vertic: float = 0, + ): + """Create multiple gcode files in one plate. + Args: + auto_balance: Auto balance the points in the grid + dist_horizont: The distance between the structures in horizontal direction + dist_vertic: The distance between the structures in vertical direction + """ + + if auto_balance: + for i in range(0, self.num_vertic): + for j in range(0, self.num_horizant): + self.gcodelist[i * self.num_horizant + j].points = ( + self.auto_balance( + self.grid[i * self.num_horizant + j], + self.gcodelist[i * self.num_horizant + j].points, + ) + ) + self.visualize_cache.append( + bcad.bounding_box( + self.gcodelist[i * self.num_horizant + j].points + ) + ) + else: + self.keep_distance(dist_horizont, dist_vertic) + # for ind, gcd in enumerate(self.gcodelist): + # gcd.create( + # gcd.in_file_path, f"{self.gcode_params['standard']}_P{ind+1}.gcode" + # ) +
+ +
+
+ +
+
+
+
+ + + + \ No newline at end of file diff --git a/_modules/amworkflow/geometry/builtinCAD.html b/_modules/amworkflow/geometry/builtinCAD.html new file mode 100644 index 0000000..4a26f75 --- /dev/null +++ b/_modules/amworkflow/geometry/builtinCAD.html @@ -0,0 +1,2675 @@ + + + + + + amworkflow.geometry.builtinCAD — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
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+
+
+ +

Source code for amworkflow.geometry.builtinCAD

+import inspect
+import logging
+import os
+import pickle
+import platform
+from pprint import pprint
+from typing import Union
+
+import matplotlib.pyplot as plt
+import networkx as nx
+import numpy as np
+
+# Import several signals from Configuration.
+from amworkflow.config.settings import (
+    CLEAN_UP,
+    ENABLE_CONCURRENT_MODE,
+    ENABLE_OCC,
+    ENABLE_SHELF,
+    ENABLE_SQL_DATABASE,
+    LOG_LEVEL,
+    STORAGE_PATH,
+)
+
+STATUS = (
+    "memory"
+    if (not ENABLE_SQL_DATABASE and not ENABLE_SHELF)
+    else ("database" if ENABLE_SQL_DATABASE else "shelf")
+)
+
+# Import multiprocessing and initialize the start method to 'fork' if concurrent mode is enabled. this also means the code will only be suitable for Unix-like systems.
+if ENABLE_CONCURRENT_MODE:
+    import multiprocessing
+
+    if multiprocessing.get_start_method(True) != "fork":
+        multiprocessing.set_start_method("fork")
+        logging.debug("%s starting.", multiprocessing.current_process().name)
+
+# Setting up the logging configuration.
+logging.basicConfig(
+    level=logging.INFO, format="%(asctime)s - %(name)s - %(levelname)s - %(message)s"
+)
+logger = logging.getLogger("amworkflow.geometry.builtinCAD")
+logger.setLevel(LOG_LEVEL)
+
+# Import OCC if enabled.
+if ENABLE_OCC:
+    try:
+        from OCC.Core.gp import gp_Pnt
+
+        import amworkflow.occ_helpers as occh
+    except ImportError as e:
+        print("OCC module couldn't be imported:", e)
+        ENABLE_OCC = False  # Disable OCC if import fails
+
+else:
+    logging.warning("OCC is disabled. Try running without it now.")
+
+# Initialize some containers to store the objects and their properties.
+count_id = 0
+count_gid = [0 for i in range(7)]
+component_lib = {}
+component_container = {}
+TYPE_INDEX = {
+    0: "point",
+    1: "segment",
+    2: "wire",
+    3: "surface",
+    4: "shell",
+    5: "solid",
+    6: "compound",
+}
+
+# Create a database to store the objects. Though python data structures can be used to store the objects, a database is used to store the objects for the support of concurrent access.
+if ENABLE_SQL_DATABASE:
+    logger.debug("SQL Database is enabled.")
+    import sqlite3
+
+    db_name = "bcad_sql"
+    db_path = os.path.join(STORAGE_PATH, f"{db_name}.db")
+    if os.path.exists(db_path) and CLEAN_UP:
+        # remove the existing database file
+        os.remove(db_path)
+    conn = sqlite3.connect(db_path)
+    c = conn.cursor()
+    # Create the modified 'objects' table to store only Oid references
+    c.execute(
+        """CREATE TABLE IF NOT EXISTS objects
+                (id INTEGER PRIMARY KEY AUTOINCREMENT, 
+                object_type TEXT, 
+                gid INTEGER,
+                property BLOB)"""
+    )
+
+    # Create tables for each type of object
+    for key, value in TYPE_INDEX.items():
+        c.execute(
+            f"""CREATE TABLE IF NOT EXISTS {value}
+                    (gid INTEGER PRIMARY KEY AUTOINCREMENT, 
+                    id INTEGER,
+                    value BLOB,
+                    obj BLOB,
+                    FOREIGN KEY (id) REFERENCES objects(id) ON DELETE CASCADE)"""
+        )
+    logger.debug("Database created successfully.")
+    conn.commit()
+    conn.close()
+
+    def store_obj_to_db(obj_type: str, obj: any, obj_property: dict) -> tuple:
+        """
+        Insert an object to the database and return its id.
+        :param obj_type: The type of the object to be inserted.
+        :type obj_type: str
+        :param obj: The object to be inserted.
+        :type obj: any
+        :return: The id, gid of the object.
+        :rtype: tuple
+        """
+        # oid, gid = get_last_id_from_db(table=obj_type, gid=True)
+        # oid += 1
+        # gid += 1
+        # obj.id = oid
+        # obj.gid = gid
+        # obj.update_basic_property()
+        if obj_type not in TYPE_INDEX.values():
+            raise ValueError(f"Unrecognized object type: {obj_type}.")
+        local_conn = sqlite3.connect(db_path)
+        local_c = local_conn.cursor()
+
+        local_value = obj.value
+        local_c.execute(
+            f"INSERT INTO {obj_type} (obj, value) VALUES (?,?)",
+            (pickle.dumps(obj), pickle.dumps(local_value)),
+        )
+        local_conn.commit()
+        gid = local_c.lastrowid
+        local_c.execute(
+            """
+            INSERT INTO objects (object_type, gid, property)
+            VALUES (?, ?, ?)
+            """,
+            (
+                obj_type,
+                gid,
+                pickle.dumps(obj_property),
+            ),
+        )
+        local_conn.commit()
+        oid = local_c.lastrowid
+        local_c.execute(f"UPDATE {obj_type} SET id = ? WHERE gid = ?", (oid, gid))
+        local_conn.commit()
+        local_conn.close()
+        return oid, gid
+
+    def get_last_id_from_db(table: str = "", gid: bool = False) -> int:
+        """
+        Get the last id from the database.
+        :return: The last id from the database.
+        :rtype: int
+        """
+        local_conn = sqlite3.connect(db_path)
+        local_c = local_conn.cursor()
+        local_c.execute("SELECT MAX(id) FROM objects")
+        last_id = local_c.fetchone()[0]
+        if last_id is None:
+            last_id = 0
+        if gid:
+            local_c.execute(f"SELECT MAX(gid) FROM {table}")
+            last_gid = local_c.fetchone()[0]
+            local_conn.close()
+            if last_gid is None:
+                last_gid = 0
+            return last_id, last_gid
+        local_conn.close()
+        return last_id
+
+    def get_obj_from_db(
+        oid: int = None, it_value: list = None, obj_type: str = None
+    ) -> any:
+        """
+        Get an object from the database by its id.
+        :param oid: The id of the object to be retrieved.
+        :type oid: int
+        :return: The object retrieved.
+        :rtype: any
+        """
+        local_conn = sqlite3.connect(db_path)
+        local_c = local_conn.cursor()
+        if oid is not None:
+            local_c.execute("SELECT object_type FROM objects WHERE id = ?", (oid,))
+            obj_type = local_c.fetchone()[0]
+            local_c.execute(
+                f"""SELECT {obj_type}.obj, {obj_type}.gid
+                        FROM objects
+                        INNER JOIN {obj_type} ON objects.gid = {obj_type}.gid
+                        WHERE objects.id = ?""",
+                (oid,),
+            )
+            row = local_c.fetchone()
+            if row:
+                obj = pickle.loads(row[0])
+                obj.id = oid
+                obj.gid = row[1]
+                obj.update_basic_property()
+            local_conn.close()
+        elif it_value is not None:
+            local_c.execute(
+                f"""SELECT {obj_type}.obj, {obj_type}.gid, {obj_type}.id
+                        FROM {obj_type}
+                        WHERE {obj_type}.value = ?)""",
+                (pickle.dumps(it_value),),
+            )
+            row = local_c.fetchone()
+            if row:
+                obj = pickle.loads(row[0])
+                obj.id = row[2]
+                obj.gid = row[1]
+                obj.update_basic_property()
+            local_conn.close()
+        else:
+            # local_c.execute(
+            #     f"""SELECT {obj_type}.obj
+            #             FROM {obj_type}
+            #             INNER JOIN objects ON {obj_type}.gid = objects.gid
+            #             """
+            # )
+            local_c.execute(
+                f"""SELECT obj, gid, id
+                        FROM {obj_type}
+                        """
+            )
+            # rows = local_c.fetchall()
+            for row in local_c:
+                obj = pickle.loads(row[0])
+                obj.id = row[2]
+                obj.gid = row[1]
+                obj.update_basic_property()
+                yield obj
+            local_conn.close()
+            return None
+        yield obj
+
+    def get_property_from_db(oid: int = None) -> dict:
+        """
+        Get the property of an object from the database by its id.
+        :param oid: The id of the object to be retrieved.
+        :type oid: int
+        :return: The property of the object retrieved.
+        :rtype: dict
+        """
+        local_conn = sqlite3.connect(db_path)
+        local_c = local_conn.cursor()
+        if int is not None:
+            local_c.execute("SELECT property FROM objects WHERE id = ?", (oid,))
+            it_property = pickle.loads(local_c.fetchone()[0])
+            yield it_property
+        else:
+            local_c.execute("SELECT property FROM objects")
+            for row in local_c:
+                it_property = pickle.loads(row[0])
+                yield it_property
+
+    def update_obj_in_db(
+        obj: any, obj_property: dict = None, oid: int = None, obj_type: str = None
+    ):
+        """
+        Update an object in the database.
+        :param oid: The id of the object to be updated.
+        :type oid: int
+        :param obj: The object to be updated.
+        :type obj: any
+        :param obj_property: The property of the object to be updated.
+        :type obj_property: dict
+        """
+        local_conn = sqlite3.connect(db_path)
+        local_c = local_conn.cursor()
+        if oid is None:
+            oid = obj.id
+        if obj_type is None:
+            obj_type = TYPE_INDEX[obj.type]
+        if obj_property is None:
+            obj_property = obj.property
+        local_c.execute(
+            "UPDATE objects SET property = ? WHERE id = ?",
+            (pickle.dumps(obj_property), oid),
+        )
+        local_c.execute(
+            f"UPDATE {obj_type} SET obj = ? WHERE gid = ?", (pickle.dumps(obj), obj.gid)
+        )
+        local_conn.commit()
+        local_conn.close()
+
+    def delete_obj_from_db(oid: int):
+        """
+        Delete an object from the database.
+        :param oid: The id of the object to be deleted.
+        :type oid: int
+        """
+        local_conn = sqlite3.connect(db_path)
+        local_c = local_conn.cursor()
+        local_c.execute("DELETE FROM objects WHERE id = ?", (oid,))
+        local_conn.commit()
+        local_conn.close()
+
+    def delete_sql_db_file(db_name):
+        # Construct the full filename including the extension
+        db_file = f"{db_name}.db"
+        db_path = os.path.join(STORAGE_PATH, db_file)
+        # Check if the file exists and delete it
+        try:
+            if os.path.exists(db_path):
+                os.remove(db_path)
+                print(f"Deleted database file: {db_file}")
+            else:
+                print(f"Database file {db_file} does not exist and cannot be deleted.")
+        except Exception as ex:
+            print(f"Error deleting database file {db_file}: {ex}")
+
+
+if ENABLE_SHELF:
+    import shelve
+
+    logger.debug("Shelf is enabled.")
+
+    def check_shelve_db_exists(shelve_name):
+        # Determine the current operating system
+        os_name = platform.system()
+        # Define file extensions based on the operating system
+        if os_name == "Darwin":  # macOS
+            files_to_check = [f"{shelve_name}.db"]
+        elif os_name == "Linux":
+            files_to_check = [
+                f"{shelve_name}.dat",
+                f"{shelve_name}.dir",
+            ]
+        else:
+            raise NotImplementedError(f"OS {os_name} not supported.")
+
+        # Check if all required files exist
+        return all(
+            os.path.exists(os.path.join(STORAGE_PATH, file)) for file in files_to_check
+        )
+
+    def delete_shelve_db_files(shelve_name):
+        # Determine the current operating system
+        os_name = platform.system()
+        # Start with the common file extensions
+        if os_name == "Darwin":  # macOS
+            files_to_delete = [
+                f"{shelve_name}.db"
+            ]  # macOS typically uses a single .db file
+        elif os_name == "Linux" or os_name == "Windows":
+            # For Linux and Windows, start with .dat and .dir which are commonly used
+            files_to_delete = [f"{shelve_name}.dat", f"{shelve_name}.dir"]
+        else:
+            raise NotImplementedError(f"OS {os_name} not supported.")
+
+        # Always check for a .bak file regardless of the OS
+        bak_file = f"{shelve_name}.bak"
+        if os.path.exists(os.path.join(STORAGE_PATH, bak_file)):
+            files_to_delete.append(bak_file)
+
+        # Delete the files
+        for file in files_to_delete:
+            try:
+                if os.path.exists(os.path.join(STORAGE_PATH, file)):
+                    os.remove(file)
+                    print(f"Deleted {file}")
+                else:
+                    print(f"{file} does not exist and cannot be deleted.")
+            except Exception as e:
+                print(f"Error deleting {file}: {e}")
+
+    shelve_name = "bcad_shelf"  # Without the extension
+    if check_shelve_db_exists(shelve_name):
+        logger.debug("Shelve database exists.")
+    else:
+        logger.debug("Shelve database does not exist. Creating...")
+    shelf_path = os.path.join(STORAGE_PATH, shelve_name)
+    bcad_shelf = shelve.open(shelf_path, "c")
+    logger.debug("Shelf database created successfully.")
+
+    def get_next_id(db, update=False):
+        """Retrieve the next available ID, incrementing the stored value."""
+        if "next_id" not in db:
+            db["next_id"] = 0
+        elif update:
+            db["next_id"] += 1
+        else:
+            pass
+        return db["next_id"]
+
+    def add_entry(db, data):
+        """Add a new entry with an auto-incremented ID."""
+        next_id = get_next_id(db)
+        db[str(next_id)] = data
+        get_next_id(db, update=True)
+        return next_id
+
+    def get_entry(db: shelve.Shelf, oid: int = None):
+        """Get  an entry from the shelf. If oid is not specified, return all entries.
+
+        :param db: shelf specified
+        :type db: Shelve
+        :param oid: id of the entry
+        :type oid: int
+        """
+        if oid is not None:
+            return db[str(oid)]
+        else:
+            for local_key, local_value in bcad_shelf.items():
+                try:
+                    local_key = int(local_key)
+                except:
+                    continue
+                yield local_value
+
+    def update_entry(db: shelve.Shelf, oid: int, obj: any):
+        """Update an entry in the shelf.
+
+        :param db: shelf specified
+        :type db: Shelve
+        :param oid: id of the entry
+        :type oid: int
+        :param data: data to be updated
+        :type data: any
+        """
+        db[str(oid)] = {"info": obj.property, "obj": obj}
+
+
+def clean_up():
+    if ENABLE_SQL_DATABASE:
+        conn.close()
+        delete_sql_db_file(db_name)
+    if ENABLE_SHELF:
+        bcad_shelf.close()
+        delete_shelve_db_files(shelve_name)
+
+
+
+[docs] +def pnt(pt_coord) -> np.ndarray: + """ + Create a point. + :param pt_coord: The coordinate of the point. If the dimension is less than 3, the rest will be padded with 0. If the dimension is more than 3, an exception will be raised. + :type pt_coord: list + :return: The coordinate of the point. + :rtype: np.ndarray + """ + opt = np.array(pt_coord) + dim = np.shape(pt_coord)[0] + if dim > 3: + raise ValueError( + f"Got wrong point {pt_coord}: Dimension more than 3rd provided." + ) + if dim < 3: + opt = np.lib.pad(opt, ((0, 3 - dim)), "constant", constant_values=0) + return opt
+ + + +
+[docs] +class DuplicationCheck: + """ + Check if an item already exists in the index. + """ + + def __init__( + self, + gtype: int, + gvalue: any, + ) -> None: + self.gtype = gtype + self.gvalue = gvalue + self.check_type_validity(item_type=self.gtype) + self.new, self.exist_object = self.new_item(gvalue, gtype) + if not self.new: + self.exist_object.re_init = True + exist_obj_id = self.exist_object.id + logging.debug( + "%s %s %s already exists, return the old one.", + TYPE_INDEX[gtype], + exist_obj_id, + gvalue, + ) + + def __setstate__(self, state): + # This method is called during deserialization. + # Update the state to indicate this instance was deserialized from pickle. + state["deserialized_from_pickle"] = True + self.__dict__.update(state) + +
+[docs] + def check_type_coincide(self, base_type: int, item_type: int) -> bool: + """Check if items has the same type with the base item. + + :param base_type: The type referred + :type base_type: int + :param item_type: The type to be examined + :type item_type: int + :return: True if coincident. + :rtype: bool + """ + different = base_type != item_type + self.check_type_validity(item_type=item_type) + if different: + return False + else: + return True
+ + +
+[docs] + def check_type_validity(self, item_type: int) -> bool: + """Check if given type if valid + + :param item_type: The type to be examined + :type item_type: int + :raises ValueError: Wrong geometry object type, perhaps a mistake made in development. + :return: True if valid + :rtype: bool + """ + valid = item_type in TYPE_INDEX + if not valid: + raise ValueError( + "Wrong geometry object type, perhaps a mistake made in development." + ) + return valid
+ + +
+[docs] + def check_value_repetition(self, base_value: any, item_value: any) -> bool: + """ + Check if a value is close enough to the base value. True if repeated. + :param base_value: item to be compared with. + :param item_value: value to be examined. + """ + if type(base_value) is list: + base_value = np.array(base_value) + item_value = np.array(item_value) + + return np.isclose(np.linalg.norm(base_value - item_value), 0, atol=1e-3)
+ + +
+[docs] + def new_item(self, item_value: any, item_type) -> tuple: + """ + Check if a value already exits in the index + :param item_value: value to be examined. + """ + match STATUS: + case "memory": + for _, item in component_lib.items(): + if self.check_type_coincide(item["type"], item_type): + if self.check_value_repetition(item["value"], item_value): + return False, component_container[item["id"]] + case "database": + obj_type = TYPE_INDEX[item_type] + components = {} + for obj_item in get_from_source(obj_type=obj_type): + obj_gid = obj_item.gid + components.update({obj_gid: obj_item}) + for gid, item in components.items(): + if self.check_value_repetition(item.value, item_value): + exist_obj = item + return False, exist_obj # BUG: Recursion Problem. + case "shelf": + for it_value in get_entry(bcad_shelf): + if self.check_type_coincide(it_value["info"]["type"], item_type): + if self.check_value_repetition( + it_value["info"]["value"], item_value + ): + exist_obj = it_value["obj"] + return False, exist_obj + return True, None
+
+ + + +class TopoObj: + # Class-level attribute to indicate deserialization + _is_deserializing = False + + def __init__(self) -> None: + """ + TopoObj + ---------- + The Base class for all builtin Topo class. + + Geometry object type: + 0: point + 1: segment + 2: wire + 3: surface + 4: shell + 5: solid + 6: compound + + id: An unique identity number for every instance of topo_class + gid: An unique identity number for every instance of topo_class with the same type + + """ + self.type = 0 + self.value = 0 + self.id = 0 + self.gid = 0 + self.own = {} + self.belong = {} + self.property = {} + self.property_enriched = False + self.re_init = False + + def __str__(self) -> str: + own = "" + for item_type, item_value in self.own.items(): + item_type = TYPE_INDEX[item_type] + for index, item_id in enumerate(item_value): + if index != len(item_value) - 1: + own += f"{item_id}({item_type})," + else: + own += f"{item_id}({item_type})" + belong = "" + for item_type, item_value in self.belong.items(): + item_type = TYPE_INDEX[item_type] + for index, item_id in enumerate(item_value): + if index != len(item_value) - 1: + belong += f"{item_id}({item_type})," + else: + belong += f"{item_id}({item_type})" + if self.type == 0: + local_value = str(self.value) + "(coordinate)" + else: + local_value = str(self.value) + "(IDs)" + doc = f"\033[1mType\033[0m: {TYPE_INDEX[self.type]}\n\033[1mID\033[0m: {self.id}\n\033[1mValue\033[0m: {local_value}\n\033[1mOwn\033[0m: {own}\n\033[1mBelong\033[0m: {belong}\n" + return doc + + def enrich_property(self, new_property: dict): + """Enrich the property out of the basic property. + + :param new_property: A dictionary containing new properties and their values. + :type new_property: dict + :raises ValueError: New properties override existing properties. + """ + for key, value in new_property.items(): + if key in self.property: + self.property.update({key: value}) + else: + self.property.update({key: value}) + self.property_enriched = True + + def update_basic_property(self): + """Update basic properties""" + self.property.update( + { + "type": self.type, + # f"{TYPE_INDEX[self.type]}": self, + "id": self.id, + "gid": self.gid, + "own": self.own, + "belong": self.belong, + "value": self.value, + } + ) + + def update_component_container(self): + component_container.update({self.id: self}) + + def update_property(self, property_key: str, property_value: any): + """Update a property of the item. + + :param property_key: The key of the property to be updated. + :type property_key: str + :param property_value: The value of the property to be updated. + :type property_value: any + """ + if property_key not in self.property: + raise ValueError(f"Unrecognized property key: {property_key}.") + self.property.update({property_key: property_value}) + + def register_item(self) -> int: + """ + Register an item to the index and return its id. Duplicate value will be filtered. + :param item_value: value to be registered. + """ + # new, old_id = self.new_item(self.value, self.type) + match STATUS: + case "memory": + global count_id + global count_gid + # if new: + if isinstance(count_id, int): + self.id = count_id + count_id += 1 + else: + self.id = count_id.value + count_id.value += 1 + self.gid = count_gid[self.type] + count_gid[self.type] += 1 + self.update_basic_property() + component_lib.update({self.id: self.property}) + self.update_component_container() + case "database": + + self.id, self.gid = store_obj_to_db( + TYPE_INDEX[self.type], self, self.property + ) + logger.debug( + "Stored %s %s: %s into Database", + TYPE_INDEX[self.type], + self.id, + self.value, + ) + self.update_basic_property() + case "shelf": + self.id = get_next_id(bcad_shelf) + self.update_basic_property() + self.id = add_entry(bcad_shelf, {"info": self.property, "obj": self}) + + # Logging the registration + logging.debug("Registered %s: %s", TYPE_INDEX[self.type], self.id) + return self.id + # else: + # return old_id + + def update_dependency(self, *own: list): + for item in own: + if item.type in self.own: + if item.id not in self.own: + self.own[item.type].append(item.id) + else: + self.own.update({item.type: [item.id]}) + if self.type in item.belong: + if self.id not in item.belong[self.type]: + item.belong[self.type].append(self.id) + else: + item.belong.update({self.type: [self.id]}) + if STATUS == "database": + local_conn = sqlite3.connect(db_path) + local_c = local_conn.cursor() + obj = pickle.dumps(self) + local_c.execute( + f"UPDATE {TYPE_INDEX[self.type]} SET obj = ? WHERE gid = ?", + (obj, self.gid), + ) + local_conn.commit() + local_conn.close() + if ENABLE_SHELF: + bcad_shelf[str(self.id)]["info"] = self.property + bcad_shelf[str(self.id)]["obj"] = self + # self.update_basic_property() + # self.update_component_lib() + + +
+[docs] +def get_from_source( + oid: int = None, it_value: list = None, obj_type: str = None, target: str = "object" +): + """A wrapper function to get the object from the source. if oid is not specified, it_value or obj_type will be used. If none of them is specified, all objects will be returned. + + Notice: In case of stack overflow, when return all objects or all in one type, the function will return a generator. + + :param oid: The id of the object to be retrieved. + :type oid: int + :param it_value: The value of the object to be retrieved. + :type it_value: list + :param obj_type: The type of the object to be retrieved. + :type obj_type: str + :param target: The target of the retrieval, either "object" or "property". + :type target: str + :return: The object retrieved. + :rtype: any + """ + mode = ( + "id" + if oid is not None + else ( + "value" + if it_value is not None + else ("type" if obj_type is not None else "all") + ) + ) + match mode: + case "id": + match STATUS: + case "memory": + if target == "object": + yield component_container[oid] + elif target == "property": + yield component_lib[oid] + case "database": + if target == "object": + yield from get_obj_from_db(oid=oid) + elif target == "property": + yield from get_property_from_db(oid=oid) + case "shelf": + if target == "object": + yield bcad_shelf[str(oid)]["obj"] + elif target == "property": + yield bcad_shelf[str(oid)]["info"] + case "value": + match STATUS: + case "memory": + if target == "object": + for item in component_container.values(): + if TYPE_INDEX[item.type] == obj_type: + yield item + elif target == "property": + for item in component_lib.values(): + if TYPE_INDEX[item["type"]] == obj_type: + yield item + case "database": + yield from get_obj_from_db(it_value=it_value) + case "shelf": + for item in get_entry(bcad_shelf): + if item["info"]["value"] == it_value: + if target == "object": + yield item["obj"] + elif target == "property": + yield item["info"] + case "type": + match STATUS: + case "memory": + if target == "object": + for item in component_container.values(): + if TYPE_INDEX[item.type] == obj_type: + yield item + elif target == "property": + for item in component_lib.values(): + if TYPE_INDEX[item["type"]] == obj_type: + yield item + case "database": + # This is a generator + yield from get_obj_from_db(obj_type=obj_type) + case "shelf": + for item in get_entry(bcad_shelf): + if item["info"]["type"] == obj_type: + if target == "object": + yield item["obj"] + elif target == "property": + yield item["info"] + case "all": + match STATUS: + case "memory": + # This is a dictionary + yield component_lib + case "database": + # This is a generator + yield from get_obj_from_db() + case "shelf": + # This is a generator + yield get_entry(bcad_shelf)
+ + + +
+[docs] +def send_to_source(obj: TopoObj, obj_property: dict): + """A wrapper function to send the object to the source. + + :param obj: The object to be sent. + :type obj: TopoObj + :param obj_property: The property of the object to be sent. + :type obj_property: dict + """ + match STATUS: + case "memory": + obj.update_basic_property() + obj.update_component_container() + case "database": + store_obj_to_db(obj.type, obj, obj_property) + case "shelf": + add_entry(bcad_shelf, {"info": obj_property, "obj": obj})
+ + + +
+[docs] +def update_source(obj: TopoObj, obj_property: dict = None): + """A wrapper function to update the source of the object. + :param obj: The object to be updated. + :type obj: TopoObj + :param obj_property: The property of the object to be updated. + :type obj_property: dict + """ + match STATUS: + case "memory": + component_container.update({obj.id: obj}) + component_lib.update({obj.id: obj.property}) + case "database": + update_obj_in_db(obj, obj_property) + case "shelf": + update_entry(bcad_shelf, obj.id, obj)
+ + + +
+[docs] +class Pnt(TopoObj): + """ + Create a point. + """ + + def __new__(cls, coord: list = [], loading_state=None) -> None: + if cls._is_deserializing: + return super().__new__(cls) + point = pnt(coord) + checker = DuplicationCheck(0, point) + if checker.new: + instance = super().__new__(cls) + instance.re_init = False + return instance + else: + return checker.exist_object + + def __init__(self, coord: list = [], loading_state=None) -> None: + if self._is_deserializing: + for key, value in loading_state.items(): + setattr(self, key, value) + elif self.re_init: + return + else: + super().__init__() + self.re_init = False + self.type = 0 + self.coord = pnt(coord) + self.value = self.coord + if ENABLE_OCC: + self.occ_pnt = gp_Pnt(*self.coord.tolist()) + self.enrich_property({"occ_pnt": self.occ_pnt}) + self.id = self.register_item() + logger.debug("Created point %s: %s", self.id, self.value) + + @classmethod + def my_custom_reconstructor(cls, state_dict): + # Set the flag to indicate deserialization is in progress + cls._is_deserializing = True + # Create a new instance (which calls __new__ and then __init__) + instance = cls(loading_state=state_dict) + # Reset the flag to avoid affecting other instantiations + # Apply the saved state + instance.__dict__.update(state_dict) + cls._is_deserializing = False + return instance + + def __reduce__(self): + return (self.my_custom_reconstructor, (self.__dict__,))
+ + + +class Segment(TopoObj): + def __new__( + cls, + pnt1: Union[Pnt, int] = Pnt([]), + pnt2: Union[Pnt, int] = Pnt([1]), + loading_state=None, + ): + if cls._is_deserializing: + return super().__new__(cls) + if isinstance(pnt1, int): + pnt1 = [i for i in get_from_source(oid=pnt1)][0] + if isinstance(pnt2, int): + pnt2 = [i for i in get_from_source(oid=pnt2)][0] + checker = DuplicationCheck(1, [pnt1.id, pnt2.id]) + if checker.new: + instance = super().__new__(cls) + instance.re_init = False + return instance + else: + return checker.exist_object + + def __init__( + self, + pnt1: Union[Pnt, int] = Pnt([]), + pnt2: Union[Pnt, int] = Pnt([1]), + loading_state=None, + ) -> None: + if self._is_deserializing: + for key, value in loading_state.items(): + setattr(self, key, value) + elif self.re_init: + return + else: + super().__init__() + if isinstance(pnt1, int): + pnt1 = [i for i in get_from_source(oid=pnt1)][0] + if isinstance(pnt2, int): + pnt2 = [i for i in get_from_source(oid=pnt2)][0] + self.raw_value = [pnt1.value, pnt2.value] + self.re_init = False + valid = self.check_input(pnt1=pnt1, pnt2=pnt2) + self.start_pnt = pnt1.id + self.end_pnt = pnt2.id + self.vector = pnt2.value - pnt1.value + self.length = np.linalg.norm(self.vector) + if self.length != 0: + self.normal = self.vector / self.length + else: + self.normal = np.array([0, 0, 0]) + self.type = 1 + self.value = [self.start_pnt, self.end_pnt] + if ENABLE_OCC and valid: + + self.occ_edge = occh.create_edge(pnt1.occ_pnt, pnt2.occ_pnt) + self.enrich_property({"occ_edge": self.occ_edge}) + self.enrich_property( + { + "vector": self.vector, + "length": self.length, + "normal": self.normal, + "self_edge": False, + } + ) + if not valid: + self.enrich_property({"self_edge": True}) + self.register_item() + if ENABLE_OCC and valid: + logger.debug( + "Created OCC edge %s by points: %s, %s", self.id, pnt1.id, pnt2.id + ) + self.update_dependency(pnt1, pnt2) + + def check_input(self, pnt1: Pnt, pnt2: Pnt) -> bool: + if not ENABLE_SQL_DATABASE and not ENABLE_SHELF: + component_info = component_lib + component_bucket = component_container + elif not ENABLE_SHELF: + component_info = {} + component_bucket = {} + for i in get_from_source(obj_type="point"): + component_info.update({i.id: i.property}) + component_bucket.update({i.id: i}) + else: + component_info = {} + component_bucket = {} + for local_key, local_value in bcad_shelf.items(): + try: + local_key = int(local_key) + except: + continue + it_obj = local_value["obj"] + it_key = int(local_key) + component_info.update({it_key: local_value["info"]}) + component_bucket.update({it_key: it_obj}) + if type(pnt2) is int: + if pnt2 not in component_info: + raise ValueError(f"Unrecognized point id: {pnt2}.") + # pnt2 = component_lib[pnt2]["point"] + pnt2 = component_bucket[pnt2] + if type(pnt1) is int: + if pnt1 not in component_info: + raise ValueError(f"Unrecognized point id: {pnt1}.") + # pnt1 = component_lib[pnt1]["point"] + pnt1 = component_bucket[pnt1] + if not isinstance(pnt1, Pnt): + raise ValueError(f"Wrong type of point: {type(pnt1)}.") + if not isinstance(pnt2, Pnt): + raise ValueError(f"Wrong type of point: {type(pnt2)}.") + if pnt1.id == pnt2.id: + logger.warning( + "Two points are the same: %s, %s, a self-edge segment will be created.", + pnt1.id, + pnt2.id, + ) + return False + return True + + @classmethod + def my_custom_reconstructor(cls, state_dict): + # Set the flag to indicate deserialization is in progress + cls._is_deserializing = True + # Create a new instance (which calls __new__ and then __init__) + instance = cls(loading_state=state_dict) + # Reset the flag to avoid affecting other instantiations + # Apply the saved state + instance.__dict__.update(state_dict) + cls._is_deserializing = False + return instance + + def __reduce__(self): + return (self.my_custom_reconstructor, (self.__dict__,)) + + +class Wire(TopoObj): + def __new__(cls, *segments: Segment): + checker = DuplicationCheck(2, [item.id for item in segments]) + if checker.new: + instance = super().__new__(cls) + instance.re_init = False + return instance + else: + return checker.exist_object + + def __init__(self, *segments: Segment) -> None: + if self.re_init: + return + super().__init__() + self.re_init = False + self.type = 2 + self.seg_ids = [item.id for item in segments] + + self.update_dependency(*segments) + self.value = self.seg_ids + if ENABLE_OCC: + self.occ_wire = occh.create_wire(*[item.occ_edge for item in segments]) + self.enrich_property({"occ_wire": self.occ_wire}) + self.register_item() + + +class Surface(TopoObj): + def __new__(cls, *wire: Wire): + checker = DuplicationCheck(3, [item.id for item in wire]) + if checker.new: + instance = super().__new__(cls) + instance.re_init = False + return instance + else: + return checker.exist_object + + def __init__(self, *wires: Wire) -> None: + if self.re_init: + return + super().__init__() + self.re_init = False + self.type = 3 + self.wire_ids = [item.id for item in wires] + self.value = self.wire_ids + self.update_dependency(*wires) + if ENABLE_OCC: + self.occ_face = occh.create_face(wires[0].occ_wire) + self.enrich_property({"occ_face": self.occ_face}) + self.register_item() + + +class Shell(TopoObj): + def __new__(cls, *surfaces: Surface): + checker = DuplicationCheck(4, [item.id for item in surfaces]) + if checker.new: + instance = super().__new__(cls) + instance.re_init = False + return instance + else: + return checker.exist_object + + def __init__(self, *surfaces: Surface) -> None: + if self.re_init: + return + super().__init__() + self.re_init = False + self.type = 4 + self.surf_ids = [item.id for item in surfaces] + self.value = self.surf_ids + self.update_dependency(*surfaces) + if ENABLE_OCC: + self.occ_shell = occh.sew_face(*[item.occ_face for item in surfaces]) + self.enrich_property({"occ_shell": self.occ_shell}) + self.register_item() + + +class Solid(TopoObj): + def __new__(cls, shell: Shell): + checker = DuplicationCheck(5, shell.id) + if checker.new: + instance = super().__new__(cls) + instance.re_init = False + return instance + else: + return checker.exist_object + + def __init__(self, shell: Shell) -> None: + if self.re_init: + return + super().__init__() + self.re_init = False + self.type = 5 + self.shell_id = shell.id + self.value = [self.shell_id] + self.update_dependency(shell) + if ENABLE_OCC: + self.occ_solid = occh.create_solid(shell.occ_shell) + self.enrich_property({"occ_solid": self.occ_solid}) + self.register_item() + + +
+[docs] +def angle_of_two_arrays(a1: np.ndarray, a2: np.ndarray, rad: bool = True) -> float: + """ + @brief Returns the angle between two vectors. This is useful for calculating the rotation angle between a vector and another vector + @param a1 1D array of shape ( n_features ) + @param a2 2D array of shape ( n_features ) + @param rad If True the angle is in radians otherwise in degrees + @return Angle between a1 and a2 in degrees or radians depending on rad = True or False + """ + dot = np.dot(a1, a2) + norm = np.linalg.norm(a1) * np.linalg.norm(a2) + cos_value = np.round(dot / norm, 15) + if rad: + return np.arccos(cos_value) + else: + return np.rad2deg(np.arccos(cos_value))
+ + + +def bend( + point_cordinates, + radius: float = None, + mx_pt: np.ndarray = None, + mn_pt: np.ndarray = None, +): + coord_t = np.array(point_cordinates).T + if mx_pt is None: + mx_pt = np.max(coord_t, 1) + if mn_pt is None: + mn_pt = np.min(coord_t, 1) + cnt = 0.5 * (mn_pt + mx_pt) + scale = np.abs(mn_pt - mx_pt) + if radius is None: + radius = scale[1] * 2 + o_y = scale[1] * 0.5 + radius + for pt in point_cordinates: + xp = pt[0] + yp = pt[1] + ratio_l = xp / scale[0] + ypr = scale[1] * 0.5 - yp + Rp = radius + ypr + ly = scale[0] * (1 + ypr / radius) + lp = ratio_l * ly + thetp = lp / (Rp) + thetp = lp / (Rp) + pt[0] = Rp * np.sin(thetp) + pt[1] = o_y - Rp * np.cos(thetp) + return point_cordinates + + +
+[docs] +def project_array(array: np.ndarray, direct: np.ndarray) -> np.ndarray: + """ + Project an array to the specified direction. + """ + direct = direct / np.linalg.norm(direct) + return np.dot(array, direct) * direct
+ + + +
+[docs] +def shortest_distance_point_line( + line: Union[list, Segment, np.ndarray], p: Union[list, Segment, np.ndarray] +): + """ + Calculate the shortest distance between a point and a line (segment). + + :param line: The line (segment) to be examined. + :type line: Union[list, Segment, np.ndarray] + :param p: The point to be examined. + :type p: Union[list, Segment, np.ndarray] + :return: The relative coordinate of the point on the line (segment) and The shortest distance between the point and the line (segment). + :rtype: Tuple[Union[int, float], float] + """ + if isinstance(line, Segment): + pt1, pt2 = line.raw_value + p = p.value + else: + pt1, pt2 = line + s = pt2 - pt1 + lmbda = (p - pt1).dot(s) / s.dot(s) + if lmbda < 1 and lmbda > 0: + pt_compute = pt1 + lmbda * s + distance = np.linalg.norm(pt_compute - p) + return lmbda, distance + elif lmbda <= 0: + distance = np.linalg.norm(pt1 - p) + return 0, distance + else: + distance = np.linalg.norm(pt2 - p) + return 1, distance
+ + + +def bounding_box(pts: list): + pts = np.array(pts) + coord_t = np.array(pts).T + mx_pt = np.max(coord_t, 1) + mn_pt = np.min(coord_t, 1) + return mx_pt, mn_pt + + +def shortest_distance_line_line( + line1: Union[np.ndarray, Segment], line2: Union[np.ndarray, Segment] +): + if isinstance(line1, Segment): + line1 = line1.raw_value + if isinstance(line2, Segment): + line2 = line2.raw_value + pt11, pt12 = line1 + pt21, pt22 = line2 + s1 = pt12 - pt11 + s2 = pt22 - pt21 + s1square = np.dot(s1, s1) + s2square = np.dot(s2, s2) + term1 = s1square * s2square - (np.dot(s1, s2) ** 2) + term2 = s1square * s2square - (np.dot(s1, s2) ** 2) + if np.isclose(term1, 0) or np.isclose(term2, 0): + if np.isclose(s1[0], 0): + s_p = np.array([-s1[1], s1[0], 0]) + else: + s_p = np.array([s1[1], -s1[0], 0]) + l1 = np.random.randint(1, 4) * 0.1 + l2 = np.random.randint(6, 9) * 0.1 + pt1i = s1 * l1 + pt11 + pt2i = s2 * l2 + pt21 + si = pt2i - pt1i + dist = np.linalg.norm( + si * (si * s_p) / (np.linalg.norm(si) * np.linalg.norm(s_p)) + ) + return dist, np.array([pt1i, pt2i]) + lmbda1 = ( + np.dot(s1, s2) * np.dot(pt11 - pt21, s2) - s2square * np.dot(pt11 - pt21, s1) + ) / (s1square * s2square - (np.dot(s1, s2) ** 2)) + lmbda2 = -( + np.dot(s1, s2) * np.dot(pt11 - pt21, s1) - s1square * np.dot(pt11 - pt21, s2) + ) / (s1square * s2square - (np.dot(s1, s2) ** 2)) + condition1 = lmbda1 >= 1 + condition2 = lmbda1 <= 0 + condition3 = lmbda2 >= 1 + condition4 = lmbda2 <= 0 + if condition1 or condition2 or condition3 or condition4: + choices = [ + [line2, pt11, s2], + [line2, pt12, s2], + [line1, pt21, s1], + [line1, pt22, s1], + ] + result = np.zeros((4, 2)) + for i in range(4): + result[i] = shortest_distance_point_line(choices[i][0], choices[i][1]) + shortest_index = np.argmin(result.T[1]) + shortest_result = result[shortest_index] + pti1 = ( + shortest_result[0] * choices[shortest_index][2] + + choices[shortest_index][0][0] + ) + pti2 = choices[shortest_index][1] + # print(result) + else: + pti1 = pt11 + lmbda1 * s1 + pti2 = pt21 + lmbda2 * s2 + # print(lmbda1, lmbda2) + # print(pti1, pti2) + # print(np.dot(s1,pti2 - pti1), np.dot(s2,pti2 - pti1)) + distance = np.linalg.norm(pti1 - pti2) + return distance, np.array([pti1, pti2]) + + +def check_parallel_line_line( + line1: Union[np.ndarray, Segment], line2: Union[np.ndarray, Segment] +) -> tuple: + parallel = False + colinear = False + if isinstance(line1, Segment): + line1 = line1.raw_value + if isinstance(line2, Segment): + line2 = line2.raw_value + pt1, pt2 = line1 + pt3, pt4 = line2 + + def generate_link(): + t1 = np.random.randint(1, 4) * 0.1 + t2 = np.random.randint(5, 9) * 0.1 + pt12 = (1 - t1) * pt1 + t1 * pt2 + pt34 = (1 - t2) * pt3 + t2 * pt4 + norm_L3 = np.linalg.norm(pt34 - pt12) + while np.isclose(norm_L3, 0): + t1 = np.random.randint(1, 4) * 0.1 + t2 = np.random.randint(5, 9) * 0.1 + pt12 = (1 - t1) * pt1 + t1 * pt2 + pt34 = (1 - t2) * pt3 + t2 * pt4 + norm_L3 = np.linalg.norm(pt34 - pt12) + return pt12, pt34 + + pt12, pt34 = generate_link() + L1 = (pt2 - pt1) / np.linalg.norm(pt2 - pt1) + L2 = (pt4 - pt3) / np.linalg.norm(pt4 - pt3) + L3 = (pt34 - pt12) / np.linalg.norm(pt34 - pt12) + if np.isclose(np.linalg.norm(np.cross(L1, L2)), 0): + parallel = True + if np.isclose(np.linalg.norm(np.cross(L1, L3)), 0) and parallel: + colinear = True + return parallel, colinear + + +def check_overlap( + line1: Union[np.ndarray, Segment], line2: Union[np.ndarray, Segment] +) -> np.ndarray: + if isinstance(line1, Segment): + line1 = line1.raw_value + if isinstance(line2, Segment): + line2 = line2.raw_value + A, B = line1 + C, D = line2 + s = B - A + dist_s = np.linalg.norm(s) + norm_s = s / dist_s + c = C - A + dist_c = np.linalg.norm(c) + if np.isclose(dist_c, 0): + lmbda_c = 0 + else: + norm_c = c / dist_c + sign_c = -1 if np.isclose(np.sum(norm_c + norm_s), 0) else 1 + lmbda_c = sign_c * dist_c / dist_s + d = D - A + dist_d = np.linalg.norm(d) + if np.isclose(dist_d, 0): + lmbda_d = 0 + else: + norm_d = d / dist_d + sign_d = -1 if np.isclose(np.sum(norm_d + norm_s), 0) else 1 + lmbda_d = sign_d * dist_d / dist_s + indicator = np.zeros(4) + direction_cd = lmbda_d - lmbda_c + smaller = min(lmbda_c, lmbda_d) + larger = max(lmbda_c, lmbda_d) + pnt_list = np.array([A, B, C, D]) + if lmbda_c < 1 and lmbda_c > 0: + indicator[2] = 1 + if lmbda_d < 1 and lmbda_d > 0: + indicator[3] = 1 + if 0 < larger and 0 > smaller: + indicator[0] = 1 + if 1 < larger and 1 > smaller: + indicator[1] = 1 + return np.where(indicator == 1)[0], np.unique( + pnt_list[np.where(indicator == 1)[0]], axis=0 + ) + + +def get_face_area(points: list): + pts = np.array(points).T + x = pts[0] + y = pts[1] + result = 0 + for i in range(len(x)): + if i < len(x) - 1: + t = x[i] * y[i + 1] - x[i + 1] * y[i] + else: + t = x[i] * y[0] - x[0] * y[i] + result += t + return np.abs(result) * 0.5 + + +
+[docs] +def get_literal_vector(a: np.ndarray, d: bool): + """ + @brief This is used to create a vector which is perpendicular to the based vector on its left side ( d = True ) or right side ( d = False ) + @param a vector ( a ) + @param d True if on left or False if on right + @return A vector. + """ + z = np.array([0, 0, 1]) + # cross product of z and a + if d: + na = np.cross(z, a) + else: + na = np.cross(-z, a) + norm = np.linalg.norm(na, na.shape[0]) + return na / norm
+ + + +
+[docs] +def bisect_angle( + a1: Union[np.ndarray, Segment], a2: Union[np.ndarray, Segment] +) -> np.ndarray: + """ + @brief Angular bisector between two vectors. The result is a vector splitting the angle between two vectors uniformly. + @param a1 1xN numpy array + @param a2 1xN numpy array + @return the bisector vector + """ + if isinstance(a1, Segment): + a1 = a1.vector + if isinstance(a2, Segment): + a2 = a2.vector + norm1 = np.linalg.norm(a1) + norm2 = np.linalg.norm(a2) + bst = a1 / norm1 + a2 / norm2 + norm3 = np.linalg.norm(bst) + # The laterality indicator a2 norm3 norm3 + if norm3 == 0: + opt = get_literal_vector(a2, True) + else: + opt = bst / norm3 + return opt
+ + + +def translate(pts: np.ndarray, direct: np.ndarray) -> np.ndarray: + pts = np.array( + [ + np.array(list(i.Coord())) if isinstance(i, gp_Pnt) else np.array(i) + for i in pts + ] + ) + pts = [i + direct for i in pts] + return list(pts) + + +def center_of_mass(pts: np.ndarray) -> np.ndarray: + pts = np.array( + [ + np.array(list(i.Coord())) if isinstance(i, gp_Pnt) else np.array(i) + for i in pts + ] + ) + + return np.mean(pts.T, axis=1) + + +def distance(p1: Pnt, p2: Pnt) -> float: + return np.linalg.norm(p1.value - p2.value) + + +def rotate( + pts: np.ndarray, + angle_x: float = 0, + angle_y: float = 0, + angle_z: float = 0, + cnt: np.ndarray = None, +) -> np.ndarray: + pts = np.array( + [ + np.array(list(i.Coord())) if isinstance(i, gp_Pnt) else np.array(i) + for i in pts + ] + ) + com = center_of_mass(pts) + if cnt is None: + cnt = np.array([0, 0, 0]) + t_vec = cnt - com + pts += t_vec + rot_x = np.array( + [ + [1, 0, 0], + [0, np.cos(angle_x), -np.sin(angle_x)], + [0, np.sin(angle_x), np.cos(angle_x)], + ] + ) + rot_y = np.array( + [ + [np.cos(angle_y), 0, np.sin(angle_y)], + [0, 1, 0], + [-np.sin(angle_y), np.cos(angle_y), 0], + ] + ) + rot_z = np.array( + [ + [np.cos(angle_z), -np.sin(angle_z), 0], + [np.sin(angle_z), np.cos(angle_z), 0], + [0, 0, 1], + ] + ) + R = rot_x @ rot_y @ rot_z + rt_pts = pts @ R + r_pts = rt_pts - t_vec + return r_pts + + +def get_center_of_mass(pts: np.ndarray) -> np.ndarray: + pts = np.array( + [ + np.array(list(i.Coord())) if isinstance(i, gp_Pnt) else np.array(i) + for i in pts + ] + ) + + return np.mean(pts.T, axis=1) + + +def linear_interpolate(pts: np.ndarray, num: int): + for i, pt in enumerate(pts): + if i == len(pts) - 1: + break + else: + interpolated_points = np.linspace(pt, pts[i + 1], num=num + 2)[1:-1] + return interpolated_points + + +def interpolate_polygon( + plg: np.ndarray, step_len: float = None, num: int = None, isclose: bool = True +): + def deter_dum(line: np.ndarray): + ratio = step_len / np.linalg.norm(line[0] - line[1]) + if ratio > 0.75: + num = 0 + elif (ratio > 0.4) and (ratio <= 0.75): + num = 1 + elif (ratio > 0.3) and (ratio <= 0.4): + num = 2 + elif (ratio > 0.22) and (ratio <= 0.3): + num = 3 + elif (ratio > 0.19) and (ratio <= 0.22): + num = 4 + elif (ratio > 0.14) and (ratio <= 0.19): + num = 5 + elif ratio <= 0.14: + num = 7 + return num + + new_plg = plg + pos = 0 + n = 1 + if not isclose: + n = 2 + for i, pt in enumerate(plg): + if i == len(plg) - n: + break + line = np.array([pt, plg[i + 1]]) + if num is not None: + p_num = num + else: + p_num = deter_dum(line) + insert_p = linear_interpolate(line, p_num) + new_plg = np.concatenate((new_plg[: pos + 1], insert_p, new_plg[pos + 1 :])) + pos += p_num + 1 + return new_plg + + +
+[docs] +def p_rotate( + pts: np.ndarray, + angle_x: float = 0, + angle_y: float = 0, + angle_z: float = 0, + cnt: np.ndarray = None, +) -> np.ndarray: + """ + Rotate points around a center point + + :param pts: The points to be rotated + :type pts: np.ndarray + :param angle_x: The angle to rotate around x-axis, defaults to 0 + :type angle_x: float, optional + :param angle_y: The angle to rotate around y-axis, defaults to 0 + :type angle_y: float, optional + :param angle_z: The angle to rotate around z-axis, defaults to 0 + :type angle_z: float, optional + :param cnt: The center point to rotate around, defaults to None + :type cnt: np.ndarray, optional + :return: The rotated points + :rtype: np.ndarray + + """ + pts = np.array( + [ + np.array(list(i.Coord())) if isinstance(i, gp_Pnt) else np.array(i) + for i in pts + ] + ) + com = get_center_of_mass(pts) + if cnt is None: + cnt = np.array([0, 0, 0]) + t_vec = cnt - com + pts += t_vec + rot_x = np.array( + [ + [1, 0, 0], + [0, np.cos(angle_x), -np.sin(angle_x)], + [0, np.sin(angle_x), np.cos(angle_x)], + ] + ) + rot_y = np.array( + [ + [np.cos(angle_y), 0, np.sin(angle_y)], + [0, 1, 0], + [-np.sin(angle_y), np.cos(angle_y), 0], + ] + ) + rot_z = np.array( + [ + [np.cos(angle_z), -np.sin(angle_z), 0], + [np.sin(angle_z), np.cos(angle_z), 0], + [0, 0, 1], + ] + ) + R = rot_x @ rot_y @ rot_z + rt_pts = pts @ R + r_pts = rt_pts - t_vec + return r_pts
+ + + +
+[docs] +def get_random_pnt( + xmin, xmax, ymin, ymax, zmin=0, zmax=0, numpy_array=True +) -> Union[Pnt, np.ndarray]: + """ + Get a random point within the specified range + + :param xmin: The minimum value of x + :type xmin: int + :param xmax: The maximum value of x + :type xmax: int + :param ymin: The minimum value of y + :type ymin: int + :param ymax: The maximum value of y + :type ymax: int + :param zmin: The minimum value of z, defaults to 0 + :type zmin: int, optional + :param zmax: The maximum value of z, defaults to 0 + :type zmax: int, optional + :param numpy_array: If True, return a numpy array, otherwise return a Pnt object, defaults to True + :type numpy_array: bool, optional + :return: The random point + :rtype: Union[Pnt, np.ndarray] + + """ + random_x = np.random.randint(xmin, xmax) + random_y = np.random.randint(ymin, ymax) + if zmin == 0 and zmax == 0: + random_z = 0 + else: + random_z = np.random.randint(zmin, zmax) + if numpy_array: + result = np.array([random_x, random_y, random_z]) + else: + result = Pnt([random_x, random_y, random_z]) + + return result
+ + + +
+[docs] +def get_random_line(xmin, xmax, ymin, ymax, zmin=0, zmax=0): + """ + Get a random line within the specified range + + :param xmin: The minimum value of x + :type xmin: int + :param xmax: The maximum value of x + :type xmax: int + :param ymin: The minimum value of y + :type ymin: int + :param ymax: The maximum value of y + :type ymax: int + :param zmin: The minimum value of z, defaults to 0 + :type zmin: int, optional + :param zmax: The maximum value of z, defaults to 0 + :type zmax: int, optional + :return: The random line + :rtype: np.ndarray + """ + + pt1 = get_random_pnt(xmin, xmax, ymin, ymax, zmin, zmax) + pt2 = get_random_pnt(xmin, xmax, ymin, ymax, zmin, zmax) + return np.array([pt1, pt2])
+ + + +
+[docs] +def find_intersect_node_on_edge( + line1: Segment, line2: Segment, update_property: dict = None +) -> tuple: + """Find possible intersect node on two lines + + :param line1: The first line + :type line1: Union[np.ndarray, Segment] + :param line2: The second line + :type line2: Union[np.ndarray, Segment] + :param update_property: The property to update, defaults to None + :type update_property: dict, optional + :return: The possible intersect node on the two lines + :rtype: tuple + """ + result = [] + parallel, colinear = check_parallel_line_line(line1, line2) + if parallel: + if colinear: + index, coords = check_overlap(line1, line2) + if len(index) < 4: + for ind in index: + if ind in [0, 1]: + pnt_candidate = [line1.start_pnt, line1.end_pnt] + result.append((line2.id, pnt_candidate[ind])) + else: + pnt_candidate = [line2.start_pnt, line2.end_pnt] + result.append((line1.id, pnt_candidate[ind - 2])) + + else: + distance = shortest_distance_line_line(line1, line2) + intersect = np.isclose(distance[0], 0) + if intersect: + intersect_pnt = Pnt(distance[1][0]) + if update_property is not None: + intersect_pnt.enrich_property(update_property) + update_source(intersect_pnt) + result.append((line1.id, intersect_pnt.id)) + result.append((line2.id, intersect_pnt.id)) + return result
+ + + +
+[docs] +def read_from_csv(file_path: str, delimiter: str = ",") -> list: + """Read data from a csv file + + :param file_path: The path of the csv file + :type file_path: str + :param delimiter: The delimiter of the csv file, defaults to "," + :type delimiter: str, optional + :return: The data read from the csv file + :rtype: list + """ + return np.genfromtxt(file_path, delimiter=delimiter, skip_header=1, dtype=float)
+ + + +def _find_proper_loop(exam_loop: list): + """This is a private method to find the proper loop. It is seperated from the class CreateWallByPoints to + be able to use in multiprocessing. + """ + logger.debug(f"processing loop:{exam_loop}") + # center_segments = [] + + # for i, pnt in enumerate(exam_loop): + # if list(get_from_source(oid=pnt))[0].property["CWBP"]["in_wall"]: + # return None + for i, pnt in enumerate(exam_loop): + ind_l = ( + (i - 1) % len(exam_loop) if (i - 1) > 0 else -(-(i - 1) % len(exam_loop)) + ) + exam_segment = Segment(exam_loop[ind_l], pnt) + # if "CWBP" not in exam_segment.property: + # exam_segment.enrich_property({"CWBP": {"active": True, "position": "side"}}) + # for seg in center_segments: + # dist, intersect = shortest_distance_line_line(exam_segment, seg) + # if np.isclose(dist, 0): + # exam_segment.property["CWBP"].update( + # {"examine": True, "position": "imagine"} + # ) + # return None + exam_segment.property["CWBP"].update({"examine": True}) + if not exam_segment.property["CWBP"]["active"]: + logger.debug(f"Inactive segment, tossing:{exam_segment}") + return None + if exam_segment.property["CWBP"]["position"] == "imagine": + logger.debug(f"Imagine segment, tossing:{exam_segment}") + return None + loop = [] + for i in exam_loop: + for j in get_from_source(oid=i): + loop.append(j.value) + area = get_face_area(loop) + logger.debug(f"exam loop area:{exam_loop}, {area}") + if np.isclose(area, 0, 1e-3): + logger.debug(f"tossing loop:{exam_loop}") + return None + # if pnt in in_wall_points.items(): + # in_wall_point_count += 1 + # if exam_segment.id in imagine_segments.keys(): + # imagine_segment_count += 1 + # if in_wall_point_count > 0 or imagine_segment_count > 0: + # return None + return exam_loop + + +class CreateWallByPoints: + """ + Create a wall by points. The wall is defined by a list of points. The thickness and height of the wall are also required. The wall can be closed or open. + + :param coords: The coordinates of the wall + :type coords: list + :param th: The thickness of the wall + :type th: float + :param height: The height of the wall + :type height: float + :param is_close: Whether the wall is closed + :type is_close: bool + """ + + def __init__(self, coords: list, th: float, height: float, is_close: bool = True): + # The coordinates of the wall + self.coords = coords + # The height of the wall + self.height = height + # The thickness of the wall + self.th = th + # Whether the wall is closed + self.is_close = is_close + # The volume of the wall + self.volume = 0 + # The center points of the wall + self.center_pnts = [] + # The side points of the wall + self.side_pnts = [] + # The side segments of the wall + self.side_segments = [] + # The left points of the wall + self.left_pnts = [] + # The right points of the wall + self.right_pnts = [] + # The left segments of the wall + self.left_segments = [] + # The right segments of the wall + self.right_segments = [] + # The digraph of the points + self.digraph_points = {} + # The result loops of the wall. Result loops are loops that are valid and can be used to create faces. + self.result_loops = [] + # Imagine segments are segments that are not in the wall but are used to create the wall. + self.imagine_segments = {} + # initialize the points. + self.init_points(self.coords, {"position": "center", "active": True}) + # indices of the components which are involved in the wall. + self.index_components = {} + # Points that are in the wall + self.point_in_wall = {} + # The edges to be modified. + self.edges_to_be_modified = {} + self.create_sides() + self.find_overlap_node_on_edge() + print(self.edges_to_be_modified) + self.modify_edge() + self.postprocessing() + + def init_points(self, points: list, prop: dict = None) -> None: + """ + Initialize the points of the wall. The property of the points can be enriched by the prop parameter. + + :param points: list of coordinates + :type points: list + :param prop: dict of properties + :type prop: dict + """ + for i, p in enumerate(points): + if not isinstance(p, Pnt): + p = Pnt(p) + self.enrich_component(p, prop.copy()) + self.center_pnts.append(p) + + def update_index_component(self) -> None: + """ + Update the index of the components + """ + self.index_components = {} + for i in get_from_source(obj_type="point"): + is_CWBP = "CWBP" in i.property + if not is_CWBP: + continue + is_active = i.property["CWBP"]["active"] + if is_active: + item_id = i.id + item_name = TYPE_INDEX[i.property["type"]] + if item_name not in self.index_components: + self.index_components.update({item_name: {item_id}}) + else: + self.index_components[item_name].add(item_id) + for i in get_from_source(obj_type="segment"): + is_CWBP = "CWBP" in i.property + if not is_CWBP: + continue + is_active = i.property["CWBP"]["active"] + if is_active: + item_id = i.id + item_name = TYPE_INDEX[i.property["type"]] + if item_name not in self.index_components: + self.index_components.update({item_name: {item_id}}) + else: + self.index_components[item_name].add(item_id) + + def enrich_component(self, component: TopoObj, prop: dict = None) -> TopoObj: + """ + Enrich the property of the component + + :param component: The component to be enriched + :type component: TopoObj + :param prop: The property to be enriched + :type prop: dict""" + if not isinstance(component, TopoObj): + raise ValueError("Component must be a TopoObj") + component.enrich_property({"CWBP": prop}) + update_source(component) + + def compute_index(self, ind, length) -> int: + """ + Compute the index of the component. The index will be periodic if it is out of the range. + + :param ind: The index + :type ind: int + :param length: The length of the component + :type length: int + """ + return ind % length if ind > 0 else -(-ind % length) + + def compute_support_vector(self, seg1: Segment, seg2: Segment = None) -> tuple: + """ + Compute the support vector of the wall. The support vector is the vector perpendicular to the wall. Specifically in this case it will always on the left side of the wall. + + :param seg1: The first segment + :type seg1: Segment + :param seg2: The second segment + :type seg2: Segment + """ + lit_vector = get_literal_vector(seg1.vector, True) + if seg2 is None: + th = self.th * 0.5 + angle = np.pi / 2 + sup_vector = lit_vector + else: + sup_vector = bisect_angle(-seg2.vector, seg1) + angle = angle_of_two_arrays(lit_vector, sup_vector) + if angle > np.pi / 2: + sup_vector *= -1 + angle = np.pi - angle + th = np.abs(self.th * 0.5 / np.cos(angle)) + return sup_vector, th + + def create_sides(self) -> None: + """ + Create the sides of the wall + """ + close = 1 if self.is_close else 0 + for i in range(len(self.center_pnts) + close): + # The previous index + index_l = self.compute_index(i - 1, len(self.center_pnts)) + # The current index + index = self.compute_index(i, len(self.center_pnts)) + # The next index + index_n = self.compute_index(i + 1, len(self.center_pnts)) + # A None on the second segment means the wall is not closed. The support vector will be computed based on the first segment. + if index == 0 and not self.is_close: + # The segment from the current index to the next index + seg_current_next = Segment( + self.center_pnts[index], self.center_pnts[index_n] + ) + self.enrich_component( + seg_current_next, {"position": "center", "active": True} + ) + seg1 = seg_current_next + seg2 = None + elif index == len(self.center_pnts) - 1 and not self.is_close: + # The segment from the previous index to the current index + seg_previous_current = Segment( + self.center_pnts[index_l], self.center_pnts[index] + ) + self.enrich_component( + seg_previous_current, {"position": "center", "active": True} + ) + seg1 = seg_previous_current + seg2 = None + # Compute the support vector based on the two segments + else: + # The segment from the current index to the next index + seg_current_next = Segment( + self.center_pnts[index], self.center_pnts[index_n] + ) + self.enrich_component( + seg_current_next, {"position": "center", "active": True} + ) + # The segment from the previous index to the current index + seg_previous_current = Segment( + self.center_pnts[index_l], self.center_pnts[index] + ) + self.enrich_component( + seg_previous_current, {"position": "center", "active": True} + ) + seg1 = seg_current_next + seg2 = seg_previous_current + su_vector, su_len = self.compute_support_vector(seg1, seg2) + # Compute the left and right points + lft_pnt = Pnt(su_vector * su_len + self.center_pnts[index].coord) + rgt_pnt = Pnt(-su_vector * su_len + self.center_pnts[index].coord) + self.left_pnts.append(lft_pnt) + self.enrich_component(lft_pnt, {"position": "left", "active": True}) + self.right_pnts.append(rgt_pnt) + self.enrich_component(rgt_pnt, {"position": "right", "active": True}) + # Reverse the right points + self.right_pnts = self.right_pnts[::-1] + self.side_pnts = self.left_pnts + self.right_pnts + # Create the segments of the sides + for i, pnt in enumerate(self.side_pnts): + ind_n = self.compute_index(i + 1, len(self.side_pnts)) + seg_side = Segment(pnt, self.side_pnts[ind_n]) + if ( + i == len(self.left_pnts) - 1 or i == len(self.side_pnts) - 1 + ) and not self.is_close: + self.enrich_component( + seg_side, {"position": "special boundary", "active": True} + ) + else: + self.enrich_component(seg_side, {"position": "side", "active": True}) + self.side_segments.append(seg_side) + self.update_digraph( + self.side_pnts[i].id, self.side_pnts[ind_n].id, build_new_edge=False + ) + self.update_index_component() + + def update_digraph( + self, + start_node: int, + end_node: int, + insert_node: int = None, + build_new_edge: bool = True, + ) -> None: + """ + Update the directed graph + + :param start_node: The start node + :type start_node: int + :param end_node: The end node + :type end_node: int + :param insert_node: The inserting node + :type insert_node: int + :param build_new_edge: Whether to build a new edge + :type build_new_edge: bool + """ + self.update_index_component() + points = { + i: list(get_from_source(oid=i))[0] for i in self.index_components["point"] + } + + if start_node not in self.index_components["point"]: + raise Exception(f"Unrecognized start node: {start_node}.") + if end_node not in self.index_components["point"]: + raise Exception(f"Unrecognized end node: {end_node}.") + if (insert_node not in self.index_components["point"]) and ( + insert_node is not None + ): + raise Exception(f"Unrecognized inserting node: {insert_node}.") + if start_node in self.digraph_points: + # Directly update the end node + if insert_node is None: + self.digraph_points[start_node].append(end_node) + # Insert a new node between the start and end nodes + # Basically, the inserted node replaces the end node + # If build new edge is True, a new edge consists of inserted node and the new end node will be built. + else: + end_node_list_index = self.digraph_points[start_node].index(end_node) + self.digraph_points[start_node][end_node_list_index] = insert_node + if build_new_edge: + edge1 = Segment( + points[start_node], + points[insert_node], + ) + self.enrich_component( + edge1, {"position": "digraph", "active": True} + ) + edge2 = Segment(points[insert_node], points[end_node]) + self.enrich_component( + edge2, {"position": "digraph", "active": True} + ) + self.digraph_points.update({insert_node: [end_node]}) + else: + # If there is no edge for the start node, a new edge will be built. + if insert_node is None: + if build_new_edge: + edge = Segment(points[start_node], points[end_node]) + self.enrich_component(edge, {"position": "digraph", "active": True}) + self.digraph_points.update({start_node: [end_node]}) + self.digraph_points.update({start_node: [end_node]}) + else: + raise Exception("No edge found for insertion option.") + + def delete_digraph(self, start_node: int, end_node: int) -> None: + """ + Delete the directed graph + + :param start_node: The start node + :type start_node: int + :param end_node: The end node + :type end_node: int + """ + if start_node in self.digraph_points: + if end_node in self.digraph_points[start_node]: + self.digraph_points[start_node].remove(end_node) + else: + raise Exception(f"No edge found for start node: {start_node}.") + + def loop_generator(self, simple_cycles_generator) -> None: + """ + Generate the loops of the wall + """ + + for loop in simple_cycles_generator: + if len(loop) < 3: + logger.debug(f"tossing loop:{loop}") + continue + else: + yield loop + + def find_overlap_node_on_edge(self) -> None: + """ + Find the overlap node on the edge. This function can be run in concurrent mode to speed up the process.If the concurrent mode is not possible or not enabled, the function will fall back to serial mode. + """ + visited = [] + line_pairs = [] + new_property = {"CWBP": {"position": "digraph", "active": True}} + for line1 in self.side_segments: + if not line1.property["self_edge"]: + for line2 in self.side_segments: + if not line2.property["self_edge"]: + if line1.id != line2.id: + if [line1.id, line2.id] not in visited or [ + line2.id, + line1.id, + ] not in visited: + visited.append([line1.id, line2.id]) + visited.append([line2.id, line1.id]) + line_pairs.append((line1, line2, new_property)) + if ENABLE_CONCURRENT_MODE: + logger.info("Using concurrent mode to find intersect nodes.") + num_processes = multiprocessing.cpu_count() + with multiprocessing.Pool(num_processes) as pool: + results = pool.starmap(find_intersect_node_on_edge, line_pairs) + else: + logger.info( + "Concurrent model is not enabled. Fall back to use serial mode to find intersect nodes." + ) + results = [find_intersect_node_on_edge(*pair) for pair in line_pairs] + for result in results: + if result is not None: + logger.debug(f"result:{result}") + for pair in result: + seg = list(get_from_source(oid=pair[0]))[0] + pnt = list(get_from_source(oid=pair[1]))[0] + if pnt.id in seg.value: + continue + if pair[0] not in self.edges_to_be_modified: + self.edges_to_be_modified.update({pair[0]: [pair[1]]}) + else: + self.edges_to_be_modified[pair[0]].append(pair[1]) + + def modify_edge(self): + """ + Modify the edge based on the overlap nodes. + """ + self.update_index_component() + edges = {} + for i in self.index_components["segment"]: + item = list(get_from_source(oid=i))[0] + if item.property["CWBP"]["position"] != "center": + edges.update({i: item}) + points = {} + for i in self.index_components["point"]: + item = list(get_from_source(oid=i))[0] + if item.property["CWBP"]["position"] != "center": + points.update({i: item}) + + for edge_id, nodes_id in self.edges_to_be_modified.items(): + # edge = component_lib[edge_id]["segment"] + edge = edges[edge_id] + nodes = [points[i] for i in nodes_id] + edge_0_coords = edge.raw_value[0] + nodes_coords = [node.value for node in nodes] + distances = [np.linalg.norm(i - edge_0_coords) for i in nodes_coords] + order = np.argsort(distances) + nodes = [nodes[i] for i in order] + nodes_id_ordered = [i.id for i in nodes] + # component_lib[edge_id]["segment"].property["CWBP"]["active"] = False + edges[edge_id].property["CWBP"]["active"] = False + self.delete_digraph(edge.value[0], edge.value[1]) + update_source(edges[edge_id]) + pts_list = [edge.value[0]] + nodes_id_ordered + [edge.value[1]] + for i, nd in enumerate(pts_list): + if i == 0: + continue + self.update_digraph(pts_list[i - 1], nd) + # self.enrich_component(seg, {"position": "side", "active": True}) + # update_source(seg) + # self.imaginary_segments.update({seg.id: seg}) + + def check_pnt_in_wall(self): + """ + Check if the points are in the wall.""" + self.update_index_component() + edges = {} + in_wall_points = [] + digraph_copy = self.digraph_points.copy() + for i in self.index_components["segment"]: + item = list(get_from_source(oid=i))[0] + if item.property["CWBP"]["position"] == "center": + edges.update({i: item}) + points = {} + for i in self.index_components["point"]: + item = list(get_from_source(oid=i))[0] + if item.property["CWBP"]["position"] != "center": + points.update({i: item}) + for ind, point in points.items(): + point.property["CWBP"].update({"in_wall": None}) + update_source(point) + for ind2, edge in edges.items(): + lmbda, dist = shortest_distance_point_line(edge, point) + if dist < 0.6 * 0.5 * self.th: + logger.debug( + "pnt:%s,dist:%s,lmbda:%s, vec:%s", + point.id, + dist, + lmbda, + edge.id, + ) + # self.point_in_wall.update({point: dist}) + point.property["CWBP"].update({"in_wall": lmbda}) + in_wall_points.append(point.id) + for i, j in self.digraph_points.items(): + if i in in_wall_points: + del digraph_copy[i] + logger.debug(f"delete node:{i}") + continue + for k in j: + if k in in_wall_points: + j.remove(k) + logger.debug(f"delete edge:{i}-{k}") + self.digraph_points = digraph_copy + logger.debug(f"digraph:{self.digraph_points}") + + def check_segment_intersect_wall(self): + """ + Check if the segments intersect with the wall.""" + self.update_index_component() + edges = {} + for i, seg in self.digraph_points.items(): + for j in seg: + edge = Segment( + list(get_from_source(oid=i))[0], list(get_from_source(oid=j))[0] + ) + if "CWBP" not in edge.property: + edge.enrich_property({"CWBP": {"active": True, "position": "side"}}) + update_source(edge) + # self.enrich_component(edge, {"position": "digraph", "active": True}) + edges.update({edge.id: edge}) + center_segments = [] + for i in self.index_components["segment"]: + item = list(get_from_source(oid=i))[0] + if item.property["CWBP"]["position"] == "center": + center_segments.append(item) + for ind, edge in edges.items(): + if edge.property["CWBP"]["position"] == "special boundary": + continue + for seg2 in center_segments: + dist, pnt = shortest_distance_line_line(edge, seg2) + intersect = np.isclose(dist, 0) + if intersect: + logger.debug( + "seg:%s,seg2:%s,dist:%s,pnt:%s", + edge.value, + seg2.value, + dist, + pnt, + ) + edge.property["CWBP"].update({"position": "imagine"}) + update_source(edge) + logger.debug(f"Find imagine edge {edge.id}: {edge.value}") + self.delete_digraph(edge.value[0], edge.value[1]) + update_source(edge) + logger.debug(f"Delete digraph {edge.value[0]}-{edge.value[1]}") + break + + def postprocessing(self): + """ + Postprocessing the wall. + Update the digraph of the wall. + Find the proper loops of the wall. + """ + self.update_index_component() + self.check_pnt_in_wall() + self.check_segment_intersect_wall() + G = nx.from_dict_of_lists(self.digraph_points, create_using=nx.DiGraph) + simple_cycles = nx.simple_cycles(G) + if ENABLE_CONCURRENT_MODE: + logger.info("Using concurrent mode to count points in loops.") + num_processes = multiprocessing.cpu_count() + with multiprocessing.Pool(num_processes) as pool: + for result in pool.imap( + _find_proper_loop, self.loop_generator(simple_cycles) + ): + if result is not None: + self.result_loops.append(result) + else: + logger.info( + "Concurrent model is not enabled. Fall back to use serial mode to find proper loops." + ) + for loop in self.loop_generator(simple_cycles): + result = _find_proper_loop(loop) + if result is not None: + self.result_loops.append(result) + logger.debug(f"result loops:{self.result_loops}") + + def rank_result_loops(self): + """Rank the result loops based on the area of the loops.""" + points = {} + for i in get_from_source(obj_type="point"): + points.update({i.id: i}) + areas = np.zeros(len(self.result_loops)) + for i, lp in enumerate(self.result_loops): + lp_coord = [points[i].value for i in lp] + area = get_face_area(lp_coord) + areas[i] = area + rank = np.argsort(areas).tolist() + self.volume = (2 * np.max(areas) - np.sum(areas)) * self.height * 1e-6 + self.result_loops = sorted( + self.result_loops, + key=lambda x: rank.index(self.result_loops.index(x)), + reverse=True, + ) + + return self.result_loops + + def Shape(self): + """Create the shape of the wall.""" + loop_r = self.rank_result_loops() + if not ENABLE_OCC: + raise Exception("OpenCASCADE is not enabled.") + logger.debug(f"result loops:{loop_r}") + points = {} + for i in get_from_source(obj_type="point"): + points.update({i.id: i}) + print(loop_r) + boundary = [points[i].occ_pnt for i in loop_r[0]] + logger.debug("boundary:") + logger.debug([points[i].value for i in loop_r[0]]) + logger.debug("Inner loops:") + for i in loop_r[1:]: + logger.debug([points[j].value for j in i]) + poly0 = occh.create_polygon(boundary) + poly_r = poly0 + for i, h in enumerate(loop_r): + if i == 0: + continue + h = [points[i].occ_pnt for i in h] + poly_c = occh.create_polygon(h) + poly_r = occh.cut(poly_r, poly_c) + poly = poly_r + if not np.isclose(self.height, 0): + wall_compound = occh.create_prism(poly, [0, 0, self.height]) + faces = occh.explore_topo(wall_compound, "face") + wall_shell = occh.sew_face(faces) + wall = occh.create_solid(wall_shell) + return wall + else: + return poly + + def visualize_graph(self): + """Visualize the graph of the wall.""" + layout = nx.spring_layout(self.G) + # Draw the nodes and edges + nx.draw( + self.G, + pos=layout, + with_labels=True, + node_color="skyblue", + font_size=10, + node_size=500, + ) + plt.title("NetworkX Graph Visualization") + plt.show() + + def visualize( + self, + display_polygon: bool = True, + display_central_path: bool = False, + all_polygons: bool = False, + ): + """ + Visualize the wall. + + :param display_polygon: Whether to display the polygons, defaults to True + :type display_polygon: bool, optional + :param display_central_path: Whether to display the central path, defaults to False + :type display_central_path: bool, optional + :param all_polygons: Whether to display all polygons, defaults to False + :type all_polygons: bool, optional + + """ + # Extract the x and y coordinates and IDs + a = self.index_components["point"] + components = {} + for i in get_from_source(obj_type="point"): + if i.id in a: + components.update({i.id: i}) + points = [components[i] for i in a] + x = [point.value[0] for point in points] + y = [point.value[1] for point in points] + ids = list(a) # Get the point IDs + # Create a scatter plot in 2D + plt.subplot(1, 2, 1) + # plt.figure() + plt.scatter(x, y) + + # Annotate points with IDs + for i, (xi, yi) in enumerate(zip(x, y)): + plt.annotate(f"{ids[i]}", (xi, yi), fontsize=12, ha="right") + + if display_polygon: + if all_polygons: + display_loops = nx.simple_cycles(self.G) + else: + display_loops = self.result_loops + for lp in display_loops: + coords = [components[i].value for i in lp] + x = [point[0] for point in coords] + y = [point[1] for point in coords] + plt.plot(x + [x[0]], y + [y[0]], linestyle="-", marker="o") + if display_central_path: + center_path_coords = np.array([i.value for i in self.center_pnts]) + if self.is_close: + center_path_coords = np.vstack( + (center_path_coords, center_path_coords[0]) + ) + talist = center_path_coords.T + x1 = talist[0] + y1 = talist[1] + plt.plot(x1, y1, "bo-", label="central path", color="b") + + # Create segments by connecting consecutive points + + # a_subtitute = np.array(self.side_coords) + # toutput1 = a_subtitute.T + # x2 = toutput1[0] + # y2 = toutput1[1] + # plt.plot(x2, y2, 'ro-', label='outer line') + + # Set labels and title + plt.xlabel("X-axis") + plt.ylabel("Y-axis") + plt.axis("equal") + plt.title("Points With Polygons detected") + + plt.subplot(1, 2, 2) + # layout = nx.spring_layout(self.G) + G = nx.from_dict_of_lists(self.digraph_points, create_using=nx.DiGraph) + layout = nx.circular_layout(G) + # Draw the nodes and edges + nx.draw( + G, + pos=layout, + with_labels=True, + node_color="skyblue", + font_size=10, + node_size=300, + ) + plt.title("Multi-Digraph") + plt.tight_layout() + # Show the plot + plt.show() + + +# IN_CONCURRENT_MODE = False + +# if ENABLE_CONCURRENT_MODE: +# try: +# manager1 = multiprocessing.Manager() +# # manager2 = multiprocessing.Manager() +# count_gid = manager1.list(count_gid) +# count_id = manager1.Value("i", count_id) +# TYPE_INDEX = manager1.dict(TYPE_INDEX) +# component_lib = manager1.dict(component_lib) +# component_container = manager1.dict(component_container) +# IN_CONCURRENT_MODE = True +# except RecursionError as err: +# logging.warning( +# f"Concurrent mode is disabled due to {err}, fallback to single process mode." +# ) +# IN_CONCURRENT_MODE = False +
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+ + + + \ No newline at end of file diff --git a/_modules/amworkflow/geometry/geometry.html b/_modules/amworkflow/geometry/geometry.html new file mode 100644 index 0000000..a23cda8 --- /dev/null +++ b/_modules/amworkflow/geometry/geometry.html @@ -0,0 +1,654 @@ + + + + + + amworkflow.geometry.geometry — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + +
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+ +

Source code for amworkflow.geometry.geometry

+import logging
+import typing
+from pathlib import Path
+
+import matplotlib.pyplot as plt
+import numpy as np
+import pandas as pd
+from OCC.Core.StlAPI import StlAPI_Writer
+from OCC.Core.TopoDS import TopoDS_Shape
+from OCC.Extend.DataExchange import write_step_file, write_stl_file
+from scipy.optimize import fsolve
+
+import amworkflow.geometry.builtinCAD as builtincad
+import amworkflow.occ_helpers as occ_helpers
+
+typing.override = lambda x: x
+
+
+
+[docs] +class Geometry: + """Base class with API for any geometry creation.""" + + def __init__(self, *args, **kwargs) -> None: + self.logger = logging.getLogger(__name__ + "." + self.__class__.__name__) + +
+[docs] + @typing.override + def create( + self, out_step: Path, out_path: Path, out_stl: Path | None = None + ) -> None: + """Create step and stl file from the geometry. + + To be defined in child classes. + + Args: + out_step: File path of step file. + out_path: File path of file containing the print path points (csv). + out_path: File path of file containing the print path points (csv). + + out_stl: Optional file path of stl file. + + Returns: + + """ + raise NotImplementedError
+
+ + + +
+[docs] +class GeometryOCC(Geometry): + """Geometry base class for OCC geometry creation.""" + + def __init__( + self, + stl_linear_deflection: float = 0.001, + stl_angular_deflection: float = 0.1, + **kwargs, + ) -> None: + """Geometry case class for OCC geometry creation. + + Args: + stl_linear_deflection: Linear deflection parameter of OCC stl export (Lower, more accurate mesh; OCC default is 0.001) + stl_angular_deflection: Angular deflection parameter of OCC stl export (Lower, more accurate_mesh: OCC default is 0.5). + """ + + self.stl_linear_deflection = stl_linear_deflection + self.stl_angular_deflection = stl_angular_deflection + + super().__init__(**kwargs) + +
+[docs] + @typing.override + def geometry_spawn(self) -> TopoDS_Shape: + """Define geometry using occ fct or own. + + To be overwritten by user. + + Args: + + Returns: + shape: OCC shape. + points: list of centerline points (x,y,z) + """ + raise NotImplementedError
+ + +
+[docs] + def create( + self, out_step: Path, out_path: Path, out_stl: Path | None = None + ) -> None: + """Create step and stl file from OCC shape geometry created by function geometry_spawn. + + Args: + out_step: File path of step file. + out_path: File path of file containing the print path points. + out_stl: File path of stl file. + + Returns: + + """ + self.shape, self.points = self.geometry_spawn() + + # stl_write = StlAPI_Writer() + # stl_write.SetASCIIMode(True) # Set to False for binary STL output + # status = stl_write.Write(self.shape, str(out_stl)) + # print(status) + # if status: + # print("Done!") + + if out_stl: + write_stl_file( + self.shape, + str(out_stl), + mode="binary", + linear_deflection=self.stl_linear_deflection, + angular_deflection=self.stl_angular_deflection, + ) + + write_step_file(a_shape=self.shape, filename=str(out_step)) + + # save print path points + dict = {"x": np.array(self.points)[:, 0], "y": np.array(self.points)[:, 1]} + df = pd.DataFrame(dict) + df.to_csv(str(out_path), index=False)
+
+ + + +
+[docs] +class GeometryParamWall(GeometryOCC): + def __init__( + self, + height: float | None = None, + length: float | None = None, + width: float | None = None, + line_width: float | None = None, + radius: float | None = None, + infill: typing.Literal["solid", "honeycomb", "zigzag"] | None = None, + infill_num: int = 1, + layer_thickness: float | None = None, + **kwargs, + ) -> None: + """OCC geometry class for parametric wall element with following parameters: + + Args: + height: Height of wall. + length: Length of wall. + width: Width of wall. + radius: Radius of wall curvature. + infill: Infill of wall: possible solid, honeycomb, zigzag. + layer_thickness: Thickness of the layers. + + """ + + self.height = height + self.length = length + self.width = width + self.radius = radius + self.infill = infill + self.line_width = line_width + self.layer_thickness = layer_thickness + self.infill_num = infill_num + + super().__init__(**kwargs) + +
+[docs] + def geometry_spawn(self) -> TopoDS_Shape: + """Define wall geometry based on given parameters. + + Args: + + Returns: + shape: OCC shape. + + """ + + assert self.height is not None + assert self.length is not None + assert self.width is not None + # assert self.radius is not None + assert self.infill is not None + # assert self.layer_thickness is not None + + if self.infill == "solid": + shape = occ_helpers.create_box( + length=self.length, + width=self.width, + height=self.height, + radius=self.radius, + ) + points = [[0, 0, 0], [0, 0, 0]] + + elif self.infill == "no": + W = self.width + L = self.length + t = self.line_width + points = [ + [0.0, 0.0, 0.0], + [0.0, (W - t) / 2, 0.0], + [(L - t), (W - t) / 2, 0.0], + [(L - t), -(W - t) / 2, 0.0], + [0.0, -(W - t) / 2, 0.0], + ] + + creator = builtincad.CreateWallByPoints( + points, th=self.line_width, height=self.height + ) + shape = creator.Shape() + creator.visualize() + + elif self.infill == "honeycomb": + points = self.honeycomb_infill( + self.length, self.width, self.line_width, self.infill_num + ) + creator = builtincad.CreateWallByPoints( + points, th=self.line_width, height=self.height + ) + shape = creator.Shape() + elif self.infill == "zigzag": + points = self.zigzag_infill( + self.length, self.width, self.line_width, self.infill_num + ) + creator = builtincad.CreateWallByPoints( + points, th=self.line_width, height=self.height + ) + shape = creator.Shape() + else: + raise ValueError(f"Unknown infill type {self.infill}") + + return shape, points
+ + +
+[docs] + def honeycomb_infill( + self, + overall_length: float, + overall_width: float, + line_width: float, + honeycomb_num: int = 1, + angle: float = 1.1468, + regular: bool = False, + side_len: float = None, + expand_factor: float = 0, + ): + """ + Create honeycomb geometry. + + Args: + overall_length: Length of the honeycomb infill. + overall_width: Width of the honeycomb infill. + line_width: Width of the honeycomb lines. + honeycomb_num: Number of honeycomb units. + angle: Angle of the honeycomb lines. + regular: Regular honeycomb or not. A regular honeycomb has a fixed side length. + side_len: Side length of the honeycomb. + expand_factor: Factor to expand the honeycomb geometry. + + + Returns: + np.ndarray: Array of points defining the honeycomb geometry. + """ + + def calculate_lengths_and_widths(angle_length_pair): + x_rad = np.radians(angle_length_pair[0]) + equation1 = ( + (2 * np.cos(x_rad) + 2) * angle_length_pair[1] * honeycomb_num + + 1.5 * line_width + - overall_length + ) + equation2 = ( + 3 * line_width + + 2 * angle_length_pair[1] * np.sin(x_rad) + - overall_width + ) + return [equation1, equation2] + + def create_half_honeycomb(origin, side_length1, side_length2, angle): + points = np.zeros((5, 2)) + points[0] = origin + points[1] = origin + np.array( + [side_length1 * np.cos(angle), side_length1 * np.sin(angle)] + ) + points[2] = points[1] + np.array([side_length2, 0]) + points[3] = points[2] + np.array( + [side_length1 * np.cos(angle), -side_length1 * np.sin(angle)] + ) + points[4] = points[3] + np.array([side_length2 * 0.5, 0]) + return points + + if not regular: + if overall_width is not None: + overall_length -= int(line_width) + overall_width -= int(line_width) + initial_guesses = [ + (x, y) + for x in range(0, 89, 10) + for y in range(1, overall_length, 10) + ] + updated_solutions = { + (round(sol[0], 10), round(sol[1], 10)) + for guess in initial_guesses + for sol in [fsolve(calculate_lengths_and_widths, guess)] + if 0 <= sol[0] <= 90 and 0 <= sol[1] <= 150 + } + if updated_solutions: + ideal_solution = min( + updated_solutions, key=lambda x: np.abs(x[0] - 45) + ) + else: + raise ValueError("No solution found") + length = ideal_solution[1] + angle = np.radians(ideal_solution[0]) + else: + length = ( + (overall_length - 1.5 * line_width) + / (2 * np.cos(angle) + 2) + / honeycomb_num + ) + overall_width = 3 * line_width + 2 * np.sin(angle) * length + else: + length = side_len + overall_length = ( + 1.5 * line_width + (2 * np.cos(angle) + 2) * side_len * honeycomb_num + ) + overall_width = 3 * line_width + 2 * np.sin(angle) * length + + start_point = np.array([0, line_width * 0.5]) + offset = np.array([line_width * 0.5 + length * 0.5, 0]) + + half_points = np.zeros((int((12 + (honeycomb_num - 1) * 10) / 2), 2)) + half_points[0] = start_point + for i in range(honeycomb_num): + start = ( + start_point + + offset + + np.array([(2 * np.cos(angle) + 2) * length * i, 0]) + ) + honeycomb_unit = create_half_honeycomb(start, length, length, angle) + half_points[i * 5 + 1 : i * 5 + 6] = honeycomb_unit + + another_half = np.flipud(np.copy(half_points) * [1, -1]) + points = np.concatenate((half_points, another_half), axis=0) + outer_points = np.array( + [ + [0, -overall_width * 0.5], + [overall_length, -overall_width * 0.5], + [overall_length, overall_width * 0.5], + [0, overall_width * 0.5], + ] + ) + points = np.concatenate((points, outer_points), axis=0) + if expand_factor != 0: + cnt = np.mean(points, axis=0) + points[2:-6] = (points[2:-6] - cnt) * (1 + expand_factor) + cnt + return points
+ + +
+[docs] + def zigzag_infill( + self, + overall_length: float, + overall_width: float, + line_width: float, + zigzag_num: int = 1, + angle: float = 1.1468, + regular: bool = False, + side_len: float = None, + expand_factor: float = 0, + ): + """ + Create zigzag geometry. + + Args: + overall_length: Length of the zigzag infill. + overall_width: Width of the zigzag infill. + line_width: Width of the zigzag lines. + zigzag_num: Number of zigzag units. + angle: Angle of the zigzag lines. + regular: Regular zigzag or not. A regular zigzag is equivalent to a diamond. + side_len: Side length of the zigzag. + expand_factor: Factor to expand the zigzag geometry. + + Returns: + np.ndarray: Array of points defining the zigzag geometry. + """ + + def calculate_lengths_and_widths(angle_length_pair): + x_rad = np.radians(angle_length_pair[0]) + eq1 = ( + ( + (2 * np.cos(x_rad)) * angle_length_pair[1] + + line_width * np.sin(x_rad) * 2 + ) + * zigzag_num + + 2 * line_width + - overall_length + ) + eq2 = ( + 3 * line_width + + 2 * angle_length_pair[1] * np.sin(x_rad) + - overall_width + ) + return [eq1, eq2] + + def create_half_zigzag(origin, side_length1, side_length2, angle): + points = np.zeros((5, 2)) + points[0] = origin + points[1] = origin + np.array( + [side_length1 * np.cos(angle), side_length1 * np.sin(angle)] + ) + points[2] = points[1] + np.array([side_length2, 0]) + points[3] = points[2] + np.array( + [side_length1 * np.cos(angle), -side_length1 * np.sin(angle)] + ) + points[4] = points[3] + np.array([side_length2 * 0.5, 0]) + return points + + if not regular: + if overall_width is not None: + overall_length -= line_width + overall_width -= line_width + initial_guesses = [ + (x, y) + for x in range(0, 89, 10) + for y in range(1, int(overall_length), 10) + ] + updated_solutions = { + (round(sol[0], 16), round(sol[1], 16)) + for guess in initial_guesses + for sol in [fsolve(calculate_lengths_and_widths, guess)] + if 0 <= sol[0] <= 90 and 0 <= sol[1] <= 150 + } + if updated_solutions: + ideal_solution = min( + updated_solutions, key=lambda x: np.abs(x[0] - 45) + ) + else: + raise ValueError("No solution found") + length = ideal_solution[1] + angle = np.radians(ideal_solution[0]) + else: + length = ( + overall_length - 1.5 * line_width + ) / zigzag_num - 2 * line_width * np.sin(angle) / (2 * np.cos(angle)) + overall_width = 3 * line_width + 2 * np.sin(angle) * length + else: + length = side_len + overall_length = ( + 1.5 * line_width + (2 * np.cos(angle) + 2) * side_len * zigzag_num + ) + overall_width = 3 * line_width + 2 * np.sin(angle) * length + + start_point = np.array([0, line_width * 0.5]) + offset = np.array([line_width * 1 + line_width * np.sin(angle) * 0.5, 0]) + + point_num = 12 + (zigzag_num - 1) * 10 + half_points = np.zeros((int(point_num / 2), 2)) + half_points[0] = start_point + for i in range(zigzag_num): + start = ( + start_point + + offset + + np.array( + [ + (2 * np.cos(angle) * length + 2 * line_width * np.sin(angle)) + * i, + 0, + ] + ) + ) + zigzag_unit = create_half_zigzag( + start, length, line_width * np.sin(angle), angle + ) + half_points[i * 5 + 1 : i * 5 + 6] = zigzag_unit + + another_half = np.flipud(np.copy(half_points) * [1, -1]) + points = np.concatenate((half_points, another_half), axis=0) + outer_points = np.array( + [ + [0, -overall_width * 0.5], + [overall_length, -overall_width * 0.5], + [overall_length, overall_width * 0.5], + [0, overall_width * 0.5], + ] + ) + points = np.concatenate((points, outer_points), axis=0) + if expand_factor != 0: + cnt = np.mean(points, axis=0) + points[2:-6] = (points[2:-6] - cnt) * (1 + expand_factor) + cnt + + return points
+
+ + + +
+[docs] +class GeometryCenterline(GeometryOCC): + def __init__( + self, + points: np.ndarray | None = None, + layer_thickness: float | None = None, + height: float | None = None, + is_close: bool = True, + **kwargs, + ) -> None: + """OCC geometry class for creating a layer by layer geometry from a given array of centerline points (x,y,z) + and following paramters: + + Args: + points: Array with the centerline points with shape (n_points, 3). + layer_thickness: Thickness of the layers. + height: Height of total structure (number of layer x layer height). + + + """ + self.points = points + self.layer_thickness = layer_thickness + self.height = height + self.is_close = is_close + + super().__init__(**kwargs) + +
+[docs] + def geometry_spawn(self) -> TopoDS_Shape: + """Define geometry from centerline points + Returns: + + """ + assert self.points is not None + assert self.layer_thickness is not None + assert self.height is not None + + creator = builtincad.CreateWallByPoints( + self.points, + th=self.layer_thickness, + height=self.height, + is_close=self.is_close, + ) + shape = creator.Shape() + return shape, self.points
+
+ +
+ +
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+ +
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+ + + + \ No newline at end of file diff --git a/_modules/amworkflow/meshing/meshing.html b/_modules/amworkflow/meshing/meshing.html new file mode 100644 index 0000000..939b0bb --- /dev/null +++ b/_modules/amworkflow/meshing/meshing.html @@ -0,0 +1,277 @@ + + + + + + amworkflow.meshing.meshing — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +

Source code for amworkflow.meshing.meshing

+import logging
+import multiprocessing
+import typing
+from pathlib import Path
+
+import gmsh
+import meshio
+from dolfinx.io import XDMFFile, gmshio
+from mpi4py import MPI
+from OCC.Core.TopoDS import TopoDS_Solid
+from OCC.Extend.DataExchange import read_step_file
+
+from amworkflow import occ_helpers
+
+typing.override = lambda x: x
+
+from amworkflow.config.settings import LOG_LEVEL
+
+# logging.basicConfig(
+#     level=logging.INFO, format="%(asctime)s - %(name)s - %(levelname)s - %(message)s"
+# )
+# logger = logging.getLogger("amworkflow.meshing.meshing")
+# logger.setLevel(LOG_LEVEL)
+
+
+
+[docs] +class Meshing: + """Base class with API for any meshing.""" + + def __init__(self, *args, **kwargs) -> None: + self.logger = logging.getLogger(__name__ + "." + self.__class__.__name__) + +
+[docs] + @typing.override + def create( + self, step_file: Path, out_xdmf: Path, out_vtk: Path | None = None + ) -> None: + """Create mesh xdmf file and possibly vtk file from input step file. + + Args: + step_file: File path to input geometry step file. + out_xdmf: File path of output xdmf file (maybe others if other mesh engine). + out_vtk: Optional file path of output vtk file. + + Returns: + + """ + raise NotImplementedError
+
+ + + +
+[docs] +class MeshingGmsh(Meshing): + + def __init__( + self, + mesh_size_factor: float = 0.1, + layer_height: float | None = None, + number_of_layers: float | None = None, + **kwargs, + ) -> None: + """Meshing class using gmsh. + + Args: + mesh_size_factor: Factor for mesh size (default 0.1). + layer_height: Height of each layer (default None). + number_of_layers: Number of layers (default None). + """ + self.mesh_size_factor = mesh_size_factor + self.layer_height = layer_height + self.number_of_layers = number_of_layers + super().__init__(**kwargs) + +
+[docs] + def create( + self, step_file: Path, out_xdmf: Path, out_vtk: Path | None = None + ) -> None: + """Create mesh xdmf file and possibly vtk file from input step file. + + Args: + step_file: File path to input geometry step file. + out_xdmf: File path of output xdmf file. + out_vtk: Optional file path of output vtk file. + + Returns: + + """ + if self.layer_height is None and self.number_of_layers is None: + raise ValueError("Both layer_height and number_of_layers are None.") + assert step_file.is_file(), f"Step file {step_file} does not exist." + + shape = read_step_file(filename=str(step_file)) + solid = occ_helpers.create_solid(shape) + + assert isinstance(solid, TopoDS_Solid), "Must be TopoDS_Shape object to mesh." + + gmsh.initialize() + + try: + gmsh.is_initialized() + except: + raise EnvironmentError("Gmsh not initialized.") + + # two options of splitting geometry in layers checked above in assert + geo = occ_helpers.split_by_plane( + item=shape, layer_height=self.layer_height, nz=self.number_of_layers + ) + + model = gmsh.model() + gmsh.option.setNumber("General.Verbosity", 0) + threads_count = multiprocessing.cpu_count() + # gmsh.option.setNumber("General.NumThreads", threads_count) # FIX: Conflict with doit. Will looking for solutions. + # model.add("model name") # TODO: required? Not necessarily but perhaps for output .msh + layers = model.occ.importShapesNativePointer(int(geo.this), highestDimOnly=True) + model.occ.synchronize() + for layer in layers: + model.add_physical_group(3, [layer[1]], name=f"layer{layer[1]}") + # phy_gp = model.getPhysicalGroups() + gmsh.option.setNumber("Mesh.MeshSizeFactor", self.mesh_size_factor) + model.mesh.generate() + model.mesh.remove_duplicate_nodes() + model.mesh.remove_duplicate_elements() + phy_gp = model.getPhysicalGroups() + model_name = model.get_current() + + # # save + # msh, cell_markers, facet_markers = gmshio.model_to_mesh(model, MPI.COMM_SELF, 0) + # msh.name = model_name + # cell_markers.name = f"{msh.name}_cells" + # facet_markers.name = f"{msh.name}_facets" + # with XDMFFile(msh.comm, out_xdmf, "w") as file: + # file.write_mesh(msh) + # file.write_meshtags(cell_markers) + # msh.topology.create_connectivity(msh.topology.dim - 1, msh.topology.dim) + # file.write_meshtags(facet_markers) + + # workaround for since gmshio.model_to_mesh is not working + out_msh = out_xdmf.with_suffix(".msh") + gmsh.write(str(out_msh)) + msh = meshio.read(out_msh) + mesh = self.create_mesh(msh, "tetra") + meshio.write(out_xdmf, mesh) + + if out_vtk: + gmsh.write(str(out_vtk))
+ + +
+[docs] + def create_mesh(self, mesh, cell_type: str, prune_z: bool = False) -> meshio.Mesh: + """Convert meshio mesh to fenics compatible mesh. + based on https://jsdokken.com/dolfinx-tutorial/chapter3/subdomains.html?highlight=read_mesh + + Args: + mesh: Mesh read by meshio from msh file (meshio.read(file_msh)). + cell_type: Type of cell to be meshed (e.g. 'tetra','triangle' ...). + prune_z: True for 2D meshes - removes z coordinate. + + Returns: + out_mesh: Mesh which can be saved as xdmf file. (meshio.write(file_xdmf, out_mesh)) + """ + cells = mesh.get_cells_type(cell_type) + cell_data = mesh.get_cell_data("gmsh:physical", cell_type) + points = mesh.points[:, :2] if prune_z else mesh.points + out_mesh = meshio.Mesh( + points=points, + cells={cell_type: cells}, + cell_data={"name_to_read": [cell_data]}, + ) + return out_mesh
+
+ +
+ +
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+ +
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+ + + + \ No newline at end of file diff --git a/_modules/amworkflow/simulation/experiment.html b/_modules/amworkflow/simulation/experiment.html new file mode 100644 index 0000000..cea4b54 --- /dev/null +++ b/_modules/amworkflow/simulation/experiment.html @@ -0,0 +1,680 @@ + + + + + + amworkflow.simulation.experiment — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
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+ +

Source code for amworkflow.simulation.experiment

+import dolfinx as df
+import numpy as np
+import pint
+import ufl
+from dolfinx.io import XDMFFile
+from fenicsxconcrete.boundary_conditions.bcs import BoundaryConditions
+from fenicsxconcrete.boundary_conditions.boundary import (
+    plane_at,
+    line_at,
+    point_at,
+    within_range,
+)
+from fenicsxconcrete.experimental_setup.base_experiment import Experiment
+from fenicsxconcrete.util import Parameters, QuadratureRule, ureg
+from mpi4py import MPI
+from petsc4py.PETSc import ScalarType
+
+"""As base class for experiments the Experiment class of FenicsXConcrete is used.
+    Attention pint parameters are required!"""
+
+
+
+[docs] +class ExperimentProcess(Experiment): + """Experiment class for AM process simulations. + + geometry by external mesh file + boundary conditions: fixed on bottom (z==0), am body force in z directory + """ + + def __init__(self, parameters: dict[str, pint.Quantity] | None = None) -> None: + """initializes the object, for the rest, see base class + + Standard parameters are set + setup function called + + Args: + parameters: dictionary with parameters that can override the default values. Needs to be pint quantities!! description is given in parameter_description() + + """ + + # initialize a set of default parameters + p = Parameters() + + p.update(parameters) + + super().__init__(p) + +
+[docs] + def setup(self) -> None: + """Generates the mesh by loading the mesh file given in parameter""" + + if self.p["dim"] == 3: + # load mesh file + with XDMFFile(MPI.COMM_WORLD, self.p["mesh_file"], "r") as xdmf: + domain = xdmf.read_mesh(name="Grid") + # change to base units + nodes = domain.geometry.x[:] * ureg(self.p["mesh_unit"]) + domain.geometry.x[:] = nodes.to_base_units().magnitude + self.mesh = domain + + else: + raise ValueError( + f"wrong dimension: {self.p['dim']} is not implemented for problem setup" + )
+ + +
+[docs] + @staticmethod + def parameter_description() -> dict[str, str]: + """description of the required parameters for the experiment """ + + description = { + "dim": "dimension of problem, only 3D implemented", + "mesh_file": "path name of the mesh file in xdmf format (h5 with same name required)", + "mesh_unit": "unit of the mesh file for recomputing into base units", + } + + return description
+ + +
+[docs] + @staticmethod + def default_parameters() -> dict[str, pint.Quantity]: + """sets up a working set of parameter values as example + + Returns: + dictionary with a working set of the required parameter + """ + + default_parameters = {} + + # mesh information + # dimension of problem, only 3D implemented + default_parameters["dim"] = 3 * ureg("") + # path name of the mesh file in xdmf format + default_parameters["mesh_file"] = "bla/test_files.xdmf" * ureg("") + # unit of the mesh file + default_parameters["mesh_unit"] = "mm" * ureg("") + + return default_parameters
+ + +
+[docs] + def create_displacement_boundary( + self, V: df.fem.FunctionSpace + ) -> list[df.fem.bcs.DirichletBCMetaClass]: + """defines displacement boundary as fixed at bottom + + Args: + V: function space + + Returns: + list of dirichlet boundary conditions + + """ + + bc_generator = BoundaryConditions(self.mesh, V) + + # find boundary at bottom + mesh_points = self.mesh.geometry.x + min_z = mesh_points[:, 2].min() + print("fix at z=", min_z) + + if self.p["dim"] == 3: + # fix dofs at bottom + bc_generator.add_dirichlet_bc( + np.array([0.0, 0.0, 0.0], dtype=ScalarType), + boundary=plane_at(min_z, 2), + method="geometrical", + entity_dim=self.mesh.topology.dim - 1, # surface + ) + else: + raise ValueError( + f"wrong dimension: {self.p['dim']} is not implemented for problem setup" + ) + + return bc_generator.bcs
+ + + def get_bottom_area(self) -> float: + fdim = self.mesh.topology.dim - 1 + bottom_facets = df.mesh.locate_entities(self.mesh, fdim, self.boundary_bottom()) + marked_facets = np.hstack([bottom_facets]) + marked_values = np.hstack([np.full_like(bottom_facets, 1)]) + sorted_facets = np.argsort(marked_facets) + facet_tag = df.mesh.meshtags( + self.mesh, fdim, marked_facets[sorted_facets], marked_values[sorted_facets] + ) + + ds = ufl.Measure( + "ds", + domain=self.mesh, + subdomain_data=facet_tag, + metadata={"quadrature_degree": 2}, + ) + + # not required - can be done by gcode! + area = df.fem.assemble_scalar(df.fem.form(1.0 * ds(1))) + + return area + +
+[docs] + def create_body_force_am( + self, v: ufl.argument.Argument, q_fd: df.fem.Function, rule: QuadratureRule + ) -> ufl.form.Form: + """defines body force for am experiments + + element activation via pseudo density and incremental loading via parameter ["load_time"] computed in class concrete_am + + Args: + v: test_files function + q_fd: quadrature function given the loading increment where elements are active + rule: rule for the quadrature function + + Returns: + form for body force + + """ + print("in force") + force_vector = np.zeros(self.p["dim"]) + force_vector[-1] = -self.p["rho"] * self.p["g"] # works for 2D and 3D + print(force_vector) + + f = df.fem.Constant(self.mesh, ScalarType(force_vector)) + L = q_fd * ufl.dot(f, v) * rule.dx + + return L
+ + +
+[docs] + def compute_volume(self) -> float: + """Computes the volume of the structure + + Returns: + volume of the structure + + """ + dx = ufl.Measure("dx", domain=self.mesh, metadata={"quadrature_degree": 2}) + volume = df.fem.assemble_scalar(df.fem.form(1.0 * dx)) + + return volume
+
+ + + +
+[docs] +class ExperimentStructure(Experiment): + """Experiment class for AM structure simulation in the end (after printing). + + geometry by external mesh file (z direction == vertical printing direction (layer height)) + boundary conditions from testing controlling via parameter ["bc_setting"] + fixed_y_bottom: y_min surface fixed and displacement load at y_max surface + with or without body force param["rho"] (in y direction) + #TODO: generate sufficient loading cases parameterized! + """ + + def __init__(self, parameters: dict[str, pint.Quantity] | None = None) -> None: + """initializes the object, for the rest, see base class + + Standard parameters are set + setup function called + + Args: + parameters: dictionary with parameters that can override the default values, description is given in parameter_description() + + """ + + # initialize a set of default parameters + p = Parameters() + + p.update(parameters) + + super().__init__(p) + + # initialize variable top_displacement + self.top_displacement = df.fem.Constant( + domain=self.mesh, c=0.0 + ) # applied via fkt: apply_displ_load(...) + +
+[docs] + def setup(self) -> None: + """Generates the mesh loading the mesh file given in parameter""" + + if self.p["dim"] == 3: + # load mesh file + with XDMFFile(MPI.COMM_WORLD, self.p["mesh_file"], "r") as xdmf: + domain = xdmf.read_mesh(name="Grid") + # change to base units + nodes = domain.geometry.x[:] * ureg(self.p["mesh_unit"]) + domain.geometry.x[:] = nodes.to_base_units().magnitude + self.mesh = domain + else: + raise ValueError( + f"wrong dimension: {self.p['dim']} is not implemented for problem setup" + )
+ + +
+[docs] + @staticmethod + def parameter_description() -> dict[str, str]: + """description of the required parameters for the experiment """ + + description = { + "bc_setting": "boundary setting, possible cases <fixed_y_bottom> fixed at ymin values loaded per displacement load at ymax values", + "dim": "dimension of problem, only 3D implemented", + "mesh_file": "path name of the mesh file in xdmf format (h5 with same name required)", + "mesh_unit": "unit of the mesh file for recomputing into base units", + } + + return description
+ + +
+[docs] + @staticmethod + def default_parameters() -> dict[str, pint.Quantity]: + """sets up a working set of parameter values as example + + Returns: + dictionary with a working set of the required parameter + """ + + default_parameters = {} + + # boundary setting + default_parameters["bc_setting"] = "fixed" * ureg("") # boundary setting + # mesh information + # dimension of problem, only 3D implemented + default_parameters["dim"] = 3 * ureg("") + # path name of the mesh file in xdmf format + default_parameters["mesh_file"] = "bla/test_files.xdmf" * ureg("") + # unit of the mesh file + default_parameters["mesh_unit"] = "mm" * ureg("") + + return default_parameters
+ + +
+[docs] + def create_displacement_boundary( + self, V: df.fem.FunctionSpace + ) -> list[df.fem.bcs.DirichletBCMetaClass]: + """Defines the displacement boundary conditions + + Args: + V: Function space of the structure + + Returns: + list of DirichletBC objects, defining the boundary conditions + + """ + + # define boundary conditions generator + bc_generator = BoundaryConditions(self.mesh, V) + + # Attention: + # normally geometries are defined as x/y and z in height due to AM production z is the direction perpendicular to the layers with is not usually the loading direction + # for each defined case please also define the bottom boundary for the reaction force sensor + # get mesh_points to define boundaries + mesh_points = self.mesh.geometry.x + if self.p["dim"] == 3: + self.min_x = mesh_points[:, 0].min() + self.max_x = mesh_points[:, 0].max() + self.min_y = mesh_points[:, 1].min() + self.max_y = mesh_points[:, 1].max() + self.min_z = mesh_points[:, 2].min() + self.max_z = mesh_points[:, 2].max() + else: + raise ValueError(f"wrong dimension: {self.p['dim']} is not implemented for problem setup") + + + if self.p["bc_setting"] == "fixed_y": + # loading displacement controlled in y direction at max_y surface, whereas y-z surface at min_y is full fixed + if self.p["dim"] == 3: + self.logger.info("fix at y= %s", self.min_y) + self.logger.debug("check points at y_min %s", mesh_points[mesh_points[:, 1] == self.min_y]) + # dofs at bottom y_min fixed in x, y and z direction + bc_generator.add_dirichlet_bc( + np.array([0.0, 0.0, 0.0], dtype=ScalarType), + boundary=plane_at(self.min_y, 'y'), + method="geometrical", + entity_dim=self.mesh.topology.dim - 1, # surface + ) + # top displacement at top (==max_y) in y direction + # look for max y values in mesh + self.logger.info("apply disp where y= %s", self.max_y) + self.logger.debug("check points at max_y: %s", mesh_points[mesh_points[:, 1] == self.max_y]) + bc_generator.add_dirichlet_bc( + self.top_displacement, + boundary=plane_at(self.max_y, 'y'), + sub=1, + method="geometrical", + entity_dim=self.mesh.topology.dim - 1, + ) + + elif self.p["bc_setting"] == "compr_disp_y": + # loading displacement controlled in y direction at max_y surface, whereas y-z surface at min_y is sligthly fixed + if self.p["dim"] == 3: + self.logger.info("fix at y= %s", self.min_y) + self.logger.debug("check points at y_min %s", mesh_points[mesh_points[:, 1] == self.min_y]) + # fixed bottom in y + bc_generator.add_dirichlet_bc( + df.fem.Constant( + domain=self.mesh, c=0.0 + ), + boundary=plane_at(self.min_y, 'y'), + sub=1, + method="geometrical", + entity_dim=self.mesh.topology.dim - 1, # surface + ) + # one point in all dirc and one in z direction fixed + print('bc points: ', self.min_x, self.min_y, self.min_z, 'and', self.max_x, self.min_y, self.min_z) + bc_generator.add_dirichlet_bc( + np.array([0.0, 0.0, 0.0], dtype=ScalarType), + boundary=point_at([self.min_x, self.min_y, self.min_z]), + method="geometrical", + entity_dim=0, # point + ) + bc_generator.add_dirichlet_bc( + df.fem.Constant( + domain=self.mesh, c=0.0 + ), + boundary=point_at([self.max_x, self.min_y, self.min_z]), + sub=2, + method="geometrical", + entity_dim=0, # point + ) + + # top displacement at top (==max_y) in y direction + # look for max y values in mesh + self.logger.info("apply disp where y= %s", self.max_y) + self.logger.debug("check points at max_y: %s", mesh_points[mesh_points[:, 1] == self.max_y]) + bc_generator.add_dirichlet_bc( + self.top_displacement, + boundary=plane_at(self.max_y, 'y'), + sub=1, + method="geometrical", + entity_dim=self.mesh.topology.dim - 1, + ) + + # define displacement sensor position for this set-up + self.sensor_location_corner_top = [self.min_x, self.max_y, self.min_z] # corner point + self.sensor_location_middle_endge = [self.min_x, (self.max_y-self.min_y)/2., self.min_z] # point in the middle of the one edge + + + elif self.p["bc_setting"] == "compr_disp_x": + # loading displacement controlled in x direction at max_x surface, whereas x-z surface at min_x is sligthly fixed + if self.p["dim"] == 3: + self.logger.info("fix at x=%s", self.min_x) + self.logger.debug("check points at x_min %s", mesh_points[mesh_points[:, 0] == self.min_x]) + # fixed in x + bc_generator.add_dirichlet_bc( + df.fem.Constant( + domain=self.mesh, c=0.0 + ), + boundary=plane_at(self.min_x, 'x'), + sub=0, + method="geometrical", + entity_dim=self.mesh.topology.dim - 1, # surface + ) + # + print('bc points: ', self.min_x, self.min_y, self.min_z, 'and', self.min_x, self.max_y, self.min_z) + bc_generator.add_dirichlet_bc( + np.array([0.0, 0.0, 0.0], dtype=ScalarType), + boundary=point_at([self.min_x, self.min_y, self.min_z]), + method="geometrical", + entity_dim=0, # point + ) + bc_generator.add_dirichlet_bc( + df.fem.Constant( + domain=self.mesh, c=0.0 + ), + boundary=point_at([self.min_x, self.max_y, self.min_z]), + sub=2, + method="geometrical", + entity_dim=0, # point + ) + + # top displacement at top (==max_x) in x direction + self.logger.info("apply disp where x=%s", self.max_x) + self.logger.debug("check points at max_x: %s", mesh_points[mesh_points[:, 0] == self.max_x]) + bc_generator.add_dirichlet_bc( + self.top_displacement, + boundary=plane_at(self.max_x, 'x'), + sub=0, + method="geometrical", + entity_dim=self.mesh.topology.dim - 1, + ) + # define displacement sensor position for this set-up + self.sensor_location_corner_top = [self.max_x, self.min_y, self.min_z] # corner point + self.sensor_location_middle_endge = [(self.max_x-self.min_x)/2, self.min_y, self.min_z] # point in the middle of the one edge + + elif self.p["bc_setting"] == 'fixed_truss': + # truss structure with right and left support part + if self.p["dim"] == 3: + # get mesh_points to define boundaries + mesh_points = self.mesh.geometry.x + min_y = mesh_points[:, 1].min() + print('fix at y=', min_y) + print('check points at y_min', mesh_points[mesh_points[:, 1] == min_y]) + # dofs at bottom y_min fixed in x, y and z direction + bc_generator.add_dirichlet_bc( + np.array([0.0, 0.0, 0.0], dtype=ScalarType), + boundary=plane_at(min_y, 1), + method="geometrical", + entity_dim=self.mesh.topology.dim - 1, # surface + ) + # dofs at left side (x_min) fixed in x + min_x = mesh_points[:, 0].min() + print('fix at x=', min_x) + # print('check points at x_min', mesh_points[mesh_points[:, 0] == min_x]) + bc_generator.add_dirichlet_bc(np.float64(0.0), boundary=plane_at(min_x, 0), sub=0, + method="geometrical", entity_dim=self.mesh.topology.dim - 1) + + # dofs at right side max x values fixed in y + # look for max x values in mesh + max_x = mesh_points[:, 0].max() + print('fix at x=', max_x) + print('check points at max_x', mesh_points[mesh_points[:, 0] == max_x]) + bc_generator.add_dirichlet_bc(np.float64(0.0), boundary=plane_at(max_x, 0), sub=0, + method="geometrical", entity_dim=self.mesh.topology.dim - 1) + + # # displacement not working here + # # top displacement at top (==max_y) in y direction + # # look for max y values in mesh + # max_y = mesh_points[:, 1].max() + # print('apply disp where', max_y) + # print('check points at may_y', mesh_points[mesh_points[:, 1] == max_y]) + # bc_generator.add_dirichlet_bc(self.top_displacement, boundary=plane_at(max_y, 1), sub=1, + # method="geometrical", entity_dim=self.mesh.topology.dim - 1) + + else: + raise ValueError(f"Wrong boundary setting: {self.p['bc_setting']}") + + return bc_generator.bcs
+ + +
+[docs] + def apply_displ_load(self, top_displacement: pint.Quantity | float) -> None: + """Updates the applied displacement load + + Args: + top_displacement: Displacement of the top boundary in mm + + """ + top_displacement.ito_base_units() + self.top_displacement.value = top_displacement.magnitude
+ + +
+[docs] + def boundary_bottom(self): + """specifies boundary: plane at bottom because different for different bc_setting + + Returns: fct defining if dof is at boundary + + """ + if self.p["bc_setting"] == "compr_disp_y" or self.p["bc_setting"] == "fixed_y" or self.p["bc_setting"] == "fixed_truss": + if self.p["dim"] == 3: + return plane_at(self.min_y, "y") + + elif self.p["bc_setting"] == "compr_disp_x": + if self.p["dim"] == 3: + return plane_at(self.min_x, "x") + + else: + raise ValueError(f"Wrong boundary setting: {self.p['bc_setting']}")
+ + +
+[docs] + def compute_volume(self) -> float: + """Computes the volume of the structure + + Returns: + volume of the structure + + """ + dx = ufl.Measure("dx", domain=self.mesh, metadata={"quadrature_degree": 2}) + volume = df.fem.assemble_scalar(df.fem.form(1.0 * dx)) + + return volume
+ + + +
+[docs] + def create_body_force(self, v: ufl.argument.Argument) -> ufl.form.Form: + """defines body force + + Args: + v: test_files function + + Returns: + form for body force + + """ + + force_vector = np.zeros(self.p["dim"]) + force_vector[1] = ( + -self.p["rho"] * self.p["g"] + ) # for 3D case where y is the height direction!! + + f = df.fem.Constant(self.mesh, ScalarType(force_vector)) + L = ufl.dot(f, v) * ufl.dx + + return L
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+ + + + \ No newline at end of file diff --git a/_modules/amworkflow/simulation/simulation.html b/_modules/amworkflow/simulation/simulation.html new file mode 100644 index 0000000..4232684 --- /dev/null +++ b/_modules/amworkflow/simulation/simulation.html @@ -0,0 +1,409 @@ + + + + + + amworkflow.simulation.simulation — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + +
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Source code for amworkflow.simulation.simulation

+import logging
+import typing
+from pathlib import Path
+
+import dolfinx as df
+import numpy as np
+import pandas as pd
+from fenicsxconcrete.finite_element_problem import ConcreteAM, ConcreteThixElasticModel
+from fenicsxconcrete.finite_element_problem.linear_elasticity import LinearElasticity
+from fenicsxconcrete.sensor_definition.reaction_force_sensor import ReactionForceSensor
+from fenicsxconcrete.sensor_definition.displacement_sensor import DisplacementSensor
+from fenicsxconcrete.sensor_definition.strain_sensor import StrainSensor
+from fenicsxconcrete.sensor_definition.stress_sensor import StressSensor
+from fenicsxconcrete.util import QuadratureEvaluator, ureg
+
+from amworkflow.simulation.experiment import ExperimentProcess, ExperimentStructure
+
+typing.override = lambda x: x
+
+
+
+[docs] +class Simulation: + """Base class with API for any simulation.""" + + def __init__(self, *args, **kwargs) -> None: + self.logger = logging.getLogger(__name__ + "." + self.__class__.__name__) + +
+[docs] + @typing.override + def run(self, mesh_file: Path, out_xdmf: Path) -> None: + """Run simulation and save results in simulation result file (xdmf file). + + Args: + mesh_file: File path to input mesh file. + out_xdmf: File path of output xdmf file. + + Returns: + + """ + raise NotImplementedError
+
+ + + +
+[docs] +class SimulationFenicsXConcrete(Simulation): + + def __init__( + self, + pint_parameters: dict, + **kwargs, + ) -> None: + """Simulation class using FenicsXConcrete. + Args: + pint_parameters: Dictionary with pint parameters according to FencisXConcrete interface. + """ + self.pint_parameters = pint_parameters + super().__init__(**kwargs) + +
+[docs] + def parameter_description(self) -> dict[str, str]: + """description of the required parameters for the simulation""" + + parameter_description = { + "experiment_type": "type of experiment, possible cases: structure or process", + "material_type": "type of material, e.g. linear or thixo", + + "for structure simulation": {"top_displacement": "displacement of top surface",}, + "for process simulation": { + "num_layers": "number of layers", + "layer_height": "height of each layer", + "time_per_layer": "time to build one layer (either this or print_velocity)", + "print_velocity": "print velocity (either this or time_per_layer)", + "num_time_steps_per_layer": "number of time steps per layer",} + } + + if self.pint_parameters["experiment_type"].magnitude == "structure": + parameter_description['ExperimentStructure Parameters'] = ExperimentStructure.parameter_description() + elif self.pint_parameters["experiment_type"].magnitude == "process": + parameter_description['ExperimentProcess Parameters'] = ExperimentProcess.parameter_description() + + # if self.pint_parameters["material_type"].magnitude == "linear": + # parameter_description['Material Parameters'] = LinearElasticity.parameter_description() # not in current FenicsXConcrete version + if self.pint_parameters["material_type"].magnitude == "thixo": + parameter_description['Material Parameters'] = ConcreteAM.parameter_description() + + return parameter_description
+ + + + +
+[docs] + def run(self, mesh_file: Path, out_xdmf: Path) -> None: + """Run simulation and save results in simulation result file (xdmf file). + + Args: + mesh_file: File path to input mesh file. + out_xdmf: File path of output xdmf file. + + Returns: + + """ + self.logger.info('run simulation with FenicsXConcrete') + # add mesh file info to parameter dict + self.pint_parameters["mesh_file"] = f"{mesh_file}" * ureg("") + + if self.pint_parameters["experiment_type"].magnitude == "structure": + + experiment = ExperimentStructure(self.pint_parameters) + print('Volume of design', experiment.compute_volume()) + + if self.pint_parameters["material_type"].magnitude == "linear": + self.problem = LinearElasticity( + experiment, + self.pint_parameters, + pv_name=out_xdmf.stem, + pv_path=out_xdmf.parent, + ) + else: + raise NotImplementedError( + "material type not yet implemented: ", self.material_type + ) + + # set sensors + self.problem.add_sensor(ReactionForceSensor()) + if experiment.p["bc_setting"] == "compr_disp_x" or experiment.p["bc_setting"] == "compr_disp_y": + self.problem.add_sensor(StressSensor(where=experiment.sensor_location_middle_endge, name="stress sensor")) + self.problem.add_sensor(StrainSensor(where=experiment.sensor_location_middle_endge, name="strain sensor")) + self.problem.add_sensor(DisplacementSensor(where=experiment.sensor_location_corner_top, name="disp top")) + + for i in range(0,self.pint_parameters["number_steps"].magnitude): + d_disp = 0 + (i+1) * self.pint_parameters["top_displacement"] / self.pint_parameters["number_steps"].magnitude + print('d_disp', d_disp) + self.problem.experiment.apply_displ_load(d_disp) + self.problem.solve() + self.problem.pv_plot() + print( + f"computed disp step: {i}, u_max={self.problem.fields.displacement.x.array[:].max()}, u_min={self.problem.fields.displacement.x.array[:].min()}" + ) + print( + "force_x_y_z", + np.array(self.problem.sensors["ReactionForceSensor"].data),self.problem.sensors["ReactionForceSensor"].units + ) + + ## temporary solution to get equivalent modulus TO BE DELTED + if self.pint_parameters["bc_setting"].magnitude == "compr_disp_y": + force_y = np.array(self.problem.sensors["ReactionForceSensor"].data)[:, 1].min() + u_max = d_disp + print('equivalent modulus', force_y/(u_max*0.15)*10**(-6)) + elif self.pint_parameters["bc_setting"].magnitude == "compr_disp_x": + force_y = np.array(self.problem.sensors["ReactionForceSensor"].data)[:, 0].min() + u_max = d_disp + print('equivalent modulus', force_y/(u_max*0.15)*10**(-6)) + + # save sensor output as csv file for postprocessing + if experiment.p["bc_setting"] == "compr_disp_x" or experiment.p["bc_setting"] == "compr_disp_y": + sensor_dict = {} + sensor_dict["disp_x"] = np.array(self.problem.sensors["disp top"].data)[:, 0] + sensor_dict["disp_y"] = np.array(self.problem.sensors["disp top"].data)[:, 1] + sensor_dict["disp_z"] = np.array(self.problem.sensors["disp top"].data)[:, 2] + sensor_dict["force_x"] = np.array(self.problem.sensors["ReactionForceSensor"].data)[:, 0] + sensor_dict["force_y"] = np.array(self.problem.sensors["ReactionForceSensor"].data)[:, 1] + sensor_dict["force_z"] = np.array(self.problem.sensors["ReactionForceSensor"].data)[:, 2] + df_sensor = pd.DataFrame(sensor_dict) + print(df_sensor) + df_sensor.to_csv(out_xdmf.parent / f"{out_xdmf.stem}.csv", index=False) + + + elif self.pint_parameters["experiment_type"].magnitude == "process": + experiment = ExperimentProcess(self.pint_parameters) + + # define time to build one layer from printer velocity + # alternative give layer time directly ?? + if "time_per_layer" in self.pint_parameters: + time_layer = self.pint_parameters["time_per_layer"].magnitude + else: + layer_length = ( + experiment.get_bottom_area() / experiment.p["layer_thickness"] + ) + time_layer = ( + layer_length / experiment.p["print_velocity"] + ) # time to build one layer + print("layer length approx by surface", layer_length) + print("time for one layer", time_layer) + + # defining dt and time loading + self.pint_parameters["dt"] = ( + time_layer / self.pint_parameters["num_time_steps_per_layer"] + ) + self.pint_parameters["load_time"] = ( + 1 * self.pint_parameters["dt"] + ) # interval where load is applied linear over time + + if self.pint_parameters["material_type"].magnitude == "thixo": + self.problem = ConcreteAM( + experiment, + self.pint_parameters, + nonlinear_problem=ConcreteThixElasticModel, + pv_name=out_xdmf.stem, + pv_path=out_xdmf.parent, + ) + else: + raise NotImplementedError( + "material type not yet implemented: ", self.material_type + ) + + # initial path function describing layer activation + self.initial_path( + time_layer, + t_0=-(self.pint_parameters["num_layers"].magnitude - 1) * time_layer, + ) + + # set sensors + self.problem.add_sensor(ReactionForceSensor()) + + total_time = self.pint_parameters["num_layers"] * time_layer + while self.problem.time <= total_time.to_base_units().magnitude: + self.problem.solve() + self.problem.pv_plot() + print( + f"computed disp t={self.problem.time}, u_max={self.problem.fields.displacement.x.array[:].max()}, u_min={self.problem.fields.displacement.x.array[:].min()}" + ) + + print( + "force_x", + np.array(self.problem.sensors["ReactionForceSensor"].data)[:, 0], + ) + print( + "force_y", + np.array(self.problem.sensors["ReactionForceSensor"].data)[:, 1], + ) + print( + "force_z", + np.array(self.problem.sensors["ReactionForceSensor"].data)[:, 2], + ) + + else: + raise NotImplementedError( + "requested experiment type not yet implemented: ", + self.pint_parameters["experiment_type"], + )
+ + +
+[docs] + def initial_path(self, time_layer, t_0: float = 0): + """Define and set initial path in problem describing layer activation. + + only over height - one layer by time -> negative time, when elements will be reached + + Args: + time_layer: Time to build one layer. + t_0: Initial time = -end_time last layer + + Returns: + path: Path function. + + """ + + # get parameters from problem class experiment class would also be possible + num_layers = self.problem.p["num_layers"] + layer_height = self.problem.p["layer_height"] + + # init path time array + q_path = self.problem.rule.create_quadrature_array(self.problem.mesh, shape=1) + + # get quadrature coordinates with work around since tabulate_dof_coordinates()[:] not possible for quadrature spaces! + V = df.fem.VectorFunctionSpace( + self.problem.mesh, ("CG", self.problem.p["degree"]) + ) + v_cg = df.fem.Function(V) + v_cg.interpolate(lambda x: (x[0], x[1], x[2])) + positions = QuadratureEvaluator(v_cg, self.problem.mesh, self.problem.rule) + x = positions.evaluate() + dof_map = np.reshape(x.flatten(), [len(q_path), 3]) + print(np.array(dof_map)) + # save dof_map + np.savetxt("dof_map.csv", dof_map, delimiter=",") + + # select layers only by layer height - z coordinate + h_CO = np.array(dof_map)[:, 2] + h_min = np.arange(0, num_layers * layer_height, layer_height) + h_max = np.arange( + layer_height, + (num_layers + 1) * layer_height, + layer_height, + ) + print("h_CO", h_CO) + print("h_min", h_min) + print("h_max", h_max) + new_path = np.zeros_like(q_path) + EPS = 1e-8 + for i in range(0, len(h_min)): + layer_index = np.where((h_CO > h_min[i] - EPS) & (h_CO <= h_max[i] + EPS)) + new_path[layer_index] = t_0 + (num_layers - 1 - i) * time_layer + + q_path = new_path + + # set new path + self.problem.set_initial_path(q_path) + + return
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+ + + + \ No newline at end of file diff --git a/_modules/index.html b/_modules/index.html new file mode 100644 index 0000000..fb25981 --- /dev/null +++ b/_modules/index.html @@ -0,0 +1,105 @@ + + + + + + Overview: module code — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + +
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+
+ + + + \ No newline at end of file diff --git a/_sources/index.md.txt b/_sources/index.md.txt new file mode 100644 index 0000000..c38f2fa --- /dev/null +++ b/_sources/index.md.txt @@ -0,0 +1,99 @@ +# AMworkflow + +## Dev on Documentation ++ Prerequisite: ```Sphinx```, ```sphinx-autobuild```, ```sphinx-rtd-theme```, ```sphinxcontrib-applehelp```, ```sphinxcontrib-devhelp```, ```sphinxcontrib-htmlhelp```, ```sphinxcontrib-jquery```, ```sphinxcontrib-jsmath```, ```sphinxcontrib-qthelp```, ```sphinxcontrib-serializinghtml```. ++ How does it work? +Use the command: + +```sphinx-autobuild . _build/html``` + +The server should be ready on Localhost Port 8000 and it auto builds when changes made. + + +## Introduction +Some Intro + +## Project Organization +```bash +. +├── config +│ └── settings.py +├── dependencies +│ └── OCCUtils-0.1.dev0-py3-none-any.whl +├── gcode +│ ├── config +│ │ ├── ConcretePrinter.yaml +│ │ ├── ConcretePrinter_BAM.yaml +│ │ ├── PowderBedBAM.yaml +│ │ ├── RS-274D_config.ini +│ │ └── RepRap.yaml +│ ├── gcode.py +│ └── printer_config.py +├── geometry +│ ├── builtinCAD.py +│ └── geometry.py +├── meshing +│ └── meshing.py +├── occ_helpers.py +└── simulation + ├── experiment.py + ├── simulation.py + └── tests +``` + +## BuiltinCAD + +* **Shortest_distance_point_line** +![Small dist line point](pics/Pasted-Graphic.png) +The function returns the shortest distance between a point and a line (segment). For example in figure above the result will be $(\frac{L_1}{L_1+L_2},d_{min})$. + +```{eval-rst} +.. autofunction:: amworkflow.geometry.builtinCAD.shortest_distance_point_line +``` + + + + + + +```{eval-rst} +.. automodule:: amworkflow.geometry.builtinCAD + :members: + :exclude-members: CreateWallByPoints, shortest_distance_point_line +``` + +## Gcode +```{eval-rst} +.. automodule:: amworkflow.gcode.gcode + :members: +``` + +## Geometry + +```{eval-rst} +.. automodule:: amworkflow.geometry.geometry + :members: +``` + +## Meshing + +```{eval-rst} +.. automodule:: amworkflow.meshing.meshing + :members: +``` + +## Simulation + +```{eval-rst} +.. automodule:: amworkflow.simulation.simulation + :members: +``` + +## Experiment + +```{eval-rst} +.. automodule:: amworkflow.simulation.experiment + :members: +``` \ No newline at end of file diff --git a/_static/_sphinx_javascript_frameworks_compat.js b/_static/_sphinx_javascript_frameworks_compat.js new file mode 100644 index 0000000..8141580 --- /dev/null +++ b/_static/_sphinx_javascript_frameworks_compat.js @@ -0,0 +1,123 @@ +/* Compatability shim for jQuery and underscores.js. + * + * Copyright Sphinx contributors + * Released under the two clause BSD licence + */ + +/** + * small helper function to urldecode strings + * + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL + */ +jQuery.urldecode = function(x) { + if (!x) { + return x + } + return decodeURIComponent(x.replace(/\+/g, ' ')); +}; + +/** + * small helper function to urlencode strings + */ +jQuery.urlencode = encodeURIComponent; + +/** + * This function returns the parsed url parameters of the + * current request. 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+ +/** + * Simple result scoring code. + */ +if (typeof Scorer === "undefined") { + var Scorer = { + // Implement the following function to further tweak the score for each result + // The function takes a result array [docname, title, anchor, descr, score, filename] + // and returns the new score. + /* + score: result => { + const [docname, title, anchor, descr, score, filename] = result + return score + }, + */ + + // query matches the full name of an object + objNameMatch: 11, + // or matches in the last dotted part of the object name + objPartialMatch: 6, + // Additive scores depending on the priority of the object + objPrio: { + 0: 15, // used to be importantResults + 1: 5, // used to be objectResults + 2: -5, // used to be unimportantResults + }, + // Used when the priority is not in the mapping. + objPrioDefault: 0, + + // query found in title + title: 15, + partialTitle: 7, + // query found in terms + term: 5, + partialTerm: 2, + }; +} + +const _removeChildren = (element) => { + while (element && element.lastChild) element.removeChild(element.lastChild); +}; + +/** + * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Guide/Regular_Expressions#escaping + */ +const _escapeRegExp = (string) => + string.replace(/[.*+\-?^${}()|[\]\\]/g, "\\$&"); // $& means the whole matched string + +const _displayItem = (item, searchTerms, highlightTerms) => { + const docBuilder = DOCUMENTATION_OPTIONS.BUILDER; + const docFileSuffix = DOCUMENTATION_OPTIONS.FILE_SUFFIX; + const docLinkSuffix = DOCUMENTATION_OPTIONS.LINK_SUFFIX; + const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY; + const contentRoot = document.documentElement.dataset.content_root; + + const [docName, title, anchor, descr, score, _filename] = item; + + let listItem = document.createElement("li"); + let requestUrl; + let linkUrl; + if (docBuilder === "dirhtml") { + // dirhtml builder + let dirname = docName + "/"; + if (dirname.match(/\/index\/$/)) + dirname = dirname.substring(0, dirname.length - 6); + else if (dirname === "index/") dirname = ""; + requestUrl = contentRoot + dirname; + linkUrl = requestUrl; + } else { + // normal html builders + requestUrl = contentRoot + docName + docFileSuffix; + linkUrl = docName + docLinkSuffix; + } + let linkEl = listItem.appendChild(document.createElement("a")); + linkEl.href = linkUrl + anchor; + linkEl.dataset.score = score; + linkEl.innerHTML = title; + if (descr) { + listItem.appendChild(document.createElement("span")).innerHTML = + " (" + descr + ")"; + // highlight search terms in the description + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + } + else if (showSearchSummary) + fetch(requestUrl) + .then((responseData) => responseData.text()) + .then((data) => { + if (data) + listItem.appendChild( + Search.makeSearchSummary(data, searchTerms, anchor) + ); + // highlight search terms in the summary + if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js + highlightTerms.forEach((term) => _highlightText(listItem, term, "highlighted")); + }); + Search.output.appendChild(listItem); +}; +const _finishSearch = (resultCount) => { + Search.stopPulse(); + Search.title.innerText = _("Search Results"); + if (!resultCount) + Search.status.innerText = Documentation.gettext( + "Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories." + ); + else + Search.status.innerText = _( + "Search finished, found ${resultCount} page(s) matching the search query." + ).replace('${resultCount}', resultCount); +}; +const _displayNextItem = ( + results, + resultCount, + searchTerms, + highlightTerms, +) => { + // results left, load the summary and display it + // this is intended to be dynamic (don't sub resultsCount) + if (results.length) { + _displayItem(results.pop(), searchTerms, highlightTerms); + setTimeout( + () => _displayNextItem(results, resultCount, searchTerms, highlightTerms), + 5 + ); + } + // search finished, update title and status message + else _finishSearch(resultCount); +}; +// Helper function used by query() to order search results. +// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Order the results by score (in opposite order of appearance, since the +// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. +const _orderResultsByScoreThenName = (a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; +}; + +/** + * Default splitQuery function. Can be overridden in ``sphinx.search`` with a + * custom function per language. + * + * The regular expression works by splitting the string on consecutive characters + * that are not Unicode letters, numbers, underscores, or emoji characters. + * This is the same as ``\W+`` in Python, preserving the surrogate pair area. + */ +if (typeof splitQuery === "undefined") { + var splitQuery = (query) => query + .split(/[^\p{Letter}\p{Number}_\p{Emoji_Presentation}]+/gu) + .filter(term => term) // remove remaining empty strings +} + +/** + * Search Module + */ +const Search = { + _index: null, + _queued_query: null, + _pulse_status: -1, + + htmlToText: (htmlString, anchor) => { + const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); + for (const removalQuery of [".headerlink", "script", "style"]) { + htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); + } + if (anchor) { + const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); + if (anchorContent) return anchorContent.textContent; + + console.warn( + `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` + ); + } + + // if anchor not specified or not found, fall back to main content + const docContent = htmlElement.querySelector('[role="main"]'); + if (docContent) return docContent.textContent; + + console.warn( + "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." + ); + return ""; + }, + + init: () => { + const query = new URLSearchParams(window.location.search).get("q"); + document + .querySelectorAll('input[name="q"]') + .forEach((el) => (el.value = query)); + if (query) Search.performSearch(query); + }, + + loadIndex: (url) => + (document.body.appendChild(document.createElement("script")).src = url), + + setIndex: (index) => { + Search._index = index; + if (Search._queued_query !== null) { + const query = Search._queued_query; + Search._queued_query = null; + Search.query(query); + } + }, + + hasIndex: () => Search._index !== null, + + deferQuery: (query) => (Search._queued_query = query), + + stopPulse: () => (Search._pulse_status = -1), + + startPulse: () => { + if (Search._pulse_status >= 0) return; + + const pulse = () => { + Search._pulse_status = (Search._pulse_status + 1) % 4; + Search.dots.innerText = ".".repeat(Search._pulse_status); + if (Search._pulse_status >= 0) window.setTimeout(pulse, 500); + }; + pulse(); + }, + + /** + * perform a search for something (or wait until index is loaded) + */ + performSearch: (query) => { + // create the required interface elements + const searchText = document.createElement("h2"); + searchText.textContent = _("Searching"); + const searchSummary = document.createElement("p"); + searchSummary.classList.add("search-summary"); + searchSummary.innerText = ""; + const searchList = document.createElement("ul"); + searchList.classList.add("search"); + + const out = document.getElementById("search-results"); + Search.title = out.appendChild(searchText); + Search.dots = Search.title.appendChild(document.createElement("span")); + Search.status = out.appendChild(searchSummary); + Search.output = out.appendChild(searchList); + + const searchProgress = document.getElementById("search-progress"); + // Some themes don't use the search progress node + if (searchProgress) { + searchProgress.innerText = _("Preparing search..."); + } + Search.startPulse(); + + // index already loaded, the browser was quick! + if (Search.hasIndex()) Search.query(query); + else Search.deferQuery(query); + }, + + _parseQuery: (query) => { + // stem the search terms and add them to the correct list + const stemmer = new Stemmer(); + const searchTerms = new Set(); + const excludedTerms = new Set(); + const highlightTerms = new Set(); + const objectTerms = new Set(splitQuery(query.toLowerCase().trim())); + splitQuery(query.trim()).forEach((queryTerm) => { + const queryTermLower = queryTerm.toLowerCase(); + + // maybe skip this "word" + // stopwords array is from language_data.js + if ( + stopwords.indexOf(queryTermLower) !== -1 || + queryTerm.match(/^\d+$/) + ) + return; + + // stem the word + let word = stemmer.stemWord(queryTermLower); + // select the correct list + if (word[0] === "-") excludedTerms.add(word.substr(1)); + else { + searchTerms.add(word); + highlightTerms.add(queryTermLower); + } + }); + + if (SPHINX_HIGHLIGHT_ENABLED) { // set in sphinx_highlight.js + localStorage.setItem("sphinx_highlight_terms", [...highlightTerms].join(" ")) + } + + // console.debug("SEARCH: searching for:"); + // console.info("required: ", [...searchTerms]); + // console.info("excluded: ", [...excludedTerms]); + + return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; + }, + + /** + * execute search (requires search index to be loaded) + */ + _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // Collect multiple result groups to be sorted separately and then ordered. + // Each is an array of [docname, title, anchor, descr, score, filename]. + const normalResults = []; + const nonMainIndexResults = []; + + _removeChildren(document.getElementById("search-progress")); + + const queryLower = query.toLowerCase().trim(); + for (const [title, foundTitles] of Object.entries(allTitles)) { + if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { + for (const [file, id] of foundTitles) { + const score = Math.round(Scorer.title * queryLower.length / title.length); + const boost = titles[file] === title ? 1 : 0; // add a boost for document titles + normalResults.push([ + docNames[file], + titles[file] !== title ? `${titles[file]} > ${title}` : title, + id !== null ? "#" + id : "", + null, + score + boost, + filenames[file], + ]); + } + } + } + + // search for explicit entries in index directives + for (const [entry, foundEntries] of Object.entries(indexEntries)) { + if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { + for (const [file, id, isMain] of foundEntries) { + const score = Math.round(100 * queryLower.length / entry.length); + const result = [ + docNames[file], + titles[file], + id ? "#" + id : "", + null, + score, + filenames[file], + ]; + if (isMain) { + normalResults.push(result); + } else { + nonMainIndexResults.push(result); + } + } + } + } + + // lookup as object + objectTerms.forEach((term) => + normalResults.push(...Search.performObjectSearch(term, objectTerms)) + ); + + // lookup as search terms in fulltext + normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + + // let the scorer override scores with a custom scoring function + if (Scorer.score) { + normalResults.forEach((item) => (item[4] = Scorer.score(item))); + nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); + } + + // Sort each group of results by score and then alphabetically by name. + normalResults.sort(_orderResultsByScoreThenName); + nonMainIndexResults.sort(_orderResultsByScoreThenName); + + // Combine the result groups in (reverse) order. + // Non-main index entries are typically arbitrary cross-references, + // so display them after other results. + let results = [...nonMainIndexResults, ...normalResults]; + + // remove duplicate search results + // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept + let seen = new Set(); + results = results.reverse().reduce((acc, result) => { + let resultStr = result.slice(0, 4).concat([result[5]]).map(v => String(v)).join(','); + if (!seen.has(resultStr)) { + acc.push(result); + seen.add(resultStr); + } + return acc; + }, []); + + return results.reverse(); + }, + + query: (query) => { + const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); + const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); + + // for debugging + //Search.lastresults = results.slice(); // a copy + // console.info("search results:", Search.lastresults); + + // print the results + _displayNextItem(results, results.length, searchTerms, highlightTerms); + }, + + /** + * search for object names + */ + performObjectSearch: (object, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const objects = Search._index.objects; + const objNames = Search._index.objnames; + const titles = Search._index.titles; + + const results = []; + + const objectSearchCallback = (prefix, match) => { + const name = match[4] + const fullname = (prefix ? prefix + "." : "") + name; + const fullnameLower = fullname.toLowerCase(); + if (fullnameLower.indexOf(object) < 0) return; + + let score = 0; + const parts = fullnameLower.split("."); + + // check for different match types: exact matches of full name or + // "last name" (i.e. last dotted part) + if (fullnameLower === object || parts.slice(-1)[0] === object) + score += Scorer.objNameMatch; + else if (parts.slice(-1)[0].indexOf(object) > -1) + score += Scorer.objPartialMatch; // matches in last name + + const objName = objNames[match[1]][2]; + const title = titles[match[0]]; + + // If more than one term searched for, we require other words to be + // found in the name/title/description + const otherTerms = new Set(objectTerms); + otherTerms.delete(object); + if (otherTerms.size > 0) { + const haystack = `${prefix} ${name} ${objName} ${title}`.toLowerCase(); + if ( + [...otherTerms].some((otherTerm) => haystack.indexOf(otherTerm) < 0) + ) + return; + } + + let anchor = match[3]; + if (anchor === "") anchor = fullname; + else if (anchor === "-") anchor = objNames[match[1]][1] + "-" + fullname; + + const descr = objName + _(", in ") + title; + + // add custom score for some objects according to scorer + if (Scorer.objPrio.hasOwnProperty(match[2])) + score += Scorer.objPrio[match[2]]; + else score += Scorer.objPrioDefault; + + results.push([ + docNames[match[0]], + fullname, + "#" + anchor, + descr, + score, + filenames[match[0]], + ]); + }; + Object.keys(objects).forEach((prefix) => + objects[prefix].forEach((array) => + objectSearchCallback(prefix, array) + ) + ); + return results; + }, + + /** + * search for full-text terms in the index + */ + performTermsSearch: (searchTerms, excludedTerms) => { + // prepare search + const terms = Search._index.terms; + const titleTerms = Search._index.titleterms; + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + + const scoreMap = new Map(); + const fileMap = new Map(); + + // perform the search on the required terms + searchTerms.forEach((word) => { + const files = []; + const arr = [ + { files: terms[word], score: Scorer.term }, + { files: titleTerms[word], score: Scorer.title }, + ]; + // add support for partial matches + if (word.length > 2) { + const escapedWord = _escapeRegExp(word); + if (!terms.hasOwnProperty(word)) { + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + } + if (!titleTerms.hasOwnProperty(word)) { + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); + }); + } + } + + // no match but word was a required one + if (arr.every((record) => record.files === undefined)) return; + + // found search word in contents + arr.forEach((record) => { + if (record.files === undefined) return; + + let recordFiles = record.files; + if (recordFiles.length === undefined) recordFiles = [recordFiles]; + files.push(...recordFiles); + + // set score for the word in each file + recordFiles.forEach((file) => { + if (!scoreMap.has(file)) scoreMap.set(file, {}); + scoreMap.get(file)[word] = record.score; + }); + }); + + // create the mapping + files.forEach((file) => { + if (!fileMap.has(file)) fileMap.set(file, [word]); + else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); + }); + }); + + // now check if the files don't contain excluded terms + const results = []; + for (const [file, wordList] of fileMap) { + // check if all requirements are matched + + // as search terms with length < 3 are discarded + const filteredTermCount = [...searchTerms].filter( + (term) => term.length > 2 + ).length; + if ( + wordList.length !== searchTerms.size && + wordList.length !== filteredTermCount + ) + continue; + + // ensure that none of the excluded terms is in the search result + if ( + [...excludedTerms].some( + (term) => + terms[term] === file || + titleTerms[term] === file || + (terms[term] || []).includes(file) || + (titleTerms[term] || []).includes(file) + ) + ) + break; + + // select one (max) score for the file. + const score = Math.max(...wordList.map((w) => scoreMap.get(file)[w])); + // add result to the result list + results.push([ + docNames[file], + titles[file], + "", + null, + score, + filenames[file], + ]); + } + return results; + }, + + /** + * helper function to return a node containing the + * search summary for a given text. keywords is a list + * of stemmed words. + */ + makeSearchSummary: (htmlText, keywords, anchor) => { + const text = Search.htmlToText(htmlText, anchor); + if (text === "") return null; + + const textLower = text.toLowerCase(); + const actualStartPosition = [...keywords] + .map((k) => textLower.indexOf(k.toLowerCase())) + .filter((i) => i > -1) + .slice(-1)[0]; + const startWithContext = Math.max(actualStartPosition - 120, 0); + + const top = startWithContext === 0 ? "" : "..."; + const tail = startWithContext + 240 < text.length ? "..." : ""; + + let summary = document.createElement("p"); + summary.classList.add("context"); + summary.textContent = top + text.substr(startWithContext, 240).trim() + tail; + + return summary; + }, +}; + +_ready(Search.init); diff --git a/_static/sphinx_highlight.js b/_static/sphinx_highlight.js new file mode 100644 index 0000000..8a96c69 --- /dev/null +++ b/_static/sphinx_highlight.js @@ -0,0 +1,154 @@ +/* Highlighting utilities for Sphinx HTML documentation. */ +"use strict"; + +const SPHINX_HIGHLIGHT_ENABLED = true + +/** + * highlight a given string on a node by wrapping it in + * span elements with the given class name. + */ +const _highlight = (node, addItems, text, className) => { + if (node.nodeType === Node.TEXT_NODE) { + const val = node.nodeValue; + const parent = node.parentNode; + const pos = val.toLowerCase().indexOf(text); + if ( + pos >= 0 && + !parent.classList.contains(className) && + !parent.classList.contains("nohighlight") + ) { + let span; + + const closestNode = parent.closest("body, svg, foreignObject"); + const isInSVG = closestNode && closestNode.matches("svg"); + if (isInSVG) { + span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); + } else { + span = document.createElement("span"); + span.classList.add(className); + } + + span.appendChild(document.createTextNode(val.substr(pos, text.length))); + const rest = document.createTextNode(val.substr(pos + text.length)); + parent.insertBefore( + span, + parent.insertBefore( + rest, + node.nextSibling + ) + ); + node.nodeValue = val.substr(0, pos); + /* There may be more occurrences of search term in this node. So call this + * function recursively on the remaining fragment. + */ + _highlight(rest, addItems, text, className); + + if (isInSVG) { + const rect = document.createElementNS( + "http://www.w3.org/2000/svg", + "rect" + ); + const bbox = parent.getBBox(); + rect.x.baseVal.value = bbox.x; + rect.y.baseVal.value = bbox.y; + rect.width.baseVal.value = bbox.width; + rect.height.baseVal.value = bbox.height; + rect.setAttribute("class", className); + addItems.push({ parent: parent, target: rect }); + } + } + } else if (node.matches && !node.matches("button, select, textarea")) { + node.childNodes.forEach((el) => _highlight(el, addItems, text, className)); + } +}; +const _highlightText = (thisNode, text, className) => { + let addItems = []; + _highlight(thisNode, addItems, text, className); + addItems.forEach((obj) => + obj.parent.insertAdjacentElement("beforebegin", obj.target) + ); +}; + +/** + * Small JavaScript module for the documentation. + */ +const SphinxHighlight = { + + /** + * highlight the search words provided in localstorage in the text + */ + highlightSearchWords: () => { + if (!SPHINX_HIGHLIGHT_ENABLED) return; // bail if no highlight + + // get and clear terms from localstorage + const url = new URL(window.location); + const highlight = + localStorage.getItem("sphinx_highlight_terms") + || url.searchParams.get("highlight") + || ""; + localStorage.removeItem("sphinx_highlight_terms") + url.searchParams.delete("highlight"); + window.history.replaceState({}, "", url); + + // get individual terms from highlight string + const terms = highlight.toLowerCase().split(/\s+/).filter(x => x); + if (terms.length === 0) return; // nothing to do + + // There should never be more than one element matching "div.body" + const divBody = document.querySelectorAll("div.body"); + const body = divBody.length ? divBody[0] : document.querySelector("body"); + window.setTimeout(() => { + terms.forEach((term) => _highlightText(body, term, "highlighted")); + }, 10); + + const searchBox = document.getElementById("searchbox"); + if (searchBox === null) return; + searchBox.appendChild( + document + .createRange() + .createContextualFragment( + '" + ) + ); + }, + + /** + * helper function to hide the search marks again + */ + hideSearchWords: () => { + document + .querySelectorAll("#searchbox .highlight-link") + .forEach((el) => el.remove()); + document + .querySelectorAll("span.highlighted") + .forEach((el) => el.classList.remove("highlighted")); + localStorage.removeItem("sphinx_highlight_terms") + }, + + initEscapeListener: () => { + // only install a listener if it is really needed + if (!DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS) return; + + document.addEventListener("keydown", (event) => { + // bail for input elements + if (BLACKLISTED_KEY_CONTROL_ELEMENTS.has(document.activeElement.tagName)) return; + // bail with special keys + if (event.shiftKey || event.altKey || event.ctrlKey || event.metaKey) return; + if (DOCUMENTATION_OPTIONS.ENABLE_SEARCH_SHORTCUTS && (event.key === "Escape")) { + SphinxHighlight.hideSearchWords(); + event.preventDefault(); + } + }); + }, +}; + +_ready(() => { + /* Do not call highlightSearchWords() when we are on the search page. + * It will highlight words from the *previous* search query. + */ + if (typeof Search === "undefined") SphinxHighlight.highlightSearchWords(); + SphinxHighlight.initEscapeListener(); +}); diff --git a/genindex.html b/genindex.html new file mode 100644 index 0000000..0c34565 --- /dev/null +++ b/genindex.html @@ -0,0 +1,485 @@ + + + + + + Index — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
  • + +
  • +
  • +
+
+
+
+
+ + +

Index

+ +
+ A + | B + | C + | D + | E + | F + | G + | H + | I + | L + | M + | N + | P + | R + | S + | U + | W + | Z + +
+

A

+ + + +
    +
  • + amworkflow.gcode.gcode + +
  • +
  • + amworkflow.geometry.builtinCAD + +
  • +
  • + amworkflow.geometry.geometry + +
  • +
  • + amworkflow.meshing.meshing + +
  • +
+ +

B

+ + + +
+ +

C

+ + + +
+ +

D

+ + + +
+ +

E

+ + + +
+ +

F

+ + +
+ +

G

+ + + +
+ +

H

+ + + +
+ +

I

+ + + +
+ +

L

+ + +
+ +

M

+ + + +
+ +

N

+ + +
+ +

P

+ + + +
+ +

R

+ + + +
+ +

S

+ + + +
+ +

U

+ + +
+ +

W

+ + +
+ +

Z

+ + +
+ + + +
+
+
+ +
+ +
+

© Copyright 2024, Annika Robens-Radermacher, Yuxiang He.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + \ No newline at end of file diff --git a/index.html b/index.html new file mode 100644 index 0000000..c918c91 --- /dev/null +++ b/index.html @@ -0,0 +1,1312 @@ + + + + + + + AMworkflow — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

AMworkflow

+
+

Dev on Documentation

+
    +
  • Prerequisite: Sphinx, sphinx-autobuild, sphinx-rtd-theme, sphinxcontrib-applehelp, sphinxcontrib-devhelp, sphinxcontrib-htmlhelp, sphinxcontrib-jquery, sphinxcontrib-jsmath, sphinxcontrib-qthelp, sphinxcontrib-serializinghtml.

  • +
  • How does it work? +Use the command:

  • +
+

sphinx-autobuild . _build/html

+

The server should be ready on Localhost Port 8000 and it auto builds when changes made.

+
+
+

Introduction

+

Some Intro

+
+
+

Project Organization

+
.
+├── config
+│   └── settings.py
+├── dependencies
+│   └── OCCUtils-0.1.dev0-py3-none-any.whl
+├── gcode
+│   ├── config
+│      ├── ConcretePrinter.yaml
+│      ├── ConcretePrinter_BAM.yaml
+│      ├── PowderBedBAM.yaml
+│      ├── RS-274D_config.ini
+│      └── RepRap.yaml
+│   ├── gcode.py
+│   └── printer_config.py
+├── geometry
+│   ├── builtinCAD.py
+│   └── geometry.py
+├── meshing
+│   └── meshing.py
+├── occ_helpers.py
+└── simulation
+    ├── experiment.py
+    ├── simulation.py
+    └── tests
+
+
+
+
+

BuiltinCAD

+
    +
  • Shortest_distance_point_line +Small dist line point +The function returns the shortest distance between a point and a line (segment). For example in figure above the result will be \((\frac{L_1}{L_1+L_2},d_{min})\).

  • +
+
+
+amworkflow.geometry.builtinCAD.shortest_distance_point_line(line: list | Segment | ndarray, p: list | Segment | ndarray)[source]
+

Calculate the shortest distance between a point and a line (segment).

+
+
Parameters:
+
    +
  • line (Union[list, Segment, np.ndarray]) – The line (segment) to be examined.

  • +
  • p (Union[list, Segment, np.ndarray]) – The point to be examined.

  • +
+
+
Returns:
+

The relative coordinate of the point on the line (segment) and The shortest distance between the point and the line (segment).

+
+
Return type:
+

Tuple[Union[int, float], float]

+
+
+
+ + + +
+
+class amworkflow.geometry.builtinCAD.DuplicationCheck(gtype: int, gvalue: any)[source]
+

Check if an item already exists in the index.

+
+
+check_type_coincide(base_type: int, item_type: int) bool[source]
+

Check if items has the same type with the base item.

+
+
Parameters:
+
    +
  • base_type (int) – The type referred

  • +
  • item_type (int) – The type to be examined

  • +
+
+
Returns:
+

True if coincident.

+
+
Return type:
+

bool

+
+
+
+ +
+
+check_type_validity(item_type: int) bool[source]
+

Check if given type if valid

+
+
Parameters:
+

item_type (int) – The type to be examined

+
+
Raises:
+

ValueError – Wrong geometry object type, perhaps a mistake made in development.

+
+
Returns:
+

True if valid

+
+
Return type:
+

bool

+
+
+
+ +
+
+check_value_repetition(base_value: any, item_value: any) bool[source]
+

Check if a value is close enough to the base value. True if repeated. +:param base_value: item to be compared with. +:param item_value: value to be examined.

+
+ +
+
+new_item(item_value: any, item_type) tuple[source]
+

Check if a value already exits in the index +:param item_value: value to be examined.

+
+ +
+ +
+
+class amworkflow.geometry.builtinCAD.Pnt(coord: list = [], loading_state=None)[source]
+

Create a point.

+
+ +
+
+amworkflow.geometry.builtinCAD.angle_of_two_arrays(a1: ndarray, a2: ndarray, rad: bool = True) float[source]
+

@brief Returns the angle between two vectors. This is useful for calculating the rotation angle between a vector and another vector +@param a1 1D array of shape ( n_features ) +@param a2 2D array of shape ( n_features ) +@param rad If True the angle is in radians otherwise in degrees +@return Angle between a1 and a2 in degrees or radians depending on rad = True or False

+
+ +
+
+amworkflow.geometry.builtinCAD.bisect_angle(a1: ndarray | Segment, a2: ndarray | Segment) ndarray[source]
+

@brief Angular bisector between two vectors. The result is a vector splitting the angle between two vectors uniformly. +@param a1 1xN numpy array +@param a2 1xN numpy array +@return the bisector vector

+
+ +
+
+amworkflow.geometry.builtinCAD.find_intersect_node_on_edge(line1: Segment, line2: Segment, update_property: dict | None = None) tuple[source]
+

Find possible intersect node on two lines

+
+
Parameters:
+
    +
  • line1 (Union[np.ndarray, Segment]) – The first line

  • +
  • line2 (Union[np.ndarray, Segment]) – The second line

  • +
  • update_property (dict, optional) – The property to update, defaults to None

  • +
+
+
Returns:
+

The possible intersect node on the two lines

+
+
Return type:
+

tuple

+
+
+
+ +
+
+amworkflow.geometry.builtinCAD.get_from_source(oid: int | None = None, it_value: list | None = None, obj_type: str | None = None, target: str = 'object')[source]
+

A wrapper function to get the object from the source. if oid is not specified, it_value or obj_type will be used. If none of them is specified, all objects will be returned.

+

Notice: In case of stack overflow, when return all objects or all in one type, the function will return a generator.

+
+
Parameters:
+
    +
  • oid (int) – The id of the object to be retrieved.

  • +
  • it_value (list) – The value of the object to be retrieved.

  • +
  • obj_type (str) – The type of the object to be retrieved.

  • +
  • target (str) – The target of the retrieval, either “object” or “property”.

  • +
+
+
Returns:
+

The object retrieved.

+
+
Return type:
+

any

+
+
+
+ +
+
+amworkflow.geometry.builtinCAD.get_literal_vector(a: ndarray, d: bool)[source]
+

@brief This is used to create a vector which is perpendicular to the based vector on its left side ( d = True ) or right side ( d = False ) +@param a vector ( a ) +@param d True if on left or False if on right +@return A vector.

+
+ +
+
+amworkflow.geometry.builtinCAD.get_random_line(xmin, xmax, ymin, ymax, zmin=0, zmax=0)[source]
+

Get a random line within the specified range

+
+
Parameters:
+
    +
  • xmin (int) – The minimum value of x

  • +
  • xmax (int) – The maximum value of x

  • +
  • ymin (int) – The minimum value of y

  • +
  • ymax (int) – The maximum value of y

  • +
  • zmin (int, optional) – The minimum value of z, defaults to 0

  • +
  • zmax (int, optional) – The maximum value of z, defaults to 0

  • +
+
+
Returns:
+

The random line

+
+
Return type:
+

np.ndarray

+
+
+
+ +
+
+amworkflow.geometry.builtinCAD.get_random_pnt(xmin, xmax, ymin, ymax, zmin=0, zmax=0, numpy_array=True) Pnt | ndarray[source]
+

Get a random point within the specified range

+
+
Parameters:
+
    +
  • xmin (int) – The minimum value of x

  • +
  • xmax (int) – The maximum value of x

  • +
  • ymin (int) – The minimum value of y

  • +
  • ymax (int) – The maximum value of y

  • +
  • zmin (int, optional) – The minimum value of z, defaults to 0

  • +
  • zmax (int, optional) – The maximum value of z, defaults to 0

  • +
  • numpy_array (bool, optional) – If True, return a numpy array, otherwise return a Pnt object, defaults to True

  • +
+
+
Returns:
+

The random point

+
+
Return type:
+

Union[Pnt, np.ndarray]

+
+
+
+ +
+
+amworkflow.geometry.builtinCAD.p_rotate(pts: ndarray, angle_x: float = 0, angle_y: float = 0, angle_z: float = 0, cnt: ndarray | None = None) ndarray[source]
+

Rotate points around a center point

+
+
Parameters:
+
    +
  • pts (np.ndarray) – The points to be rotated

  • +
  • angle_x (float, optional) – The angle to rotate around x-axis, defaults to 0

  • +
  • angle_y (float, optional) – The angle to rotate around y-axis, defaults to 0

  • +
  • angle_z (float, optional) – The angle to rotate around z-axis, defaults to 0

  • +
  • cnt (np.ndarray, optional) – The center point to rotate around, defaults to None

  • +
+
+
Returns:
+

The rotated points

+
+
Return type:
+

np.ndarray

+
+
+
+ +
+
+amworkflow.geometry.builtinCAD.pnt(pt_coord) ndarray[source]
+

Create a point. +:param pt_coord: The coordinate of the point. If the dimension is less than 3, the rest will be padded with 0. If the dimension is more than 3, an exception will be raised. +:type pt_coord: list +:return: The coordinate of the point. +:rtype: np.ndarray

+
+ +
+
+amworkflow.geometry.builtinCAD.project_array(array: ndarray, direct: ndarray) ndarray[source]
+

Project an array to the specified direction.

+
+ +
+
+amworkflow.geometry.builtinCAD.read_from_csv(file_path: str, delimiter: str = ',') list[source]
+

Read data from a csv file

+
+
Parameters:
+
    +
  • file_path (str) – The path of the csv file

  • +
  • delimiter (str, optional) – The delimiter of the csv file, defaults to “,”

  • +
+
+
Returns:
+

The data read from the csv file

+
+
Return type:
+

list

+
+
+
+ +
+
+amworkflow.geometry.builtinCAD.send_to_source(obj: TopoObj, obj_property: dict)[source]
+

A wrapper function to send the object to the source.

+
+
Parameters:
+
    +
  • obj (TopoObj) – The object to be sent.

  • +
  • obj_property (dict) – The property of the object to be sent.

  • +
+
+
+
+ +
+
+amworkflow.geometry.builtinCAD.update_source(obj: TopoObj, obj_property: dict | None = None)[source]
+

A wrapper function to update the source of the object. +:param obj: The object to be updated. +:type obj: TopoObj +:param obj_property: The property of the object to be updated. +:type obj_property: dict

+
+ +
+
+

Gcode

+
+
+class amworkflow.gcode.gcode.Gcode(*args, **kwargs)[source]
+

Base class with API for any gcode writer.

+
+
+create(in_file: Path, out_gcode: Path) None[source]
+

Create gcode file by given path file or geometry file

+
+
Parameters:
+
    +
  • in_file – File path to path point file or stl file from geometry step

  • +
  • file. (out_gcode File path of output gcode)

  • +
+
+
+

Returns:

+
+ +
+
+load_standard(standard: str | None = None)[source]
+

Load standard config file

+
+
Parameters:
+

standard – defaults to None

+
+
+
+ +
+ +
+
+class amworkflow.gcode.gcode.GcodeFromPoints(layer_num: float = 1, layer_height: float = 1, line_width: float = 1, offset_from_origin: ndarray | bool | None = None, unit: str = 'mm', standard: str = 'ConcretePrinter', coordinate_system: str = 'absolute', nozzle_diameter: float = 0.4, kappa: float = 1, gamma: float = -1, delta: float = 1, tool_number: int = 0, feedrate: int = 1800, fixed_feedrate: bool = False, pumpspeed: float | None = None, rotate: bool = False, density: float = 1, ramp: bool = False, **kwargs)[source]
+

Gcode writer from path points.

+
+
+compute_extrusion(p0: list, p1: list)[source]
+

Compute the extrusion length. rectify the extrusion length by the kappa factor.

+
+
Parameters:
+
    +
  • p0 (list) – The previous point

  • +
  • p1 (list) – The current point

  • +
+
+
Returns:
+

The extrusion length

+
+
Return type:
+

float

+
+
+
+ +
+
+create(in_file: Path, out_gcode: Path | None = None) None[source]
+

Create gcode file by given path point file plus additional log_file

+
+
Parameters:
+
    +
  • in_file – File path to path point file

  • +
  • out_gcode – File path to gcode file.

  • +
+
+
+

Returns:

+
+ +
+
+elevate(z: float, f: float | None = None)[source]
+

Elevate to a height

+
+
Parameters:
+
    +
  • z (float) – z coordinate

  • +
  • f (float, optional) – feed rate, defaults to None

  • +
+
+
Returns:
+

string of gcode command

+
+
Return type:
+

str

+
+
+
+ +
+
+head_tail()[source]
+

create container of header and tail of gcode depending on selected standard

+
+ +
+
+init_gcode()[source]
+

Initialize gcode

+
+ +
+
+move(p: list, e: float | bool | None = None, f: float | bool | None = None, s: float | bool | None = None)[source]
+

Move to a point in XY or XYZ plane

+
+ +
+
+read_points(csv_file: str)[source]
+

Read points from file x and y is mandatory, z coordination optional

+
+
Parameters:
+

filepath – Path to file

+
+
Returns:
+

List of points

+
+
Return type:
+

points

+
+
+
+ +
+
+reset_extrusion()[source]
+

Reset extrusion length

+
+
Returns:
+

string of gcode command

+
+
Return type:
+

str

+
+
+
+ +
+
+set_coordinate_system()[source]
+

Set coordinate system

+
+
Raises:
+

ValueError – Value error

+
+
Returns:
+

string of gcode command

+
+
Return type:
+

str

+
+
+
+ +
+
+set_fanspeed(speed)[source]
+

Set fan speed +:param speed: fan speed +:type speed: float +:return: string of gcode command +:rtype: str

+
+ +
+
+set_temperature(temperature)[source]
+

Set temperature

+
+
Parameters:
+

temperature (float) – temperature

+
+
Returns:
+

string of gcode command

+
+
Return type:
+

str

+
+
+
+ +
+
+set_tool(tool_number)[source]
+

set tool

+
+
Parameters:
+

tool_number (int) – tool number

+
+
Returns:
+

string of gcode command

+
+
Return type:
+

str

+
+
+
+ +
+
+set_unit(unit)[source]
+

Set unit

+
+
Parameters:
+

unit (str) – unit

+
+
Raises:
+

ValueError – Value error

+
+
Returns:
+

string of gcode command

+
+
Return type:
+

str

+
+
+
+ +
+
+write_gcode(filename: str, gcode: str)[source]
+

Write gcode to file

+
+
Parameters:
+
    +
  • filename (str) – file name

  • +
  • gcode (str) – gcode string

  • +
+
+
+
+ +
+ +
+
+class amworkflow.gcode.gcode.PowderbedCodeFromSTL(standard: str = 'PowderBedBAM', in_file_path: str | None = None, stl_unit: float = 1, debug_mode: bool = False, add_zeros: int = 0, **kwargs)[source]
+

Print instructions writer from stl file

+
+
+create(in_file: Path, out_dsmn: Path, out_xyz: Path, out_dsmn_dir: Path | None = None) None[source]
+

Create dsmn printer instructions file by given stl file

+
+
Parameters:
+
    +
  • in_file – File path to path point file

  • +
  • out_dsmn – Name of output dsmn file.

  • +
  • out_xyz – Name of output xyz file.

  • +
  • out_dsmn_dir – Directory of output dsmn file. If not given, One output folder will be created in the root directory of the project.

  • +
+
+
+

Returns:

+
+ +
+ +
+
+

Geometry

+
+
+class amworkflow.geometry.geometry.Geometry(*args, **kwargs)[source]
+

Base class with API for any geometry creation.

+
+
+create(out_step: Path, out_path: Path, out_stl: Path | None = None) None[source]
+

Create step and stl file from the geometry.

+
+

To be defined in child classes.

+
+
+
Parameters:
+
    +
  • out_step – File path of step file.

  • +
  • out_path – File path of file containing the print path points (csv).

  • +
  • out_path – File path of file containing the print path points (csv).

  • +
  • out_stl – Optional file path of stl file.

  • +
+
+
+

Returns:

+
+ +
+ +
+
+class amworkflow.geometry.geometry.GeometryCenterline(points: ndarray | None = None, layer_thickness: float | None = None, height: float | None = None, is_close: bool = True, **kwargs)[source]
+
+
+geometry_spawn() TopoDS_Shape[source]
+

Define geometry from centerline points +Returns:

+
+ +
+ +
+
+class amworkflow.geometry.geometry.GeometryOCC(stl_linear_deflection: float = 0.001, stl_angular_deflection: float = 0.1, **kwargs)[source]
+

Geometry base class for OCC geometry creation.

+
+
+create(out_step: Path, out_path: Path, out_stl: Path | None = None) None[source]
+

Create step and stl file from OCC shape geometry created by function geometry_spawn.

+
+
Parameters:
+
    +
  • out_step – File path of step file.

  • +
  • out_path – File path of file containing the print path points.

  • +
  • out_stl – File path of stl file.

  • +
+
+
+

Returns:

+
+ +
+
+geometry_spawn() TopoDS_Shape[source]
+

Define geometry using occ fct or own.

+
+

To be overwritten by user.

+
+

Args:

+
+
Returns:
+

OCC shape. +points: list of centerline points (x,y,z)

+
+
Return type:
+

shape

+
+
+
+ +
+ +
+
+class amworkflow.geometry.geometry.GeometryParamWall(height: float | None = None, length: float | None = None, width: float | None = None, line_width: float | None = None, radius: float | None = None, infill: Literal['solid', 'honeycomb', 'zigzag'] | None = None, infill_num: int = 1, layer_thickness: float | None = None, **kwargs)[source]
+
+
+geometry_spawn() TopoDS_Shape[source]
+

Define wall geometry based on given parameters.

+

Args:

+
+
Returns:
+

OCC shape.

+
+
Return type:
+

shape

+
+
+
+ +
+
+honeycomb_infill(overall_length: float, overall_width: float, line_width: float, honeycomb_num: int = 1, angle: float = 1.1468, regular: bool = False, side_len: float | None = None, expand_factor: float = 0)[source]
+

Create honeycomb geometry.

+
+
Parameters:
+
    +
  • overall_length – Length of the honeycomb infill.

  • +
  • overall_width – Width of the honeycomb infill.

  • +
  • line_width – Width of the honeycomb lines.

  • +
  • honeycomb_num – Number of honeycomb units.

  • +
  • angle – Angle of the honeycomb lines.

  • +
  • regular – Regular honeycomb or not. A regular honeycomb has a fixed side length.

  • +
  • side_len – Side length of the honeycomb.

  • +
  • expand_factor – Factor to expand the honeycomb geometry.

  • +
+
+
Returns:
+

Array of points defining the honeycomb geometry.

+
+
Return type:
+

np.ndarray

+
+
+
+ +
+
+zigzag_infill(overall_length: float, overall_width: float, line_width: float, zigzag_num: int = 1, angle: float = 1.1468, regular: bool = False, side_len: float | None = None, expand_factor: float = 0)[source]
+

Create zigzag geometry.

+
+
Parameters:
+
    +
  • overall_length – Length of the zigzag infill.

  • +
  • overall_width – Width of the zigzag infill.

  • +
  • line_width – Width of the zigzag lines.

  • +
  • zigzag_num – Number of zigzag units.

  • +
  • angle – Angle of the zigzag lines.

  • +
  • regular – Regular zigzag or not. A regular zigzag is equivalent to a diamond.

  • +
  • side_len – Side length of the zigzag.

  • +
  • expand_factor – Factor to expand the zigzag geometry.

  • +
+
+
Returns:
+

Array of points defining the zigzag geometry.

+
+
Return type:
+

np.ndarray

+
+
+
+ +
+ +
+
+

Meshing

+
+
+class amworkflow.meshing.meshing.Meshing(*args, **kwargs)[source]
+

Base class with API for any meshing.

+
+
+create(step_file: Path, out_xdmf: Path, out_vtk: Path | None = None) None[source]
+

Create mesh xdmf file and possibly vtk file from input step file.

+
+
Parameters:
+
    +
  • step_file – File path to input geometry step file.

  • +
  • out_xdmf – File path of output xdmf file (maybe others if other mesh engine).

  • +
  • out_vtk – Optional file path of output vtk file.

  • +
+
+
+

Returns:

+
+ +
+ +
+
+class amworkflow.meshing.meshing.MeshingGmsh(mesh_size_factor: float = 0.1, layer_height: float | None = None, number_of_layers: float | None = None, **kwargs)[source]
+
+
+create(step_file: Path, out_xdmf: Path, out_vtk: Path | None = None) None[source]
+

Create mesh xdmf file and possibly vtk file from input step file.

+
+
Parameters:
+
    +
  • step_file – File path to input geometry step file.

  • +
  • out_xdmf – File path of output xdmf file.

  • +
  • out_vtk – Optional file path of output vtk file.

  • +
+
+
+

Returns:

+
+ +
+
+create_mesh(mesh, cell_type: str, prune_z: bool = False) Mesh[source]
+
+
Convert meshio mesh to fenics compatible mesh.

based on https://jsdokken.com/dolfinx-tutorial/chapter3/subdomains.html?highlight=read_mesh

+
+
+
+
Parameters:
+
    +
  • mesh – Mesh read by meshio from msh file (meshio.read(file_msh)).

  • +
  • cell_type – Type of cell to be meshed (e.g. ‘tetra’,’triangle’ …).

  • +
  • prune_z – True for 2D meshes - removes z coordinate.

  • +
+
+
Returns:
+

Mesh which can be saved as xdmf file. (meshio.write(file_xdmf, out_mesh))

+
+
Return type:
+

out_mesh

+
+
+
+ +
+ +
+
+

Simulation

+
+
+class amworkflow.simulation.simulation.Simulation(*args, **kwargs)[source]
+

Base class with API for any simulation.

+
+
+run(mesh_file: Path, out_xdmf: Path) None[source]
+

Run simulation and save results in simulation result file (xdmf file).

+
+
Parameters:
+
    +
  • mesh_file – File path to input mesh file.

  • +
  • out_xdmf – File path of output xdmf file.

  • +
+
+
+

Returns:

+
+ +
+ +
+
+class amworkflow.simulation.simulation.SimulationFenicsXConcrete(pint_parameters: dict, **kwargs)[source]
+
+
+initial_path(time_layer, t_0: float = 0)[source]
+

Define and set initial path in problem describing layer activation.

+

only over height - one layer by time -> negative time, when elements will be reached

+
+
Parameters:
+
    +
  • time_layer – Time to build one layer.

  • +
  • t_0 – Initial time = -end_time last layer

  • +
+
+
Returns:
+

Path function.

+
+
Return type:
+

path

+
+
+
+ +
+
+parameter_description() dict[str, str][source]
+

description of the required parameters for the simulation

+
+ +
+
+run(mesh_file: Path, out_xdmf: Path) None[source]
+

Run simulation and save results in simulation result file (xdmf file).

+
+
Parameters:
+
    +
  • mesh_file – File path to input mesh file.

  • +
  • out_xdmf – File path of output xdmf file.

  • +
+
+
+

Returns:

+
+ +
+ +
+
+

Experiment

+
+
+class amworkflow.simulation.experiment.ExperimentProcess(parameters: dict[str, Quantity] | None = None)[source]
+

Experiment class for AM process simulations.

+

geometry by external mesh file +boundary conditions: fixed on bottom (z==0), am body force in z directory

+
+
+compute_volume() float[source]
+

Computes the volume of the structure

+
+
Returns:
+

volume of the structure

+
+
+
+ +
+
+create_body_force_am(v: Argument, q_fd: Function, rule: QuadratureRule) Form[source]
+

defines body force for am experiments

+

element activation via pseudo density and incremental loading via parameter [“load_time”] computed in class concrete_am

+
+
Parameters:
+
    +
  • v – test_files function

  • +
  • q_fd – quadrature function given the loading increment where elements are active

  • +
  • rule – rule for the quadrature function

  • +
+
+
Returns:
+

form for body force

+
+
+
+ +
+
+create_displacement_boundary(V: FunctionSpace) list[DirichletBCMetaClass][source]
+

defines displacement boundary as fixed at bottom

+
+
Parameters:
+

V – function space

+
+
Returns:
+

list of dirichlet boundary conditions

+
+
+
+ +
+
+static default_parameters() dict[str, Quantity][source]
+

sets up a working set of parameter values as example

+
+
Returns:
+

dictionary with a working set of the required parameter

+
+
+
+ +
+
+static parameter_description() dict[str, str][source]
+

description of the required parameters for the experiment

+
+ +
+
+setup() None[source]
+

Generates the mesh by loading the mesh file given in parameter

+
+ +
+ +
+
+class amworkflow.simulation.experiment.ExperimentStructure(parameters: dict[str, Quantity] | None = None)[source]
+

Experiment class for AM structure simulation in the end (after printing).

+

geometry by external mesh file (z direction == vertical printing direction (layer height)) +boundary conditions from testing controlling via parameter [“bc_setting”]

+
+

fixed_y_bottom: y_min surface fixed and displacement load at y_max surface

+
+

with or without body force param[“rho”] (in y direction) +#TODO: generate sufficient loading cases parameterized!

+
+
+apply_displ_load(top_displacement: Quantity | float) None[source]
+

Updates the applied displacement load

+
+
Parameters:
+

top_displacement – Displacement of the top boundary in mm

+
+
+
+ +
+
+boundary_bottom()[source]
+

specifies boundary: plane at bottom because different for different bc_setting

+

Returns: fct defining if dof is at boundary

+
+ +
+
+compute_volume() float[source]
+

Computes the volume of the structure

+
+
Returns:
+

volume of the structure

+
+
+
+ +
+
+create_body_force(v: Argument) Form[source]
+

defines body force

+
+
Parameters:
+

v – test_files function

+
+
Returns:
+

form for body force

+
+
+
+ +
+
+create_displacement_boundary(V: FunctionSpace) list[DirichletBCMetaClass][source]
+

Defines the displacement boundary conditions

+
+
Parameters:
+

V – Function space of the structure

+
+
Returns:
+

list of DirichletBC objects, defining the boundary conditions

+
+
+
+ +
+
+static default_parameters() dict[str, Quantity][source]
+

sets up a working set of parameter values as example

+
+
Returns:
+

dictionary with a working set of the required parameter

+
+
+
+ +
+
+static parameter_description() dict[str, str][source]
+

description of the required parameters for the experiment

+
+ +
+
+setup() None[source]
+

Generates the mesh loading the mesh file given in parameter

+
+ +
+ +
+
+ + +
+
+
+ +
+ +
+

© Copyright 2024, Annika Robens-Radermacher, Yuxiang He.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
+
+
+
+
+ + + + \ No newline at end of file diff --git a/objects.inv b/objects.inv new file mode 100644 index 0000000..b049a8c Binary files /dev/null and b/objects.inv differ diff --git a/py-modindex.html b/py-modindex.html new file mode 100644 index 0000000..50f62ba --- /dev/null +++ b/py-modindex.html @@ -0,0 +1,149 @@ + + + + + + Python Module Index — amworkflow 1.0 documentation + + + + + + + + + + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
  • + +
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Python Module Index

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+ a
+ amworkflow +
    + amworkflow.gcode.gcode +
    + amworkflow.geometry.builtinCAD +
    + amworkflow.geometry.geometry +
    + amworkflow.meshing.meshing +
    + amworkflow.simulation.experiment +
    + amworkflow.simulation.simulation +
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© Copyright 2024, Annika Robens-Radermacher, Yuxiang He.

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© Copyright 2024, Annika Robens-Radermacher, Yuxiang He.

+
+ + Built with Sphinx using a + theme + provided by Read the Docs. + + +
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+ + + + + + + + + \ No newline at end of file diff --git a/searchindex.js b/searchindex.js new file mode 100644 index 0000000..33dc76f --- /dev/null +++ b/searchindex.js @@ -0,0 +1 @@ +Search.setIndex({"alltitles": {"AMworkflow": [[0, null]], "BuiltinCAD": [[0, "builtincad"]], "Dev on Documentation": [[0, "dev-on-documentation"]], "Experiment": [[0, "module-amworkflow.simulation.experiment"]], "Gcode": [[0, "module-amworkflow.gcode.gcode"]], "Geometry": [[0, "module-amworkflow.geometry.geometry"]], "Introduction": [[0, "introduction"]], "Meshing": [[0, "module-amworkflow.meshing.meshing"]], "Project Organization": [[0, "project-organization"]], "Simulation": [[0, "module-amworkflow.simulation.simulation"]]}, "docnames": ["index"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, 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