From 90252eb22ad78a835f8bffacc6fa115ac7eef396 Mon Sep 17 00:00:00 2001 From: Khanak Bhargava <56127611+khanakbhargava@users.noreply.github.com> Date: Thu, 8 Feb 2024 15:49:19 -0500 Subject: [PATCH] Adding inputs file currently being used to recreate Pakmor et al 2022 initial conditions (#2743) --- Exec/science/wdmerger/tests/pakmor_inputs | 444 ++++++++++++++++++++++ 1 file changed, 444 insertions(+) create mode 100644 Exec/science/wdmerger/tests/pakmor_inputs diff --git a/Exec/science/wdmerger/tests/pakmor_inputs b/Exec/science/wdmerger/tests/pakmor_inputs new file mode 100644 index 0000000000..8b233cf360 --- /dev/null +++ b/Exec/science/wdmerger/tests/pakmor_inputs @@ -0,0 +1,444 @@ + +############################## CASTRO INPUTS ############################################### + +############################################################################################ +# Geometry +############################################################################################ + +# Non-periodic boundary conditions +geometry.is_periodic = 0 0 0 + +#if AMREX_SPACEDIM == 3 + + # Cartesian coordinate system + geometry.coord_sys = 0 + + # Lower boundary limits in physical space + geometry.prob_lo = -5.12e9 -5.12e9 -5.12e9 + +#elif AMREX_SPACEDIM == 2 + + # Cartesian coordinate system + geometry.coord_sys = 1 + + # Lower boundary limits in physical space + geometry.prob_lo = 0.0e0 -5.12e9 + +#endif + +# Upper boundary limits in physical space +geometry.prob_hi = 5.12e9 5.12e9 5.12e9 + +############################################################################################ +# Boundary conditions +# 0 = Interior 3 = Symmetry +# 1 = Inflow 4 = SlipWall +# 2 = Outflow 5 = NoSlipWall +############################################################################################ + +#if AMREX_SPACEDIM == 3 + + # Boundary conditions on lo x, y, and z edges + castro.lo_bc = 2 2 2 + +#elif AMREX_SPACEDIM == 2 + + # Boundary conditions on lo x, y, and z edges + castro.lo_bc = 3 2 + +#endif + +# Boundary conditions on hi x, y, and z edges +castro.hi_bc = 2 2 2 + +############################################################################################ +# Timestepping +############################################################################################ + +# Maximum coarse timestep +max_step = 10000000 + +# Simulation time to stop at +stop_time = 200.0 + +# CFL number for hyperbolic system +castro.cfl = 0.5 + +# Fixed level 0 timestep; unused if < 0 +castro.fixed_dt = -1.0 + +# Scale back initial timestep by this factor +castro.init_shrink = 0.0001 + +# Factor by which dt is allowed to change each timestep +castro.change_max = 1.05 + +# If we regrid on Level 0, compute a new timestep afterward +amr.compute_new_dt_on_regrid = 1 + +# Use a retry if an advance violated our stability criteria +castro.use_retry = 1 + +# Skip retries for small density if the starting density was less than this threshold +castro.retry_small_density_cutoff = 1.0e0 + +# Don't abort for invalid X if the zone density is less than this threshold +castro.abundance_failure_rho_cutoff = 1.0e0 + +############################################################################################ +# Resolution, gridding and AMR +############################################################################################ + +#if AMREX_SPACEDIM == 3 + + # Number of cells on the coarse grid + amr.n_cell = 256 256 256 + +#elif AMREX_SPACEDIM == 2 + + # Number of cells on the coarse grid + amr.n_cell = 128 256 + +#endif + +# Maximum level number allowed +amr.max_level = 1 + +# Refinement ratio +amr.ref_ratio = 4 4 4 4 4 4 4 4 4 + +# How many coarse timesteps between regridding +amr.regrid_int = 2 + +# Allow special regrids based on stability criteria +castro.use_post_step_regrid = 0 + +# Number of buffer cells in error estimation +amr.n_error_buf = 2 2 2 2 2 2 2 2 2 2 + +# Maximum grid size at each level +amr.max_grid_size = 64 64 64 64 64 64 64 64 + +# Grid sizes must be a multiple of blocking factor +amr.blocking_factor = 32 + +# What constitutes an efficient grid +amr.grid_eff = 0.9 + +# Order of reconstruction for interpolation +castro.state_interp_order = 0 + +# Limiting on state data interpolation (preserve linear combinations) +castro.lin_limit_state_interp = 1 + +# Add refinement indicators +amr.refinement_indicators = density temperature + +# Density refinement criterion +amr.refine.density.value_greater = 1.0e0 +amr.refine.density.field_name = density +amr.refine.density.max_level = 20 + +# Temperature refinement criterion +amr.refine.temperature.value_greater = 5.0e8 +amr.refine.temperature.field_name = Temp +amr.refine.temperature.max_level = 0 + +# Avoid tagging near the domain boundary +castro.max_tagging_radius = 0.75e0 + +############################################################################################ +# Physics to include +############################################################################################ + +# Whether or not to do hydrodynamics +castro.do_hydro = 1 + +# Whether or not to do gravity +castro.do_grav = 1 + +# Whether or not to do reactions +castro.do_react = 1 + +# Whether or not to apply the sponge +castro.do_sponge = 1 + +# Whether or not to apply external source terms +castro.add_ext_src = 1 +castro.ext_src_implicit = 1 + +# Whether or not to include the rotation source term +castro.do_rotation = 1 + +############################################################################################ +# PPM/Hydro options +############################################################################################ + +# Piecewise parabolic with the original limiters (0 is piecewise linear; 2 is new limiters) +castro.ppm_type = 1 + +# Use the EOS in calculation of the edge states going into the Riemann solver +castro.ppm_temp_fix = 0 + +# Which Riemann solver to use. +# 0 = Colella, Glaz, and Ferguson (cheaper, less accurate) +# 1 = Colella and Glaz 1985 (more expensive, more accurate) +# 2 = HLL +castro.riemann_solver = 0 + +# For the CG Riemann solver, we need to tell the solver not to quit when +# the iterations don't converge, but instead to do additional bisection iteration. +castro.cg_blend = 2 + +# Use a lagged predictor estimate of the source terms in the hydro +castro.source_term_predictor = 1 + +# Whether to use the hybrid advection technique that conserves angular momentum +castro.hybrid_hydro = 0 + +# Reset (rho*e) if it goes negative in the transverse terms +castro.transverse_reset_rhoe = 1 + +# Reset rho if it goes negative in the transverse terms +castro.transverse_reset_density = 1 + +# Explicitly limit fluxes to avoid hitting a negative density +castro.limit_fluxes_on_small_dens = 1 + +# Set global simulation speed limit +castro.speed_limit = 1.498962290e9 # 0.05c + +############################################################################################ +# Thermodynamics +############################################################################################ + +# Minimum allowable temperature (K) +castro.small_temp = 1.e5 + +# Minimum allowable density (g / cm**3) +castro.small_dens = 1.e-5 + +# Threshold for when to use the internal energy in calculating pressure +castro.dual_energy_eta1 = 1.0e-3 + +# Threshold for when to use (E - K) in updating internal energy +castro.dual_energy_eta2 = 1.0e-4 + +# Use Coulomb corrections in Helmholtz EOS +eos.use_eos_coulomb = 1 + +# Keep EOS inputs constant after EOS evaluation +eos.eos_input_is_constant = 1 + +# Ambient temperature (K) +castro.ambient_temp = 1.0e7 + +# Ambient density (g / cm**3) +castro.ambient_density = 1.0e-4 + +# Clamp temperature in ambient zones to its initial value +castro.clamp_ambient_temp = 1 + +############################################################################################ +# Reactions/Network +############################################################################################ + +# Limit timestep based on nuclear burning considerations (changes in internal energy) +castro.dtnuc_e = 0.1 + +# Limit timestep based on nuclear burning considerations (changes in species) +castro.dtnuc_X = 0.1 + +# Minimum temperature for allowing nuclear burning +castro.react_T_min = 1.0e8 + +# Maximum temperature for allowing nuclear burning +castro.react_T_max = 1.0e12 + +# Minimum density for allowing nuclear burning +castro.react_rho_min = 1.0e6 + +# Maximum density for allowing nuclear burning +castro.react_rho_max = 1.0e12 + +# Smallest allowable mass fraction +network.small_x = 1.0e-12 + +# Evaluate the RHS during the burn +integrator.call_eos_in_rhs = 1 + +# Integration tolerances +integrator.rtol_spec = 1.0e-6 +integrator.atol_spec = 1.0e-6 + +integrator.rtol_enuc = 1.0e-6 +integrator.atol_enuc = 1.0e-6 + +# Do not abort or retry on a failed burn (Castro will handle this) +integrator.abort_on_failure = 0 + +# Renormalize abundances during the burn +integrator.renormalize_abundances = 1 + +# Maximum temperature allowed in the burn +integrator.MAX_TEMP = 1.0e10 + +# Use tabular rate evaluation when availble +network.use_tables = 1 + +############################################################################################ +# Gravity +############################################################################################ + +# Full self-gravity with the Poisson equation +gravity.gravity_type = PoissonGrav + +# Multipole expansion includes terms up to r**(-max_multipole_order) +gravity.max_multipole_order = 6 + +# Tolerance for multigrid solver for phi solves +gravity.abs_tol = 1.e-10 + +# Use sync solve for gravity after refluxing +gravity.no_sync = 0 + +# Disable the use of the lagged composite correction for the potential +gravity.do_composite_phi_correction = 0 + +############################################################################################ +# Rotation +############################################################################################ + +# Rotational period of the rotating reference frame +castro.rotational_period = 100.0 + +############################################################################################ +# Sponge +############################################################################################ + +castro.sponge_lower_density = 1.0e0 +castro.sponge_upper_density = 1.0e0 +castro.sponge_timescale = 0.01e0 + +############################################################################################ +# Load balancing +############################################################################################ + +# Choice of load balancing strategy to use +DistributionMapping.strategy = KNAPSACK + +# Efficiency demanded from the knapsack algorithm +DistributionMapping.efficiency = 0.9 + +############################################################################################ +# Diagnostics and I/O +############################################################################################ + +# Timesteps between computing and printing volume averaged diagnostic quantities +castro.sum_interval = 1 + +# Simulation time between computing and printing volume averaged diagnostic quantities +castro.sum_per = -1.0 + +# Gravitational wave strain observation distance +castro.gw_dist = 10.0 + +# Name the job +castro.job_name = wdmerger + +# Whether or not to output plotfiles +amr.plot_files_output = 1 + +# Whether or not to output checkpoints +amr.checkpoint_files_output = 1 + +# Root name of checkpoint files +amr.check_file = chk + +# We want to store the 'old' state data in checkpoints +castro.dump_old = 1 + +# Simulation time between checkpoints +amr.check_per = 1.0 + +# Number of timesteps between checkpoints +amr.check_int = -1 + +# Root name of plot files +amr.plot_file = plt + +# Simulation time between plotfiles +amr.plot_per = 1.0 + +# Number of timesteps between plotfiles +amr.plot_int = -1 + +# Root name of small plot files +amr.small_plot_file = smallplt + +# Simulation time between small plotfiles +amr.small_plot_per = 0.1 + +# Number of timesteps between small plotfiles +amr.small_plot_int = -1 + +# Do not write plotfiles when we dump checkpoints +amr.write_plotfile_with_checkpoint = 0 + +# Do not write final checkpoint/plotfile +castro.output_at_completion = 1 + +# Do not write a plotfile or checkpoint on restart +amr.plotfile_on_restart = 1 +amr.checkpoint_on_restart = 1 + +# Restart from last run +amr.restart = chk00528 + +# Control verbosity in Amr.cpp +amr.v = 1 + +# Control verbosity in Castro.cpp +castro.v = 1 + +# Control verbosity in Gravity.cpp +gravity.v = 1 + +# State variables to add to plot files +amr.plot_vars = ALL + +# Derived variables to add to plot files +amr.derive_plot_vars = pressure X(q) + +# State variables to add to small plot files +amr.small_plot_vars = density Temp + +# Name of the diagnostic sum output files +amr.data_log = star_diag.out primary_diag.out secondary_diag.out rotation_diag.out + +############################################################################################ +# Problem parameters +############################################################################################ + +problem.mass_P = 1.05 +problem.mass_S = 0.70 + +problem.co_wd_c_frac = 0.5 +problem.co_wd_o_frac = 0.5 +problem.co_wd_he_shell_mass = 0.03 + +problem.max_co_wd_mass = 1.50 + +problem.nsub = 4 + +problem.problem = 1 + +problem.roche_radius_factor = 1.0e0 + +problem.interp_temp = 1 + +problem.relaxation_damping_factor = -1.0e-1 +problem.relaxation_density_cutoff = 1.0e3 +problem.relaxation_cutoff_time = -1.0e0 + +problem.stellar_temp = 5.0e5