-
Notifications
You must be signed in to change notification settings - Fork 104
/
rddata.m
170 lines (164 loc) · 6.64 KB
/
rddata.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
% This programm reads ECG data which are saved in format 212.
% (e.g., 100.dat from MIT-BIH-DB, cu01.dat from CU-DB,...)
% The data are displayed in a figure together with the annotations.
% The annotations are saved in the vector ANNOT, the corresponding
% times (in seconds) are saved in the vector ATRTIME.
% The annotations are saved as numbers, the meaning of the numbers can
% be found in the codetable "ecgcodes.h" available at www.physionet.org.
%
% ANNOT only contains the most important information, which is displayed
% with the program rdann (available on www.physionet.org) in the 3rd row.
% The 4th to 6th row are not saved in ANNOT.
%
%
% created on Feb. 27, 2003 by
% Robert Tratnig (Vorarlberg University of Applied Sciences)
% (email: [email protected]),
%
% algorithm is based on a program written by
% Klaus Rheinberger (University of Innsbruck)
% (email: [email protected])
%
%-------------------------------------------------------------------------
clc; clear all;
%------ SPECIFY DATA ------------------------------------------------------
%------ 指定数据文件 -------------------------------------------------------
PATH= 'F:\MATLAB\MIT-BIH'; % 指定数据的储存路径
HEADERFILE= '100.hea'; % .hea 格式，头文件，可用记事本打开
ATRFILE= '100.atr'; % .atr 格式，属性文件，数据格式为二进制数
DATAFILE='100.dat'; % .dat 格式，ECG 数据
SAMPLES2READ=1800; % 指定需要读入的样本数
% 若.dat文件中存储有两个通道的信号:
% 则读入 2*SAMPLES2READ 个数据
%------ LOAD HEADER DATA --------------------------------------------------
%------ 读入头文件数据 -----------------------------------------------------
%
% 示例：用记事本打开的117.hea 文件的数据
%
% 117 2 360 650000
% 117.dat 212 200 11 1024 839 31170 0 MLII
% 117.dat 212 200 11 1024 930 28083 0 V2
% # 69 M 950 654 x2
% # None
%
%-------------------------------------------------------------------------
fprintf(1,'\\n$> WORKING ON %s ...\n', HEADERFILE); % 在Matlab命令行窗口提示当前工作状态
%
% 【注】函数 fprintf 的功能将格式化的数据写入到指定文件中。
% 表达式：count = fprintf(fid,format,A,...)
% 在字符串'format'的控制下，将矩阵A的实数数据进行格式化，并写入到文件对象fid中。该函数返回所写入数据的字节数 count。
% fid 是通过函数 fopen 获得的整型文件标识符。fid=1，表示标准输出（即输出到屏幕显示）；fid=2，表示标准偏差。
%
signalh= fullfile(PATH, HEADERFILE); % 通过函数 fullfile 获得头文件的完整路径
fid1=fopen(signalh,'r'); % 打开头文件，其标识符为 fid1 ，属性为'r'--“只读”
z= fgetl(fid1); % 读取头文件的第一行数据，字符串格式
A= sscanf(z, '%*s %d %d %d',[1,3]); % 按照格式 '%*s %d %d %d' 转换数据并存入矩阵 A 中
nosig= A(1); % 信号通道数目
sfreq=A(2); % 数据采样频率
clear A; % 清空矩阵 A ，准备获取下一行数据
for k=1:nosig % 读取每个通道信号的数据信息
z= fgetl(fid1);
A= sscanf(z, '%*s %d %d %d %d %d',[1,5]);
dformat(k)= A(1); % 信号格式; 这里只允许为 212 格式
gain(k)= A(2); % 每 mV 包含的整数个数
bitres(k)= A(3); % 采样精度（位分辨率）
zerovalue(k)= A(4); % ECG 信号零点相应的整数值
firstvalue(k)= A(5); % 信号的第一个整数值 (用于偏差测试)
end;
fclose(fid1);
clear A;
%------ LOAD BINARY DATA --------------------------------------------------
%------ 读取 ECG 信号二值数据 ----------------------------------------------
%
if dformat~= [212,212], error('this script does not apply binary formats different to 212.'); end;
signald= fullfile(PATH, DATAFILE); % 读入 212 格式的 ECG 信号数据
fid2=fopen(signald,'r');
A= fread(fid2, [3, SAMPLES2READ], 'uint8')'; % matrix with 3 rows, each 8 bits long, = 2*12bit
fclose(fid2);
% 通过一系列的移位（bitshift）、位与（bitand）运算，将信号由二值数据转换为十进制数
M2H= bitshift(A(:,2), -4); %字节向右移四位，即取字节的高四位
M1H= bitand(A(:,2), 15); %取字节的低四位
PRL=bitshift(bitand(A(:,2),8),9); % sign-bit 取出字节低四位中最高位，向右移九位
PRR=bitshift(bitand(A(:,2),128),5); % sign-bit 取出字节高四位中最高位，向右移五位
M( : , 1)= bitshift(M1H,8)+ A(:,1)-PRL;
M( : , 2)= bitshift(M2H,8)+ A(:,3)-PRR;
if M(1,:) ~= firstvalue, error('inconsistency in the first bit values'); end;
switch nosig
case 2
M( : , 1)= (M( : , 1)- zerovalue(1))/gain(1);
M( : , 2)= (M( : , 2)- zerovalue(2))/gain(2);
TIME=(0:(SAMPLES2READ-1))/sfreq;
case 1
M( : , 1)= (M( : , 1)- zerovalue(1));
M( : , 2)= (M( : , 2)- zerovalue(1));
M=M';
M(1)=[];
sM=size(M);
sM=sM(2)+1;
M(sM)=0;
M=M';
M=M/gain(1);
TIME=(0:2*(SAMPLES2READ)-1)/sfreq;
otherwise % this case did not appear up to now!
% here M has to be sorted!!!
disp('Sorting algorithm for more than 2 signals not programmed yet!');
end;
clear A M1H M2H PRR PRL;
fprintf(1,'\\n$> LOADING DATA FINISHED \n');
%------ LOAD ATTRIBUTES DATA ----------------------------------------------
atrd= fullfile(PATH, ATRFILE); % attribute file with annotation data
fid3=fopen(atrd,'r');
A= fread(fid3, [2, inf], 'uint8')';
fclose(fid3);
ATRTIME=[];
ANNOT=[];
sa=size(A);
saa=sa(1);
i=1;
while i<=saa
annoth=bitshift(A(i,2),-2);
if annoth==59
ANNOT=[ANNOT;bitshift(A(i+3,2),-2)];
ATRTIME=[ATRTIME;A(i+2,1)+bitshift(A(i+2,2),8)+...
bitshift(A(i+1,1),16)+bitshift(A(i+1,2),24)];
i=i+3;
elseif annoth==60
% nothing to do!
elseif annoth==61
% nothing to do!
elseif annoth==62
% nothing to do!
elseif annoth==63
hilfe=bitshift(bitand(A(i,2),3),8)+A(i,1);
hilfe=hilfe+mod(hilfe,2);
i=i+hilfe/2;
else
ATRTIME=[ATRTIME;bitshift(bitand(A(i,2),3),8)+A(i,1)];
ANNOT=[ANNOT;bitshift(A(i,2),-2)];
end;
i=i+1;
end;
ANNOT(length(ANNOT))=[]; % last line = EOF (=0)
ATRTIME(length(ATRTIME))=[]; % last line = EOF
clear A;
ATRTIME= (cumsum(ATRTIME))/sfreq;
ind= find(ATRTIME <= TIME(end));
ATRTIMED= ATRTIME(ind);
ANNOT=round(ANNOT);
ANNOTD= ANNOT(ind);
%------ DISPLAY DATA ------------------------------------------------------
figure(1); clf, box on, hold on
plot(TIME, M(:,1),'r');
if nosig==2
plot(TIME, M(:,2),'b');
end;
for k=1:length(ATRTIMED)
text(ATRTIMED(k),0,num2str(ANNOTD(k)));
end;
xlim([TIME(1), TIME(end)]);
xlabel('Time / s'); ylabel('Voltage / mV');
string=['ECG signal ',DATAFILE];
title(string);
fprintf(1,'\\n$> DISPLAYING DATA FINISHED \n');
% -------------------------------------------------------------------------
fprintf(1,'\\n$> ALL FINISHED \n');